spm software & resources wellcome trust centre for neuroimaging university college london spm...
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SPM Software & Resources
Wellcome Trust Centre for Neuroimaging
University College London
SPM Course
London, May 2011
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NormalisationNormalisation
Statistical Parametric MapStatistical Parametric MapImage time-seriesImage time-series
Parameter estimatesParameter estimates
General Linear ModelGeneral Linear ModelRealignmentRealignment SmoothingSmoothing
Design matrix
AnatomicalAnatomicalreferencereference
Spatial filterSpatial filter
StatisticalStatisticalInferenceInference
RFTRFT
p <0.05p <0.05
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Software: SPM8
Open Source academic freeware (under GPL) Documented and informally supported Requirements:
– MATLAB: 7.1 (R14SP3) to 7.10 (R2010a)no Mathworks toolboxes required
– Supported platforms (MEX files):
– File Formats:• Images: NIfTI-1 (& Analyze, DICOM)
• Surface meshes: GIfTI• M/EEG: most manufacturers (with FieldTrip’s fileio)
Linux (32 and 64 bit) Windows (32 and 64 bit) Mac Intel (32 and 64 bit)
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SPM Interface
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SPMweb Introduction to SPM SPM distribution:
SPM2, SPM5, SPM8 Documentation &
Bibliography SPM email discussion list SPM short course Example data sets SPM extensions
http://www.fil.ion.ucl.ac.uk/spm/
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SPM Toolboxes User-contributed SPM extensions:
http://www.fil.ion.ucl.ac.uk/spm/ext/
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SPM Documentation
Peer reviewed literaturePeer reviewed literature
SPM Books:SPM Books:Human Brain Function I & IIHuman Brain Function I & IIStatistical Parametric MappingStatistical Parametric Mapping
Online help Online help & function & function descriptionsdescriptions
SPM ManualSPM Manual
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SPM Online Bibliography
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External Resources
SPM @ Wikipedia
http://en.wikipedia.org/wiki/Statistical_parametric_mapping
SPM @ Scholarpedia
http://www.scholarpedia.org/article/SPM
SPM @ WikiBooks
http://en.wikibooks.org/wiki/SPM
MRC-CBU Imaging/MEG wiki
http://imaging.mrc-cbu.cam.ac.uk/imaging/CbuImaging
http://imaging.mrc-cbu.cam.ac.uk/meg
SPM @ NITRC
http://www.nitrc.org/projects/spm/
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SPM Mailing List
[email protected] Web home page
– http://www.fil.ion.ucl.ac.uk/spm/support/
– Archives, archive searches, instructions
Subscribe– http://www.jiscmail.ac.uk/
– email [email protected]
– join spm Firstname Lastname
Participate & learn– email [email protected]
– Monitored by SPMauthors
– Usage queries, theoretical discussions, bug reports, patches, techniques, &c…
[email protected]://www.fil.ion.ucl.ac.uk/spm/support/