some cases of common variable immunodeficiency may be due to a mutation in the sbds gene of...
TRANSCRIPT
Some cases of common variable immunodeficiency may be due to amutation in the SBDS gene of Shwachman–Diamond syndrome
S. Khan,* J. Hinks,† J. Shorto,†
M. J. Schwarz† and W. A. C. Sewell*‡
*Path Links Immunology, Scunthorpe General
Hospital, Scunthorpe, N. Lincs, †National
Genetics Reference Laboratory, St Mary’s
Hospital, Manchester, and ‡Department of
Biomedical Sciences, University of Lincoln,
Lincoln, UK
Summary
Known genetic defects currently account for only a small proportion ofpatients meeting criteria for ‘probable’ or ‘possible’ common variable immu-nodeficiency (CVID). A 59-year-old male with a 12-year history of CVIDon intravenous immunoglobulin (IVIG) is presented who developed bron-chiectasis, cytopenias and malabsorption that are recognized complicationsof CVID. Work-up for his malabsorption suggested the possibility ofShwachman–Diamond syndrome, confirmed by mutation testing. With theidentification of the molecular defect in Shwachman–Diamond syndrome(SDS), it is becoming clear that not all SDS patients have the prominentfeatures of neutropenia or pancreatic malabsorption. A meta-analysis of pub-lished immunological defects in SDS suggests that four of 14 hypogamma-globulinaemic SDS patients meet criteria for ‘possible’ CVID. Mutations in theSBDS gene may therefore be the fifth identified molecular defect in CVID.
Keywords: common variable immunodeficiency, immunodeficiency,
Shwachman–Bodian–Diamond syndrome gene, Shwachman–Diamondsyndrome
Accepted for publication 16 October 2007
Correspondence: W. A. C. Sewell, Path Links
Immunology, Scunthorpe General Hospital,
Cliff Gardens, Scunthorpe, North Lincolnshire
DN15 7BH, UK.
E-mail: [email protected]
Introduction
Common variable immunodeficiency (CVID) is a primaryimmunodeficiency disorder of unknown cause, and cur-rently identified genetic mutations (ICOS, CD19, TACI,BAFFR) account for less than a fifth of cases [1]. The fact thatsome CVID patients have variable degrees of cytopenia,develop lymphoid nodular hyperplasia and subsequentlymphoma points to a failure of bone marrow B celldifferentiation. Various immunological abnormalities,including low immunoglobulins and absent vaccineresponses that would fit criteria for ‘probable’ or ‘possible’CVID, have been recognized in some patients suffering fromShwachman–Diamond syndrome (SDS). This syndrome canpresent with a very broad array of signs, and recent advancesin the genetics of SDS have demonstrated that many patientswith SDS do not necessarily display the ‘classical’ features.Characteristic features include cytopenias (usually but notinvariably neutropenia), skeletal defects and pancreaticinsufficiency. Recent identification of the Shwachman–Bodian–Diamond syndrome (SBDS) gene at Chr7q11 hasled to identification of cases without neutropenia or tran-sient pancreatic insufficiency [2].
We report a case of CVID on intravenous immunoglo-bulin for 12 years with complications of lymphopenia,
lymphoid nodular hyperplasia and transient pancreaticinsufficiency and found to be heterozygous for a mutation inSBDS gene.
Case presentation
A 49-year-old man with no children presented initially in1995 to the haematology department with repeated earinfections over 6 years, requiring myringotomy andgrommet insertion. Over the next 3 years, he had recurrentHaemophilus influenzae pneumonia and was then found tohave panhypogammaglobulinaemia (IgG 3·7 g/l which fell to1·3 g/l, IgM < 0·2 g/l, IgA < 0·2 g/l) and lymphopenia [totallymphocyte count 0·8 ¥ 109/l; total T cells 0·622 ¥ 109/l(normal 0·7–2·1), CD4 T cells 0·337 ¥ 109/l (0·3–1·4), CD8 Tcells 0·233 ¥ 109/l (0·2–0·9), CD19 B cells 0·110 ¥ 109/l(0·1–0·5), natural killer cells 0·143 ¥ 106/l (0·09–0·6), a/b Tcell receptor (TCR) 82% and g/d TCR 4% of T cells]. Assess-ment of vaccine responses was not undertaken given thedegree of his hypogammaglobulinaemia; a diagnosis ofCVID was made and treatment with intravenous immuno-globulin (IVIG) was commenced. At the time of diagnosishe was noted to have short stature (150 cm), but did nothave neutropenia or steatorrhoea or other features ofmalabsorption. Over the next 12 years, the following
Clinical and Experimental Immunology ORIGINAL ARTICLE doi:10.1111/j.1365-2249.2007.03556.x
448 © 2008 British Society for Immunology, Clinical and Experimental Immunology, 151: 448–454
abnormalities developed: inflammatory nasal polyps, arthri-tis (knee, wrist), anaemia (haemoglobin 8·9 g/dl), eosino-philia (1·6 ¥ 109/l) and abnormal liver function tests (alanineaminotransferase 233 m/l and alkaline phosphatase 490 m/l)and was shown to have bronchiectasis and fused ectopickidneys in his right iliac fossa (Fig. 1a–d).
Severe malabsorption developed resulting in hypocalcae-mic tetany, hypoalbuminaemia and difficulty maintainingtrough IgG levels. A duodenal biopsy revealed lymphoidnodular hyperplasia (Fig. 1d) that responded poorly tosteroid therapy. Faecal immunoelastase levels were abnormal(108 mg/g; normal > 200 mg/g), suggesting exocrine pancre-atic insufficiency. Hydrogen breath test, sweat chloride andshort synacthen tests were normal. Genetic testing for SDSwere undertaken.
Materials and methods
DNA was extracted from peripheral blood [5 ml in ethylene-diamine tatraacetic acid (EDTA)] using the Autopure LSTM
system (Qiagen, Crawley, UK) according to the manufactur-er’s instructions. Analysis of the SBDS gene was then per-formed in two stages. The first stage of analysis involvedamplification of exon 2 of the SBDS gene by polymerasechain reaction (PCR), according to the method of Boococket al. [3]. In brief, two separate PCR reactions were set up:one using primers specific for the SBDS gene and one using‘dual-specific’ primers that amplified exon 2 of both theSBDS gene and its pseudogene. The oligonucleotidesequences 5′-3′ of the primers for analysis of exon 2 usedwere as follows: forward specific, AAATGGTAAGGCAAATACGG; reverse specific, ACCAAGTTCTTTATTATTAGAAG; forward dual specificity, GGGATTTGTTGTGTCTTG;and reverse dual specificity, CTTTCCTCCAGAAAAACAGC.
Each reaction contained CM129 buffer (ABgene, Epsom,UK), primers (each 10 mM) and 50–100 ng DNA. Cyclingconditions were: 95°C for 15 min, followed by 30 cycles of(95°C 1 min, 55°C 1 min, 72°C 1 min), a final extension stepat 72°C for 10 min, and cooled to 4°C indefinitely. Both PCRproducts were subjected to separate restriction endonucleasedigestions with Bsu36I and Cac8I, the former detecting themutation ca. 183_184TA > CT and the latter detecting ca.258 + 2T > C. PCR products were subjected to electrophore-sis in an agarose gel stained with ethidium bromide. Theresulting products were photographed under ultravioletlight (Fig. 2).
The second stage of analysis was to sequence the entirecoding region of the gene. Exons 1–5 were amplified in 20 mlreactions using the primers outlined in Table 1. Each reac-tion contained CM102 buffer (ABgene), primers (10 mM)and 50 ng DNA. Cycling conditions were: 95°C for 3 min,followed by 30 cycles of (95°C for 1 min, 55°C for 1 min,72°C for 1 min), a final extension step at 72°C for 5 min, andcooled to 4°C indefinitely. The resulting PCR product wascleaned up using AMPureTM (Agencourt, Beckman CoulterUK, High Wycombe, UK) magnetic bead technology on aBeckman NX liquid handling robot. These products werethen sequenced using the Big DyeTM (Applied Biosystems,Warrington, UK) Terminator version 1·1 and N13 primers.The sequencing products were cleaned up using CleanSEQTM
magnetic bead technology (Beckman Coulter UK) on aBeckman NX liquid handling robot. All the samples were runon the ABI PrismTM 3730 capillary electrophoresis sequencer(Applied Biosystems).
Sequence traces were analysed with Staden sequenceanalysis software (http://staden.sourceforge.net).
A meta-analysis of immunological abnormalities inSDS was performed. Case series and reports of SDS were
(a) Left lower lobe bronchiectatic
changes
(b) Fused right iliac fossa ectopic
kidneys and mild hydronephrosis
(not reported in either of the
syndromes)
(c) Marked OA changes
medial aspect knee joint
(d) Duodenal biopsy showing
nodular lymphoid hyperplasia
with prominent germinal centre:
feature of CVID rather than SDS
Fig. 1. X-rays and computerized tomography/magnetic resonance imaging abnormalities and duodenal biopsy (histology) in our patient. (a) Left
lower lobe bronchiectatic changes. (b) Fused right iliac fossa ectopic kidneys and mild hydronephrosis (not reported in either of the syndromes).
(c) Marked osteoarthritis changes medial aspect knee joint. (d) Duodenal biopsy showing nodular lymphoid hyperplasia with prominent germinal
centre - feature of common variable immunodeficiency rather than Shwachman–Diamond syndrome.
SBDS mutation in CVID
449© 2008 British Society for Immunology, Clinical and Experimental Immunology, 151: 448–454
identified from medline, embase and Dialog DataStar usingthe following search terms: immunoglobulin, Shwachman–Diamond syndrome, Shwachman–Bodian syndrome, con-genital lipomatosis of pancreas, hypogammaglobulinaemia,immunodeficiency or pancreatic insufficiency.
Results
SBDS genetic analysis
PCR products generated by SBDS-specific primers digestedwith Cac8I revealed the presence of ca. 258 + 2T > C muta-tion, while digestion of PCR products with Bsu36I did notreveal the second common ca. 183–184TA > CT mutation(Fig. 2). These gene conversion mutations on exon 2 derivedfrom the pseudogene sequence account for 74% of SDSmutations. Owing to the autosomal recessive nature of the
syndrome, entire gene sequencing of the coding region(exons 1–5) was carried out, which failed to reveal anyfurther mutations. Our patient is thus heterozygous for theca. 258 + 2T > C mutation of SDS.
Meta-analysis of hypogammaglobulinaemia in SDS
The results of the meta-analysis of published immunologicalabnormalities are tabulated on a case-by-case basis, and theresulting cohort subdivided into those meeting currentEuropean Society of Immunodeficiency (ESID) criteria forCVID, hypogammaglobulinaemia and other immunologicalabnormalities (Table 2). Of seven published cases and seriesof SDS, three patients met criteria for ‘possible’ CVID, 10 forhypogammaglobulinaemia and three had other immuno-logical abnormalities.
1 2 3 4 5 6 7 8
(a)
(b)
Fig. 2. (a) Polymerase chain reaction (PCR) products generated by Shwachman–Bodian–Diamond syndrome (SBDS)-specific primers, digested
with Bsu36I. The upper band represents the undigested amplimer; the lower bands are the digested products created by the presence of a Bsu36I
site, arising from the ca. 183_184TA > CT mutation. Lane 1 is a 100 base pairs (bp) ladder. Lanes 2, 3, 4, 5 and 8 are negative. Lanes 6 and 7 are
heterozygous for ca. 183_184TA > CT. (b) PCR products generated by SBDS-specific primers, digested with Cac8I. The upper band represents the
undigested amplimer; the lower bands are the digested products created by the presence of a Cac8I site, arising from the ca. 258 + 2T > C mutation.
Lane 1 is a 100 bp ladder. Lanes 2, 3, 4, 6 and 7 are heterozygous for ca. 258 + 2T > C. Lane 5 is homozygous for ca. 258 + 2T > C. Lane 8 is negative.
Table 1. Primers used in sequence analysis of exons 1–5 of the Shwachman–Bodian–Diamond syndrome (SBDS) gene. Primers are all 5′-tagged with
N13 tails (small capitals).
Primer Oligonucleotide sequence 5′-3′ Amplicon size
Exon 1 forward GTAGCGCGACGGCCAGTTAAGCCTGCCAGACACAC 543
Exon 1 reverse CAGGGCGCAGCGATGACCCGAACCAACCAAATAAAGA
Exon 2 forward GTAGCGCGACGGCCAGTGGGATTTGTTGTGTCTTG 369
Exon 2 reverse CAGGGCGCAGCGATGACCTTTCCTCCAGAAAAACAGC
Exon 3 forward GTAGCGCGACGGCCAGTGCTCAAACCATTACTTACATATTGA 462
Exon 3 reverse CAGGGCGCAGCGATGACCCAGACCCATTATTTTAATG
Exon 4 forward GTAGCGCGACGGCCAGTGCCTTCACTTTCTTCATAGT 514
Exon 4 reverse CAGGGCGCAGCGATGACGAAAATATCTGACGTTTACAACA
Exon 5 forward GTAGCGCGACGGCCAGTGCTTGCCTCAAAGGAAGTT 492
Exon 5 reverse CAGGGCGCAGCGATGACCACTCTGGACTTTGCATCTT
S. Khan et al.
450 © 2008 British Society for Immunology, Clinical and Experimental Immunology, 151: 448–454
Tabl
e2.
Met
a-an
alys
isof
stu
dies
inSh
wac
hm
an–D
iam
ond
syn
drom
e(S
DS)
pati
ents
wh
ofu
lfilc
rite
ria
for
com
mon
vari
able
imm
un
odefi
cien
cy(C
VID
)an
dot
her
imm
un
olog
ical
abn
orm
alit
ies.
Dis
ease
cate
gory
Age
/sex
Rec
urr
ent
infe
ctio
ns
IgG
leve
ls(g
/l)
IgM
leve
ls
(g/l
)
IgA
leve
ls
(g/l
)
Vac
cin
e
resp
onse
s
CD
19
cells
(%)
CD
4/
CD
8
rati
o
CD
16/
CD
56
cells
(%)
Neu
trop
hil
chem
otax
isR
efer
ence
‘Pos
sibl
e’C
VID
7/M
Bac
teri
al+
vira
l7·
0*0·
30·
8A
bsen
t/††
242·
2‡1·
0§A
bnor
mal
[4]
18/M
Bac
teri
al+
vira
l4·
8§0·
30·
7N
orm
al/††
1·2§
0·5§
1·8§
–[4
]
41/F
Bac
teri
al5·
8§ (6·3
–12·
9g/
l)–
–A
bsen
t
(pn
eum
ococ
cal)
–N
orm
al–
–[5
]
59/M
Bac
teri
al1·
3§<
0·2§
<0·
2§–
1·10
§1·
4§1·
43§
–In
dex
case
Hyp
ogam
ma-
glob
ulin
aem
ia
ofot
her
typ
es
4m
onth
/F
1·5/
M
Bac
teri
al
Bac
teri
al
3·8§
(6·0
–15·
75g/
l)
6·8
0·40
§(0
·7–2
·3g/
l)
<0·1
§
0·07
§(0
·2–1
·4g/
l)
0·3
Abs
ent
–
CD
20–6
(10–
30%
)
–
2·0
–
3 –
Abn
orm
al
–
[6]
[7]
2/M
Bac
teri
al+
vira
l6·
1§,¶
0·3
0·2§
––
––
–[4
]
–B
acte
rial
–Lo
w–
–N
orm
alN
orm
al–
Abn
orm
al[8
]
–B
acte
rial
––
Low
–N
orm
alLo
w–
Abn
orm
al[8
]
–B
acte
rial
––
Low
–N
orm
alN
orm
al–
Abn
orm
al[8
]
–B
acte
rial
–Lo
w–
–N
orm
alN
orm
al–
Abn
orm
al[8
]
16/M
Bac
teri
al0·
36§
0·03
§0·
12§
––
––
–[9
]
3/M
Nil
4·8§
0·07
§A
bsen
t§–
––
––
[10]
6·5/
FN
il3·
8§0·
780·
18§
––
––
–[1
0]
Oth
er
imm
un
olog
ical
abn
orm
alit
ies
8/M
Bac
teri
al+
vira
l9·
80·
30·
7–/
††9·
32·
31·
5§A
bnor
mal
[4]
17/M
Bac
teri
al8·
20·
411
·1–
––‡
–A
bnor
mal
[4]
14/F
Bac
teri
al16
·51·
32·
7N
orm
al/††
151·
0§3·
5§–
[4]
*Low
IgG
1le
vels
;† Low
anti
-Bis
ohae
mag
glu
tin
inle
vels
;‡ low
lym
phoc
yte
prol
ifer
atio
nto
con
can
aval
inA
/pok
ewee
dm
itog
en;§ lo
wfo
rag
e;¶ lo
wIg
G1
and
IgG
3le
vels
;–,n
otst
udi
ed/a
vaila
ble.
SBDS mutation in CVID
451© 2008 British Society for Immunology, Clinical and Experimental Immunology, 151: 448–454
Discussion
This case describes a man with CVID on IVIG for 12 yearswho was found to have a heterozygous mutation in the SBDSgene of SDS (OMIM no. 260400). Current ESID criteria forCVID include ‘probable’ CVID in those aged > 2 years withlow IgG and another low isotype level (IgA or IgM) withabsent vaccine responses, and ‘possible’ CVID in thosewith low immunoglobulin of any isotype with absentvaccine responses [11]. The cytopenias seen in CVIDpatients are considered to be ‘autoimmune’, although anti-bodies against cellular components are not usually identi-fied, suggesting a degree of bone-marrow suppression. SDSis a bone marrow failure disorder, and while neutropenia isthe most consistent feature, additional cytopenias includingaplastic anaemia can develop [12]. Bone marrow CD34+ cellsin SDS are unable to form haemopoietic colonies and havehigh rates of apoptosis via the Fas signalling pathway [13].Various other immunological abnormalities, such as lowimmunoglobulins, low T cells and natural killer (NK)cells, have been described. Features common to both CVID
and SDS include the predominance of bacterial infections(Staphylococcus aureus, H. influenzae and Pseudomonasspecies) over fungal infections [14] and chronic diarrhoea/malabsorption, but pancreatic investigations are usually notundertaken in patients with CVID. The features of CVIDand SDS are compared and contrasted in Table 3.
SDS is an autosomal recessive disorder which usually pre-sents early in life with recurrent infections, neutropenia andpancreatic insufficiency. Complications of aplastic anaemia,myelodysplastic syndromes or leukaemia occur in those whoreach adult age [12]. It has an extremely heterogeneous clini-cal presentation, as does CVID, but 90% of patients meetingclinical criteria have mutations in the Shwachman–Bodian–Diamond syndrome gene (SBDS) (see Table 4 for summaryof genetic mutations identified in CVID and SDS). TheSBDS gene located on chromosome 7q11 is highly conservedin archaea, plants and eukaryotes [3,16]. The protein is pre-dicted to have 250 amino acids and gene conversion duringmeiosis with its neighbouring pseudogene, SBDSP (theduplicon of SBDS gene located 5·8Mb distally with nucle-otide sequence homology of 97%), which results in the
Table 3. Clinical features of Shwachman–Diamond syndrome (SDS) and common variable immunodeficiency (CVID).
SDS CVID
Common features to both diseases
Recurrent infections Recurrent infections
Malabsorption due to exocrine pancreatic dysfunction (may be transient)
hyperplasia, coeliac-like disease, chronic Giardia lamblia infection)
Malabsorption (inflammatory bowel disease, lymphoid nodular
Haematological abnormalities Haematological abnormalities (?autoimmune)
• Neutropenia (intermittent/persistent) • Cytopenias (neutropenia, lymphopenia, thrombocytopenia)
• Thrombocytopenia • Anaemia (red cell aplasia)
• Anaemia
Low immunoglobulins � absent vaccine responses in some cases
(Table 2)
Low immunoglobulins and absent vaccine responses (ESID
diagnostic criteria)
Abnormal liver function tests (fatty liver) Abnormal liver function tests (granulomatous CVID, rest unknown)
Autoimmunity (hypothyroidism) Autoimmunity (haematological abnormalities, thyroid disease,
neuropathy)
Malignancy Malignancy
• MDS (10–44%) • Gastric carcinoma
• Leukaemia (5–24%) • Lymphoma
Other features
Growth and skeletal abnormalities
• Metaphyseal chondrodysplasia
Multi-systemic granulomatous disease (eye, lymph nodes, skin, liver,
spleen, GI tract)
• Osteoporosis/osteomalacia Large granular lymphocytosis
• Short stature
• Thoracic cage defects
Neurological problems
• Global apraxia
• Generalized weakness/hypotonia
Cardiovascular problems
• Myocardial fibrosis
Oral/dental
• Mucositis/periodontal infections
• Dental dysplasia
Psychological problems
• Cognitive and attention deficits
S. Khan et al.
452 © 2008 British Society for Immunology, Clinical and Experimental Immunology, 151: 448–454
majority of mutations seen in SDS patients. Although thefunction of the protein remains unknown, SBDS proteinshuttles in and out of the nucleolus [17] and studies in yeasthomologues suggest a role in ribosomal RNA processing[18,19]. Homozygous early truncating mutations result incomplete loss in SDS function and are lethal at the embryostage [18,20], explaining the absence of patients with suchmutations. Among the various mutations described, muta-tions ca. 258 + 2T > C and ca. 183_184TA > CT account for74% of SDS mutations but the ca. 258 + 2T > C mutationalone may also result in the clinical phenotype [21]. It hasbeen suggested that the absence of mutations in currentlyknown genes does not necessarily preclude diagnosis if thepatient fits clinical criteria [22] and equally neutropenia orpancreatic insufficiency may not be present in some patients.Phenotypic–genotypic correlations have not been found
[23], and it is possible that other genes controlling RNAmetabolism affect SDS function [24]. SDS shares its nucle-olar and RNA involvement with other syndromes such ascartilage–hair hypoplasia (short stature and skeletal abnor-malities), dyskeratosis congenita (mutations in small nucle-olar and telomerase RNA) and Diamond–Blackfan anaemia(mutations in the RPS19 gene encoding ribosomal proteinS19) [25].
Our patient now has normal pancreatic function, hasnever had neutropenia and has only the ca. 258 + 2T > Cmutation. Hepatomegaly, elevated liver enzymes and malab-sorption due to pancreatic insufficiency seen in SDS mayimprove over time in about half the patients [2,26]. Randomfaecal elastase determination can provide sufficient informa-tion of pancreatic exocrine function [27] but, as adultpatients with SDS may be pancreatic sufficient, the clinical
Table 4. Prevalence of identified genetic mutations in common variable immunodeficiency (CVID) and Shwachman–Diamond syndrome (SDS).
Disease Gene
Location on
chromosome Protein function Mutations identified Prevalence (%) References
CVID ICOS 2q33 T cell stimulation, isotype
switching, germinal
centre formation
Complete deletion of
exon 2 and intron 2,
or partial deletion
of intron 1 and intron
3 result in partial
deletion of ICOS mRNA
and absent protein
2
Deletional event
during meiotic
recombination
[1]
CVID CD19 16p11.2 Crucial role in signalling
on antigen stimulation
as part of B cell
receptor complex
Two families with
homozygous null
mutations (insertion
of adenine in exon 6 and
deletion of guanine and
adenine in exon 11) in the
CD19 gene
< 1 [1]
CVID TNFRSF13C
(BAFFR)
22q13.1–31 BAFF/BAFFR interaction:
B cell survival factor,
marginal zone
differentiation, T cell
co-stimulation
Homozygous deletion
in the transmembrane
region of BAFFR in one
autosomal recessive
CVID family
< 1 [1]
CVID &
IGAD
TNFRSF13B
(TACI)
17p11.2 TACI mediates isotype
switching in B cells
Missense mutation and single
nucleotide insertion in one
allele of TNFRSF13B
5–10 [1,15]
SDS SBDS 7q11 SBDS protein:
exact function
unknown; has a role in
ribosome biogenesis
with nucleolar and
non-nucleolar functions
Two common heterozygous
loss-of-function mutations
apart from others [12]:
ca. 258 + 2T > C: Disrupts
donor splicing site and use of
upstream donor site leads to
frameshift mutation and
premature truncation at 84th
AA (84CfsX3) ca. 183_184
TA > CT: Introduction
of in-frame stop codon at
62nd AA lysine (K62X);
homozygous K62X null
mutation is embryonically
lethal
SDS: 90%
CVID: unknown
Recurring mutations
arise from gene
conversion
between SBDS and
SBDSP during
meiotic
recombination
[3,16]
SBDS mutation in CVID
453© 2008 British Society for Immunology, Clinical and Experimental Immunology, 151: 448–454
criterion of exocrine pancreatic insufficiency does notappear to be essential for the diagnosis of SDS. Pancreaticinsufficiency may be ameliorated by enzyme supple-mentation. Accordingly, genetic testing to screen for SBDSmutations could be considered in selected CVID patientswith unexplained weight loss, chronic severe diarrhoea andrecurrent anaemia. Abnormal neutrophil chemotaxis couldalso be used to support the diagnosis of SDS, as it should benormal in CVID, but this assay is not readily available inmost centres and there are no external quality assuranceschemes for this test. Our patient appeared to be a typicalCVID patient - suggesting that other patients with thesecommon features of CVID could also have SBDS mutations.Defects in ribosomal processing can affect cell function atvarious stages that explain the heterogeneity of other dis-eases with ribosomal defects. Given that the four establishedgenetic defects (ICOS, CD19, TACI, BAFFR) account for< 20% of cases of CVID, screening studies of CVID patientswith suggestive clinical and laboratory features for SBDSmutations may be useful in establishing whether or notSBDS is the ‘fifth’ CVID gene.
Acknowledgements
We are grateful to Dr Carol Hunt and Dr Loraine Sheehanfor providing the histopathology pictures, Dr Simon Maslinfor comments on the radiographic images and to DrGeorgina Hall for useful communications regarding genesequencing in SDS.
References
1 Salzer U, Grimbacher B. TACItly changing tunes: farewell to a yin
and yang of BAFF receptor and TACI in humoral immunity? New
genetic defects in common variable immunodeficiency. Curr Opin
Allergy Clin Immunol 2005; 5:496–503.
2 Nicolis E, Bonizzato A, Assael BM, Cipolli M. Identification
of novel mutations in patients with Shwachman–Diamond
syndrome. Hum Mutat 2005; 25:410–18.
3 Boocock GR, Morrison JA, Popovic M et al. Mutations in SBDS are
associated with Shwachman–Diamond syndrome. Nat Genet 2003;
33:97–101.
4 Dror Y, Ginzberg H, Dalal I et al. Immune function in patients with
Shwachman–Diamond syndrome. Br J Haematol 2001; 114:712–17.
5 Church JA. A pediatric genetic disorder diagnosed in adulthood.
PLoS Med 2006; 3: e15.
6 Kornfeld SJ, Kratz J, Diamond F, Day NK, Good RA. Shwachman–
Diamond syndrome associated with hypogammaglobulinemia and
growth hormone deficiency. J Allergy Clin Immunol 1995; 96:247–
50.
7 Maki M, Sorto A, Hallstrom O, Visakorpi JK. Hepatic dysfunction
and dysgammaglobulinaemia in Shwachman–Diamond syndrome.
Arch Dis Child 1978; 53:693–4.
8 Aggett PJ, Harries JT, Harvey BA, Soothill JF. An inherited defect of
neutrophil mobility in Shwachman syndrome. J Pediatr 1979;
94:391–4.
9 Hudson E, Aldor T. Pancreatic insufficiency and neutropenia with
associated immunoglobulin deficit. Arch Int Med 1970; 125:314–
16.
10 Brueton MJ, Mavromichalis J, Goodchild MC, Anderson CM.
Hepatic dysfunction in association with pancreatic insufficiency
and cyclical neutropenia. Shwachman–Diamond syndrome. Arch
Dis Child 1977; 52:76–8.
11 European Society for Immunodeficiencies (ESID). CVID diag-
nostic criteria. Available at: http://www.esid.org/workingparty.
php?party=3&sub=2&id=73#Q2 (accessed 28 March 2007).
12 Dror Y, Freedman MH. Shwachman–Diamond syndrome. Br J
Haematol 2002; 118:701–13.
13 Dror Y, Freedman MH. Shwachman–Diamond syndrome marrow
cells show abnormally increased apoptosis mediated through the
Fas pathway. Blood 2001; 97:3011–16.
14 Grinspan ZM, Pikora CA. Infections in patients with Shwachman–
Diamond syndrome. Pediatr Infect Dis J 2005; 24:179–81.
15 Castigli E, Wilson SA, Garibyan L et al. TACI is mutant in common
variable immunodeficiency and IgA deficiency. Nat Genet 2005;
37:829–34.
16 Woloszynek JR, Rothbaum RJ, Rawls AS et al. Mutations of the
SBDS gene are present in most patients with Shwachman–
Diamond syndrome. Blood 2004; 104:3588–90.
17 Austin KM, Leary RJ, Shimamura A. The Shwachman–Diamond
SBDS protein localizes to the nucleolus. Blood 2005; 106:1253–8.
18 Shammas C, Menne TF, Hilcenko C et al. Structural and muta-
tional analysis of the SBDS protein family. Insight into the
leukemia-associated Shwachman–Diamond syndrome. J Biol
Chem 2005; 280:19221–9.
19 Savchenko A, Krogan N, Cort JR et al. The Shwachman–Bodian–
Diamond syndrome protein family is involved in RNA metabolism.
J Biol Chem 2005; 280:19213–20.
20 Zhang S, Shi M, Hui CC, Rommens JM. Loss of the mouse ortholog
of the Shwachman–Diamond syndrome gene (SBDS) results in
early embryonic lethality. Mol Cell Biol 2006; 26:6656–63.
21 Kawakami T, Mitsui T, Kanai M et al. Genetic analysis of
Shwachman–Diamond syndrome: phenotypic heterogeneity in
patients carrying identical SBDS mutations. Tohoku J Exp Med
2005; 206:253–9.
22 Hall GW, Dale P, Dodge JA. Shwachman–Diamond syndrome: UK
perspective. Arch Dis Child 2006; 91:521–4.
23 Kuijpers TW, Alders M, Tool AT, Mellink C, Roos D, Hennekam
RC. Hematologic abnormalities in Shwachman Diamond syn-
drome: lack of genotype–phenotype relationship. Blood 2005;
106:356–61.
24 Menne TF, Goyenechea B, Sánchez-Puig N et al. The Shwachman–
Bodian–Diamond syndrome protein mediates translational activa-
tion of ribosomes in yeast. Nat Genet 2007; 39:486–95.
25 Liu JM, Ellis SR. Ribosomes and marrow failure: coincidental asso-
ciation or molecular paradigm? Blood 2006; 107:4583–8.
26 Cipolli M. Shwachman–Diamond syndrome: clinical phenotypes.
Pancreatology 2001; 1:543–8.
27 Molinari I, Souare K, Lamireau T et al. Fecal chymotrypsin and
elastase-1 determination on one single stool collected at random:
diagnostic value for exocrine pancreatic status. Clin Biochem 2004;
37:758–63.
S. Khan et al.
454 © 2008 British Society for Immunology, Clinical and Experimental Immunology, 151: 448–454