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SolCAPSolanaceae Coordinated Agricultural ProjectDedicated to the Improvement of Potato and Tomato
Executive Commitee :David Douches Walter De Jong Robin Buell David Francis
Alexandra Stone Lukas Mueller AllenVan Deynze
Supported by the National Research Initiative Plant Genome Program of USDA’s Cooperative State Research , Education and Extension Service
What is SolCAP?
The SolCAP project links together people from public institutions, private institutions and industries who are dedicated to the improvement of the Solanaceae crops: potato and tomato.
Through innovative research, education and training the SolCAP project will focus on providing significant benefits to both the consumer and the environment.
The SolCAP project is supported by the Agriculture and Food Research Initiative (AFRI) Applied Plant Genomics Program of the USDA’s Cooperative State Research, Education and Extension Service
SolCAP Management Structure
Stakeholder Advisory BoardDr. Robert Hoopes, Frito‐LayErik Legg, SyngentaDr. Thomas Osborn, SeminisChuck Rivara, CTRIDr. Caius Rommens, Simplot
Scientific Advisory BoardDr. Glenn BryanDr. James GiovannoniDr. David NealeDr. Dani Zamir
Executive CommitteeDr. Robin BuellDr. Walter De JongDr. David FrancisDr. Alexandra StoneDr. Allen Van DeynzeDr. Lukas Mueller
Project AssistantKelly Zarka
GenotypingFrancis
Van Deynze
Data ManagementBuell
Mueller
Small Grants ProgramFor Genotyping Trait Specific Populations
Executive Committee
Germplasm PanelsDouchesFrancis
EducationDe Jong
Van Deynze
ExtensionStoneLiedlFrancis
Extension Advisory BoardDr. Deana Namuth CovertDr. Deborah Lewis
Education and Extension AssessmentDr. Michael Coe
SolCAP Advisory Board
Project DirectorDr. David Douches
MinnesotaUniversity of Minnesota WisconsinUSDA/ARS University of WisconsinMichiganMichigan State UniversityOhio Ohio State University
Lead Institution: Michigan State University
OregonOregon State UniversityCedar Lake Research and ConsultingIdahoUSDA/ARS University of IdahoCaliforniaUC DavisCampbells R&D
New YorkCornell UniversityMarylandUSDA/ARS Beltsville
West VirginiaWest Virginia State UniversityNorth CarolinaNorth Carolina State UniversityFloridaUniversity of Florida
SolCAP Project Participants
SolCAP Project OverviewResearch - Education - Extension [Potato Example]
‐mRNA ‐> cDNA ‐> Transcriptome‐Snowden, Atlantic, Premier Russet
‐Solexa sequencing of new ESTs‐50 bp reads with alignment‐new eSNPs
Sequencing‐eSNPs identified from previous ESTs
(Bintje, Shepody, Kennebec )‐7700 potato
‐200 Candidate genes‐SCRI 700 validated SNPs‐Dutch 400 validated SNPs‐New eSNPs from SolCAP sequencing‐Interface with SGN
‐eSNPs‐Panel phenotypic data‐Panel genotypic data
Bioinformatics
‐Infinium platform (7600 SNPs)‐1200 genotypes per run
‐Germplasm panel (500)‐Additional mapping populations (1900)
‐Phenotyping by breeder‐Genotyping by SolCAP‐Determined through Small Grants Program
Illumina Genotyping
‐Potato elite germplasm‐300 clones & genetic lines‐200 4x mapping (QTL)‐100 2x mapping (QTL)‐14 species‐genetic stocks
‐Descriptor database (literature)‐Phenotyping, 2 yrs, 3 locs
‐NY, WI, OR (250 clones)‐NC, ID, MN 4x mapping (200 progeny)‐Key traits: CHO, starch, vitamins
Germplasm Panels‐SNP mapping (2x)‐Haplotype analysis‐Association mapping for key traits
‐CHO, starch‐Germplasm relationships‐Design further mapping populations‐QTL identification for key traits (4x)
Genotype Panels Studies
‐Plant Breeding and Genomics Community of Practice (CoP)‐Target breeding community‐Coordinated activity of ALL CAPs to create content
‐Sol (lead)‐Rice‐Barley‐Wheat‐Conifer‐Onion‐other
‐Survey‐based Assessment‐Needs‐Impact measurement
eXtension.org
‐Graduate students‐Graduate class (distance learning)‐Translational Genomics
‐Breeding community‐Workshops (1/2 day)‐PAA‐other
‐Workshops for‐Bioinformatics‐SGN‐QTL‐Markers‐Mapping‐MAS/MAB
‐Survey‐based Assessment‐Needs‐Impact measurement
Multiple Targets
‐Database for germplasm panel
‐Genotype‐Phenotype‐Descriptors
‐Database for SNPs‐Breeders Toolbox
SGN
‐QTL validation‐New mapping populations
‐10 additional (1900 genotypes)‐New traits
‐Marker conversion of SNP to agarose‐based‐MAS/MAB
Small Grants Program
‐Improved breeding‐Methods‐Efficiency
‐New varieties
Breeders Apply MAS/MAB
Visit us athttp://solcap.msu.edu