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1)Chem office / chem. Draw ultra (version no. 10)

-- used to draw the structures of drug molecules in 2D and then to convert them in 3 D , to find

the IUPAC name of the unknown ompound, to find the structure of the drug from its IUPAC

name,to give NMR spectrum (approx) of unknown drug.

2)Pymol,Rasmol.Jmol,Molmol ,VMD

---all these softwares r used to visualize the protein / peptide 3 d structure..

)2D QSAR, 3D QSAR, CoMFA,CoMSIA

---for finding the structure activity relationship

8)BLAST,FASTA,PROSPECTUS,COPIA

---for sequence alignment of proteins.. and nucleic acids..

9)Genscan, Glimmer

---gene finding and sequence analysis

10)CLUSTAL W ,CLUSTAL X

---for sequence alignment of proteins..

11)AMBER,CHARMM,chem2 pac,GROMOS,GROMACS,MOE,SCHRODINGER

---3 D structure visualization,molecular dynamics,energy minimixation..

12)MM2,MOPAC, AM1, PM

---molecular dynamics

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13)Gaussian

---for quantum chemistry calculations

14)Sigmastat

---used for statistical calculations..

19)Tripose

--mainly used for molecular design and drug design

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15)Alchemi,cache,SYBYL

---structure drawing, 3 D visualization of drugs and proteins

16)EMBOSS ,GCG

---clusture of many softwares used mainly for homology modeling

17)Autodock

---for docking studies (checking drug molecular fitting into receptor)

18)Topkat

------used for toxicity prediction

Plzzzzzz Visit these websites.. 1)www.pdb.org

http://www.pdb.org/http://www.pdb.org/http://www.pdb.org/http://www.pdb.org/