simon d. rycroft vincent s. smith & dave roberts scratchpads biodiversity online redefining...

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Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads “Biodiversity online” “Redefining publication”

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Page 1: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Simon D. RycroftVincent S. Smith & Dave Roberts

Scratchpads“Biodiversity online”“Redefining publication”

Page 2: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Your data1

Published and reviewed

on your site

3Uploaded

and tagged

2

What is a Scratchpad?

Page 3: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Your dataSpecimens

ImagesLiterature

DNA & Phylogenies Descriptions

Page 4: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Taxonomy backbone• Classification import from uBio

Classification Bank

• Import from tab delimited files in three different formats

• Makes use of a core feature of Drupal

Page 5: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Auto tagging• Quick and easy

• Data available immediately after upload

• Works with any extra data that may be added to a taxonomy (vernacular names, synonymy)

Page 6: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Sucking lice (Anoplura) have around 500 species and represent the smaller of the two traditional suborders of lice. The Anoplura are all blood-feeding ectoparasites of mammals. They can cause localised skin irritations and are vectors of several blood-borne diseases.

Children appear particularly susceptible to attracting lice, possibly due to their fine hair.

At least three species of Anoplura are parasites of humans; the human condition of being infested with sucking lice is called pediculosis. Pediculus humanus is divided into two subspecies, Pediculus humanus humanus, or the body louse, sometimes nicknamed "the seam squirrel" for its habit of laying of eggs in the seams of clothing, and Pediculus humanus capitis, or the head louse. Phthirus pubis (the pubic louse) is the cause of the condition known as crabs.

http://dev.catlife.myspecies.info/

Page 7: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

On your site

Page 8: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Taxon pages• Content is displayed in “Panels” on “taxon

pages”

• Panels is a plugin feature for Drupal provided by a third party

• Extended with “View controls”

Page 9: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Curate the web• View controls allows a user of a Scratchpad

to effectively curate content from the web.

• Currently have panels for:– Wikipedia

– Flickr

– Yahoo Images

– Biodiversity Heritage Library / Google scholar

– NCBI

– GBIF specimen location maps

Page 10: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Default Panels

Page 11: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Additional features

Page 12: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Additional features• Enterprise backup

– TSM on the Scratchpads’ server

– Intend to include an additional tape archive

Page 13: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Additional features• Enterprise backup

– TSM on the Scratchpads’ server

– Intend to include an additional tape archive

• Additional modules– Nested set query

– Tinytax taxonomy browser

– Autocomplete taxonomic name browsing

Page 14: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Scratchpad statisticsOver100,000 pages, and 650 contributors

• Contributors:– No more than 10% significantly active– Contributors in more than 30 countries

• Pages– Over 60 Sites– Largely made up of definitions and references, but also

includes images, specimens, descriptions, DNA sequences and maps.

Page 15: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Visitors

Key monthly statistics- 50,000 page views - 6,000 visitors- 8 minutes on site- 50% returning visits

Page 16: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Future developments• Help

• Improved taxonomy handling

• Export of data

Page 17: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication

Sand box & Information• http://scratchpads.eu

• http://sandbox.scratchpads.eu

Page 18: Simon D. Rycroft Vincent S. Smith & Dave Roberts Scratchpads Biodiversity online Redefining publication