signaling to program cell death (apoptosis) apoptosis is a cell mechanism used to eliminate cells...
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Signaling to PROGRAM cell death (Apoptosis)
Apoptosis is a cell mechanism used to eliminate cells that are unnecessary to or that contain mutations that are dangerous to the body . Loss of the ability to undergo apoptosis leads to cancer.
1. Phenotypes of apoptosis:
• Overall shrinkage in volume of the cell and its nucleus
• Loss of adhesion to neighboring cells
• Formation of blebs on the cell surface
• DNA fragmentation: dissection of the chromatin into small fragments
• Rapid engulfment of the dying cell by phagocytosis
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Apoptotic cells
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Apoptosis (Program cell death)
Factors that induce apoptosis:Internal stimuli: abnormalities in DNAExternal stimuli: removal of growth factors,addition of
cytokines (Tumor Necrosis Factor or TNF)
Signal transduction pathways leading to apoptosis:
There are two major pathways: intrinsic pathway(mitochondria-dependent) and extrinsic pathway(mitochondria-independent).
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Death receptor pathway
• The death receptor pathway is activated by external cytokines
and is mitochondria-independent The ligands of the death receptors are members of the
tumornecrosis factor (TNF) family of proteins, including TNF,
Fasligand (FasL), TRAIL/Apo2L, Apo3L
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TNFFasL Apo3LTRAIL
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Activation of the death receptors
Binding of ligand to the death receptors results in homotrimerization of the receptors
The death receptors contain a death domain in the cytoplasmic
region that is required for apoptosis signaling
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Activation of the death receptors
Trimerization of the receptor death domains allows binding and
activation of FADD (Fas-associated death domain protein) and
formation of death-inducing signaling complex (DISC)
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DISC recruitsand activatesProcaspase 8and 10
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Activation of procaspases
• Caspases are a family of cysteine aspartyl-specific proteases that are activated at an early stage of apoptosis and are responsible for triggering most, if not all, of the changes observed during apoptosis.
In the absence of stimulation, caspases exist in the cell as an inactive precursor. Activation of caspases by DISC results in enzymatic removal of portions of the caspase precursors and release of smaller fragments that are active.
The active caspase then diffuses into the cytoplasm and cleaves target proteins.
inactive
active
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Two major classes of caspases
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Initiator caspases: initiate the onset of apoptosis by activating the executioner caspases
Executioner caspases: destroy actual targets in the cell to execute apoptosis
Caspase 8, caspase 9, caspase 10, etc.
Caspase 3, caspase 6, caspase 7
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FAK (focal adhesion kinase): inactivation of FAK disrupt cell adhesion, leading to detachment of the apoptotic cell from its neighbors.Lamins: important component of the nuclear envelope. Cleavage of lamins leads to disassembly of the nuclear lamina.
Proteins required for cell structure: actin, intermediate filaments, etc. Cleavage of these proteins lead to changes in cell shape and the surface blebbing.
Endonuclease CAD: responsible for chromosome fragmentation. CAD cuts DNA into small fragments. CAD normally binds to an inhibitor protein. Caspases cleaves the inhibitor protein and activates CAD.
Enzymes involved in DNA repair: no need to repair DNA in cells destined to death.
Some cellular targets of caspases
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Summary of death receptor pathway
procaspase 3 caspase 3
ligands
Death receptors
FADD/DISC
Caspase 8, 10
Caspase 3, 6, 7
Lamin, CAD,actin,Adhesion molecules, etc
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Apoptosis (Program cell death)
Factors that induce apoptosis:Internal stimuli: abnormalities in DNAExternal stimuli: removal of growth factors,addition of
cytokines (Tumor Necrosis Factor or TNF)
Signal transduction pathways leading to apoptosis:
There are two major pathways: intrinsic pathway(mitochondria-dependent) and extrinsic pathway(mitochondria-independent).
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•
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Mitochondria
The outer membraneand intermembrane space are involved in apoptosis signaling
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The bcl-2 family of proteins
BH: bcl-2 homology
6 proteins
18 proteins
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The bcl-2 family proteins homo- and hetero-dimerize
The Bcl-2 family members can form homo- or hetero-dimers
through the BH3 domains.
The pro-apoptotic Bax homo-dimers promotes apoptosis.
Bcl-2 forms hetero-dimers with Bax, leading to the inhibition
of the apoptotic activity of Bax.
How do these proteins regulate apoptosis?
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Thus, the relative levels of pro-survival and pro-apoptosis
Bcl-2 family proteins determine cell survival or apoptosis.
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Bcl-2 family proteins control cytochrome c translocation
intermembrane space
cytoplasm
Bax forms homo-dimers in the presence of apoptotic signals.
This homodimer presumably promotes the opening of achannel that controls the translocation of cytochrome cfrom the intermembrane space to cytoplasm
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Bcl-2 interferes with Bax function by forming a heterodimer with Bax. This leads to the closing of the channel
andinhibition of cytochrome c translocation
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Cytochrome c translocation initiates caspase cascade
In the cytosol, cytochrome c binds toApaf-1 to form apoptosome
•Apaf-1
Apoptosome
Caspase 9Procaspase
9
Procaspase 3
Caspase 3
Cyt. c
The apoptosome recruits procaspase 9
to generate the active caspase 9
Caspase 9 then activates theexecutioner caspase 3, 6, 7
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Extrinsic and intrinsic pathways converge at executioner caspases
Caspase 9
ligands
Death receptors
FADD/DISC
Caspase 8, 10
Caspase 3, 6, 7
Lamin, CAD,actin,Adhesion molecules, etc
Pro-apoptotic Bcl-2 proteins
Cytochrome c translocation
Apoptosome (Apaf-1/cyt.c)
Intrinsic apoptosis signals
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Caspase assay--measure caspase activation
TUNEL assay--measure DNA fragmentation
Activation of caspase 3 results in the cleavage of a synthetic caspase 3 substrate called DEVD-pNA (aspartate-glutamate-valine-aspartate p-nitroanalide). Cleavage of DEVD-pNA releases pNA, which can then be detected by a change it its absorbance at 405 nm.
Apoptosis lab:
Induction of apoptosis of Jurkat human T-cells by staurosporine.
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Methods to measure apoptosis
TUNEL assay: measure DNA fragmentation
TdT (terminal deoxynucleotidyl transferase): adds dNTPs to the 3’ end of DNA molecules in the absence of a template
3’
5’
3’
5’
TdT
FITC-dUTPBright field
FITC