send: a new avenue of data standards - phuse wiki goswami.pdfarnab goswami data science, statistics...
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Copyright © 2016 QuintilesIMS. All rights reserved.
SEND: A New Avenue of Data Standards
Arnab Goswami QuintilesIMS, Bangalore
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A New Thinking…..
SEND: A New Avenue of Data Standards
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• SEND is an implementation of the Study Data Tabulation Model (SDTM) for nonclinical toxicology studies and is intended to provide a structured representation of information included in study report appendices.
• SEND terminology will predominately use INHAND (International Harmonization of Nomenclature and Diagnostic).
• SEND Implementation Guide: The implementation guide is a set of instructions and examples of how to structure data into the SEND format.
Introduction: SEND: Standard for Exchange of Non-clinical Data
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SEND is a concerted effort of teams from :
CDISC FDA Pharmaceutical companies Clinical Software Vendors CROs
Who developed SEND?
SEND: A New Avenue of Data Standards
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A Standardized format for non-clinical data reporting To set controlled terminology Facilitating Data review Enhance data warehouse Better analysis and visualization for predictability
What is the objective?
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Studies supporting NDA submissions that start (protocol signature date) after December 18, 2016, and studies supporting IND submissions that start after December 18, 2017, must be submitted with electronic data as specified in the electronic data standards catalogue.
(As per Society of Toxicologic Pathology)
The Mandate
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Timeline for SEND implementation
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Before and after SEND-ing….
SEND: A New Avenue of Data Standards
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The SEND implementation as described in the SENDIG v3.0 has many similarities to the implementation for human clinical trials described in the SDTMIG v3.1.2.
At a high level, the SENDIG is laid out in the same way as the SDTMIG.
It is organized to describe: Subject-related special-purpose domains (Section 5) General observation-class domains (Sections 6.1, 6.2 and
6.3) Trial design (Section 7) Relationships (Section 8)
SEND implementation guide and similarity to SDTM
SEND: A New Avenue of Data Standards
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Domain metadata models are displayed in exactly the same format as SDTM , comprising of columns for : Variable name Variable label Data type Controlled terminology or format Role
There are the same columns with information to sponsors: CDISC notes Core References
Domain Metadata Model
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• SEND utilizes an extensive set of controlled terminology that is maintained by CDISC and NCI EVS, and described outside of the implementation guide.
• SEND uses the same controlled terminology lists used for human clinical trials whenever possible.
Controlled Terminology
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SENDIG DOMAIN CONTENT
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Exclusivity for SEND
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Interventions and Events domain • The Interventions general-observation class has only one modelled
domain, Exposure. – Concomitant Medications and Substance Use do not apply to
toxicology studies, but Concomitant Medications may be relevant as SEND begins to be applied to veterinary-drug studies.
• The Events general-observation class has only one modelled domain, Disposition. – The Adverse Events, Medical History, and Protocol Deviations
domains have not been modelled in the SENDIG.
DIFFERENCES WITH SDTMIG
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Findings domain The Findings general-observation class contains a number of new domains: Body Weights Body Weight Gains Clinical Observations Death Diagnosis Food and Water Consumption Macroscopic Findings Microscopic Findings Organ Measurements Palpable Masses Tumour Findings
DIFFERENCES WITH SDTMIG
SEND: A New Avenue of Data Standards
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• Example values: LEFT, RIGHT
• Example values: DORSAL, VENTRAL
• Example values: CONSCIOUS, UNCONSCIOUS
• Y, N
• Example values: CORTEX, MEDULLA, MUCOSA
Findings domain LAT ---- Laterality .
DIR ---- Directionality
CSTATE ---- Consciousness State
SPCUFL ---- Specimen Usability for the Test
ANTREG ---- Anatomical Region
Some SEND-specific, non-clinical variable names
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Identifiers POOLID (Pool Identifier) : Used in place of USUBJID when measurements are collected for a group of animals rather than by Subject Timing Variables DETECT (Time in Days to Detection of Tumor) : Needed for the creation of the tumor.xpt file from SEND datasets from carcinogenicity studies
Demographics • SPECIES (Species) --- Example values: RAT, MOUSE
• STRAIN (Strain/Substrain) ---- Example values: FISCHER 344, B6C3F1
• AGETXT (Age Text) ---- Example value: 4-6 weeks
Some SEND-specific, non-clinical variable names (Contd.)
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Standard flow of submitting SEND data to FDA
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More Efficient: The SEND format enables more efficient review of nonclinical data, offering improved data quality, accessibility and predictability.
More Exchangeable : Common format for sharing non-clinical data One format for CROs to meet multiple sponsors need Support smooth data flow through department
processes/applications
More Reusable : Cross-study data mining efficiency Consistent data representation across drug projects Diagnosis analysis of collected data content To better predict future outcomes
Benefits of SEND
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SEND has major implications for drug development :
Noncompliance will result in a refusal to file from the FDA resulting in submission delays
Con’s for Non-compliance
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These formats are used by the FDA to analyze pharmaceutical submissions, giving the agency rapid and easy access to complex data
Utilization of SEND datasets result in faster FDA review and therefore faster time to approval
Along with analytical and visualization tools for SEND, it will be possible to query data rapidly across species, compounds and clinical and preclinical disciplines in ways that are not currently feasible, both on the part of the FDA and sponsors
Pro’s for Compliance
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Submit (Instem)
SENDView (Instem)
Savante (Xybion)
TransSEND (PDS)
and many more……
SOFTWARE TOOLS AVAILABLE
SEND: A New Avenue of Data Standards
• Disclaimer: Presenter has used the name of software vendor companies and software tools solely for representation purpose and disclaiming any bias for any of the vendors or tools.
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1. Guidance for Industry: Providing Regulatory Submissions in Electronic Format — NDAs. U.S. Department of Health and Human Services, Food and Drug Administration, Center for Drug Evaluation and Research (CDER). IT 3, January 1999.
2. Wood, F. (2008) The CDISC Study Data Tabulation Model (SDTM): History, Perspective, and Basics. PharmaSUG Proceedings, June 2008.
3. Federal Register Notice (2007). Electronic Nonclinical Study Data Submission; Notice of Pilot Project Vol. 72, No. 191,Wednesday, October 3, 2007.
4. Wood, F et al.(2011). The Standard for the Exchange of Nonclinical Data (SEND):History and Basics. PharmaSUG 2011 - Paper CD14
Acknowledgement for images: Shutterstock.com and other relevant images search
Reference
SEND: A New Avenue of Data Standards
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Contact information of Presenter : Arnab Goswami
Data Science, Statistics and Regulatory
IND-Biostatistics, QuintilesIMS , Bangalore
2nd Floor, Salarpuria Aura
Kadubeesanahalli, Bangalore
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