seminario pcr

38
Deisy Tatiana Sánchez Zapata Manuela Rincón Muñoz Facultad de Medicina 2013

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Page 1: Seminario PCR

Deisy Tatiana Sánchez ZapataManuela Rincón MuñozFacultad de Medicina

2013

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Micrografía electrónica de barrido de Staphylococcus aureus resistente a meticilina (MRSA, marrón), rodeada de restos celulares.

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Gram-positive bacteria.

Round (cocci)- grape like clusters.

40 different species• 9 2 subspecies• 1 3 subspecies

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Staphylococci grows on almost every bacteriological Medium.

Facultative anaerobic cocci.

Growth rate 5 - 25 °C.

Catalase.2 H2O2  2 H2O + O2

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Presence of B lactamase.

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Facultative anaerobic Gram-positive coccal bacterium.

S. aureus reproduces asexually by binary fission.

Catalase-positive differentiate

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Responsible for many infections, it can also be a commensal. nosocomial.

It can survive from hours to months dry environmental surfaces.

Infection hyaluronidase destroys tissues.

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Skin and mucous membrane infections benign

Folliculitis, furunculosis, conjunctivitis, cellulitis, deep abscesses, osteomyelitis,

meningitis, sepsis, endocarditis, pneumonia

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Narrow-spectrum beta-lactam antibiotic of the penicillin class.

Previously used to treat infections gram-positive bacteria.

Replaced by Oxacillin, flucloxacillin, dicloxacillin.

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Inhibition synthesis of bacterial cell walls.

Inhibits cross-linkage between the linear peptidoglycanpolymer chains that make up a major component of the cell wall of Gram-positive bacteria.

Binds to transpeptidase used to cross-link in peptidoglycan synthesis.

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Resistance difficult treatment dangerous.

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Characteristics

• Performance exponential• Duration• Specificity high• Detection capability det. Single DNA molec.• Fidelity clone w/out mutations

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Molecular diagnosis for MRSA nasal

Rapid detection and screening of MRSA

Colonization

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No. cepas de referencia 16S rRNA un mec A b luk S fem A Control interno

Staphylococcus spp. cepas ( n  = 7)1. S. aureus (ATCC 33591) + + - + +2. S. aureus (ATCC 43300) + + - + +3. S. aureus (ATCC 25923) d + - + + +4. S. aureus (ATCC 49775) + - + + +5. S. aureus (ATCC 51153) e + - - + +6. S. epidermidis (ATCC 14990) + - - - +7. ECN resistentes a la meticilina e + + - - +

Las bacterias Gram-positivos ( n  = 8)1. Streptococcus spp. Grupo A (ATCC 19615) e - - - - +

2. Streptococcus spp. Grupo B (ATCC 12401) e - - - - +

3. Streptococcus spp. Grupo G e - - - - +4. Bacillus subtilis (ATCC 6633) e - - - - +5. Listeria monocytogenes (ATCC 7644) e - - - - +6. Enterococcus faecium LMG 16192 c - - - - +7. Enterococcus faecalis (ATCC 29212) e - - - - +8. Corynebacterium spp. correo - - - - +

Patógenos entéricos gram-negativos ( n  = 15)1. Escherichia coli (EHEC) e - - - - +2. E. coli (EPEC) e - - - - +3. E. coli (ETEC) e - - - - +4. Klebsiella pneumoniae (ATCC 10031) e - - - - +5. Shigella sonnei (ATCC 25931) e - - - - +6. Shigella flexneri (ATCC 12022) e - - - - +7. Shigella boydii (ATCC 9207) e - - - - +8. Proteus mirabilis (ATCC 29245) e - - - - +9. Salmonella typhi correo - - - - +10. Pseudomonas aeruginosa (ATCC 27853) e - - - - +

11. Yersinia enterocolitica (ATCC 23715) e - - - - +12. Vibrio cholerae (O1 clásica) e - - - - +13. Citrobacter freundii (ATCC 8090) e - - - - +14. Gardnerella spp. correo - - - - +15. Candida albicans (ATCC 10231) e - - - - +

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Primers Secuencia del cebador (5'-3 ')

Objetivo Gene Gen Banco número de

acceso

Tamaño del producto

16S ARNr-F GCA AGC ATC GTT CGG AAT T

16S rRNA D83356 597 pb

16S ARNr-R CTT AAT GAT GGC AAC TAA GC

mec A-F ACG TCA AGT AGA TGC ATA TAA

mec A NC_003923M 293 pb

mec A-R CTT TTA AGT TCT GCG ATT GC

Luks -F CAG GAG GTA ATG TTG CAT TT

luk S AB186917 151 pb

Luks -R ATG TCC AGA CAT TAA TTT ACC

fem A-F CGA TCC ATA TTT ACC ATA TCA

fem A CP000255 450 pb

fem A-R ACG ATC CTC TTC GTT TAG TT

IC-F AGC GTC TGT CAT GAG A

hem M AF227752 759 pb

IC-R ATT CTC AGA TAT GTG TGG

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Molde de ADN, que van desde 100 ng a 1 pg.

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REFERENCE

WHAT THEY SAID? AGREE DESAGREE

 Rossney , Herra

and et al.

“The Thermostabilized PCR simpler and easier to use than real-time PCR”

Klatser , Kuijper and et al.

“The thermostabilized PCR has been used similarly for mycobacteria and Salmonella typhimurium”

Gillet , Issartel and et al.

“The Luks gene partly encodes PVL toxin, which is the main virulencefactor responsible for nosocomial “

Zhang K, McClure and et al.

“Detection of PVL toxin has been described and has proved useful for identifying strains of MRSA often associated with epidemics”

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• The molecular nasal diagnosis to identify MRSA , is important for the epidemiological level especially in nosocomial diseases.

• The thermostabilized PCR assay has many advantages: does not require cold chain, the less margin for error, makes a high-performance rapid analysis. The thermostabilized PCR assay is a very useful technique to identify MRSA one important pathogen in nosocomial infections

• Molecular methods like PCR facilitate early detection of MRSA patients and helps in infection control and prevention.

• Comparing other methods like chromogenic media with molecular methods explain why molecular methods take de lead in the implementation of antibiotics and reduced hospital bed stays.

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Gracias….