rulai.cshl.edurulai.cshl.edu/tissuespecclass/predictors.pdf · module feature motifname factor logo...
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Module Feature MotifName Factor LogoX1 PRODUCT M00084 MZF1
CATG
CATG
CTAG
ACGT
TG
GA
ATG
TG
ACG
ATG
TACG
GTA
TGCA
M00649 MAZTAGGT
GCGC
AGCAGG
M00922 SRFAC
TC
CGTA
GCAT
GA
GAT
GTAG
TA
AG
AG
TGCA
TACG
TGCA
AGCT
CATG
X2 SUM M00076 GATA-2ATCG
TACG
TCAG
CG
T
AC
TCTGA
ATCG
ATGC
ACTG
M00241 Nkx2-5GCA
TTAATAT
ACG
M00981 CREBATFTCAG
G
TGG
AA
TCGG
ACT
GTAC
CTGA
X3 SUM M00793 YY1ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG
M00962 ARCGAT
ATCG
GTA
CTAG
GTAC
CAG
TAC
TAG
CGAT
Table 1: TRANSFAC MARS predictor for AdiposeTissue.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.0273 FG by default+ 0.000431 f(X1 - 303.0) FG if X1 scores high- 0.0435 f(X2 - 18.7) BG if X2 scores high- 1.07 f(X3 - 22.4) BG if X3 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00800 AP-2
ACG
TGCCT
AGC
TGC
ATC
CAG
CAG
CG
GCC
ATG
TAG
CGTA
CAG
TACG
ATCG
M00808 PaxGC
CAT
ATG
ACTG
CTGA
TGA
TGAC
AT
TAC
GCTA
TAC
M00931 Sp-1CATG
C
AGGG
GTAC
CAT
GTG
TCAG
TACG
AGTC
X2 PRODUCT M00716 ZF5TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
GM00800 AP-2
ACG
TGCCT
AGC
TGC
ATC
CAG
CAG
CG
GCC
ATG
TAG
CGTA
CAG
TACG
ATCG
M01014 SOXATC
GTCA
TTTGAT
GT
CTA
AGCT
ACG
CGTA
X3 SUM M00716 ZF5TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
GM00761 p53decamer
TCGA
AGG
ATAGC
CGTA
CGTA
AGG
ACT
ATGC
AGTC
Table 2: TRANSFAC MARS predictor for AdiposeTissue.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.0416 BG by default- 0.00165 f(651.0 - X1) BG if X1 scores low+ 0.000183 f(X1 - 651.0) FG if X1 scores high+ 0.261 f(207.0 - X2) f(X1 - 651.0) FG if X2 scores low and X1 scores high+ 2.26E-7 f(X2 - 207.0) f(X1 - 651.0) FG if X2 scores high and X1 scores high+ 0.00989 f(11.6 - X3) f(X1 - 651.0) FG if X3 scores low and X1 scores high- 0.0000136 f(X3 - 11.6) f(X1 - 651.0) BG if X3 scores high and X1 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00734 CIZ C
GAAAAAT
CGA
AGCT
GTAC
M01010 HMGIYGCTA
TGAC
CAGT
CATG
ATGC
GCTA
GTA
GAT
CT
GAT
AGCT
GACT
ACT
CATG
CGTA
X2 PRODUCT M00255 GCCGTA
CTAG
C
ATG
AGGGT
AC
AG
TG
TAG
CATG
GTC
AGCT
CATG
M00469 AP-2α GCCAGTC
ATCG
TCAG
TCAG
TCAG
ATCG
M00974 SMADGACT
CTGA
ACTG
ATGC
TCAGC
GACG
CTA
ATCG
X3 MAX M00690 AP-3ACTCC
TGCA
CAAG
CT
CAT
Table 3: TRANSFAC MARS predictor for AdrenalGland.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.0784 BG by default+ 0.00466 f(158.0 - X1) FG if X1 scores low+ 0.0349 f(X1 - 158.0) FG if X1 scores high- 0.000253 f(1430.0 - X2) f(10.2 - X3) BG if X2 scores low and X3 scores low- 0.000536 f(1430.0 - X2) f(X3 - 10.2) BG if X2 scores low and X3 scores high
Module Feature MotifName Factor LogoX1 SUM M00189 AP-2
GAC
ATG
TCCT
CACG
AGC
TGAC
ACTG
ACG
GAC
ATCG
M00322 c-Myc-MaxTACG
TGCCT
GAT
CAG
ATCGT
AGC
ATCG
M00803 E2FCG
CGCGG
CACTG
Table 4: TRANSFAC MARS predictor for AdrenalGland.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.288 FG by default- 0.066 f(29.2 - X1) BG if X1 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00033 p300
CAGT
GTAC
TCGA
CTAG
AG
CATG
CGTA
CTG
AT
CATG
GCTA
ACTG
GACT
ATCG
M00087 Ik-2TACG
CGAT
ACGT
ACT
AGGGAG
CTA
GCAT
TCGA
TGAC
M00141 Lyf-1CGT
CT
ACT
AG
AG
CGG
ATAGG
AX2 PRODUCT M00185 NF-Y
ACGT
CGA
CTGACCAG
CATT
AGC
TGA
ATGC
M00749 SREBP-1 CACAGCCT
CAX3 PRODUCT M00808 Pax
GC
CAT
ATG
ACTG
CTGA
TGA
TGAC
AT
TAC
GCTA
TAC
M00963 T3RGTAC
ATGC
AGCT
TACG
GCAT
GACC
GCT
ACGT
Table 5: TRANSFAC MARS predictor for Amygdala.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.572 BG by default+ 0.00117 f(1130.0 - X1) FG if X1 scores low+ 0.000387 f(X1 - 1130.0) FG if X1 scores high+ 0.00687 f(121.0 - X2) FG if X2 scores low+ 0.0174 f(X2 - 121.0) FG if X2 scores high- 0.0000553 f(X3 - 95.8) f(1130.0 - X1) BG if X3 scores high and X1 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00482 PITX2CAT
CAGTTC
AGA
GTCA
GC
AC
CGTA
CGA
Table 6: TRANSFAC MARS predictor for Amygdala.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.65 BG by default+ 0.00852 f(161.0 - X1) FG if X1 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00394 Msx-1
GATC
AGTC
ATCG
ACGT
CGTA
CTA
CGAT
CGT
ACTG
M00652 Nrf-1 CAGCT
GATGCGCG
AM01002 DEAF1
TCAG
TGAC
CTAG
CTAG
TCAG
ACT
AGTCC
GATG
ACTG
CGAT
TCGA
CAGTC
TAGTT
CTCC
GCATG
CTAG
CGA
CAGT
ACTG
GACT
Table 7: TRANSFAC MARS predictor for BoneMarrow.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.135 BG by default+ 0.00296 f(268.0 - X1) FG if X1 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00652 Nrf-1 CA
GCTGATGCGCG
AM00803 E2F
CG
CGCGG
CACTG
M00965 LXR-PXR-COUPGCT
TAG
GCTA
TAC
ATC
CGT
AGTC
AGCT
GTCA
ATGC
ACGT
TAG
GTCA
GAC
AGTC
AGTC
GATC
X2 MAX M00200 CCAATTCGACCAAC
AT
TAC
TCA
TGCA
TC
GCAT
ATGC
CTAGCG
ACT
GCT
TGC
GACT
TC
CTAG
ATC
GCAT
GCAT
TAC
CGT
Table 8: TRANSFAC MARS predictor for BoneMarrow.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.273 BG by default+ 0.00111 f(735.0 - X1) FG if X1 scores low- 0.0000939 f(735.0 - X1)(X2 + 6.67) BG if X1 scores low and X2 scores high
Module Feature MotifName Factor LogoX1 SUM M00017 ATF
GTAC
ACGT
TACGTGACGG
CAT
GTAC
CGTA
TACG
AGTC
AGTC
M00032 c-Ets-1CGTA
AC
TACGGAC
TA
CAG
ACT
TCGA
M00793 YY1ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG
X2 SUM M00446 Spz1ATG
ATGC
GTCA
CG
CG
CTGA
CG
CG
ACTG
CAT
CGTA
CAGT
CATG
ATCG
TAGC
M00993 TAL1AGTCCAC
GTCTGA
GTC
CT
X3 PRODUCT M00032 c-Ets-1CGTA
AC
TACGGAC
TA
CAG
ACT
TCGA
M00804 E2AATGCCC
AAGC
TACTGA
GCT
ATC
ACGT
AGTC
CGTA
CTG
ACTG
Table 9: TRANSFAC MARS predictor for CD4TCells.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.354 BG by default+ 0.0831 f(X1 - 25.8) FG if X1 scores high+ 0.0377 f(25.8 - X1) f(17.6 - X2) FG if X1 scores low and X2 scores low- 0.0227 f(25.8 - X1) f(X2 - 17.6) BG if X1 scores low and X2 scores high+ 0.0318 f(61.4 - X3) FG if X3 scores low+ 0.00632 f(X3 - 61.4) FG if X3 scores high
Module Feature MotifName Factor LogoX1 SUM M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00482 PITX2CAT
CAGTTC
AGA
GTCA
GC
AC
CGTA
CGA
Table 10: TRANSFAC MARS predictor for CD4TCells.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.3 BG by default+ 0.0756 f(X1 - 14.8) FG if X1 scores high
Module Feature MotifName Factor LogoX1 SUM M00743 c-Ets-1
GC
GCAGGAT
AGTC
M00793 YY1ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG
X2 PRODUCT M00227 v-MybAGCT
TAGC
CTAAC
CTGGA
TC
M00691 ATF-1 CGCT
AGTC
CGT
CGAA
CGAT
AC
TA
Table 11: TRANSFAC MARS predictor for CD8TCells.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.495 FG by default- 0.0788 f(24.5 - X1) BG if X1 scores low- 0.00355 f(24.5 - X1) f(45.1 - X2) BG if X1 scores low and X2 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00317 PolyAGTAC
CATG
GTAC
TCGTGA
GT
CTG
CTG
AT
AGTC
ACT
TGAC
GTA
GCT
AGTC
M00761 p53decamerTCGA
AGG
ATAGC
CGTA
CGTA
AGG
ACT
ATGC
AGTC
Table 12: TRANSFAC MARS predictor for CD8TCells.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.639 FG by default- 0.000761 f(1680.0 - X1) BG if X1 scores low
Module Feature MotifName Factor LogoX1 SUM M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00128 GATA-1CTGA
ACGT
TGAC
CGTAGATAC
TGA
TCAG
CTAG
TCAG
ATCG
M00622 C/EBPγATC
CT
GTCAC
TGT
AT
AC
TA
CAGAG
TA
CAT
X2 SUM M00084 MZF1CATG
CATG
CTAG
ACGT
TG
GA
ATG
TG
ACG
ATG
TACG
GTA
TGCA
M00720 CAC-bindAGG
ATGGC
GATGGC
GX3 SUM M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00777 STATACTG
CTGA
GATC
CGAT
AGCTTG
TCGCT
CATG
AG
ATG
TCGA
Table 13: TRANSFAC MARS predictor for Cerebellum.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.7 BG by default+ 0.0327 f(41.2 - X1) FG if X1 scores low+ 1.86 f(X1 - 41.2) FG if X1 scores high+ 0.0923 f(17.4 - X2) FG if X2 scores low+ 0.113 f(X2 - 17.4) FG if X2 scores high- 0.0212 f(X2 - 17.4) f(X3 - 17.5) BG if X2 scores high and X3 scores high
Module Feature MotifName Factor LogoX1 SUM M00716 ZF5
TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
GM00720 CAC-bind
AGG
ATGGC
GATGGC
GX2 MAX M00036 v-Jun
GTAC
AGTC
TAG
GATGACGTCAG
CTG
ATC
AGTC
ATC
X3 PRODUCT M00070 Tal-1βATCG
ATCG
ATCG
TGA
T
GCACAT
GC
GATG
CTG
CT
AGTC
GCAT
ATGC
M00729 Cdx-2CA
CGAT
CTA
ACTG
AGT
CT
ATA
TACTA
GT
AG
TC
ATC
Table 14: TRANSFAC MARS predictor for Cerebellum.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.245 FG by default- 0.0692 f(23.1 - X1) BG if X1 scores low- 0.17 f(X1 - 23.1) BG if X1 scores high+ 0.0686 f(3.5 - X2) FG if X2 scores low+ 0.0715 f(X2 - 3.5) FG if X2 scores high- 0.0131 f(23.3 - X3) BG if X3 scores low- 0.00434 f(X3 - 23.3) BG if X3 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00695 ETF
TGA
GC
TGGA
CCGG
M00803 E2FCG
CGCGG
CACTG
X2 PRODUCT M00695 ETFTGA
GC
TGGA
CCGG
M00793 YY1ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG
X3 MAX M00801 CREBAGTC
C
T
A
GC
TCC
T
AACGT
Table 15: TRANSFAC MARS predictor for DorsalRootGanglia.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.314 FG by default- 0.0439 f(X1 - 79.5) BG if X1 scores high- 0.0146 f(X2 - 86.4) BG if X2 scores high+ 0.112 f(9.82 - X3) FG if X3 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00469 AP-2α GCCA
GTC
ATCG
TCAG
TCAG
TCAG
ATCG
M00716 ZF5TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
GM00927 AP-4
CAG
GTAC
GC
CTA
CG
AGCTGA
TC
Table 16: TRANSFAC MARS predictor for DorsalRootGanglia.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.194 FG by default- 0.00161 f(730.0 - X1) BG if X1 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00133 Tst-1
ACTG
CTAG
CTG
ACG
TAT
ATAT
CTA
ACG
CGA
ACG
CGT
AGT
ATCG
M00136 Oct-1TCGA
CGAT
ACTG
TGCA
CGTA
C
ATAC
TC
TG
T
CCTGA
GCAT
CAGT
GACT
GCTA
M00729 Cdx-2CA
CGAT
CTA
ACTG
AGT
CT
ATA
TACTA
GT
AG
TC
ATC
X2 PRODUCT M00002 E47GAC
AGC
CTAG
AGCAGA
CGTGG
TAGTC
AGTC
ATCG
AGTC
M00701 SMAD-3ACT
AGG
TCCTGA
CTCA
CT
M00810 SRFATGC
ACC
CTGA
CAT
TGA
CGAT
GTA
GTA
A
GA
GTGCA
TACG
TGCA
ACGT
CTAG
ACTG
ACGT
X3 PRODUCT M00646 LF-A1 GGAG
ACG
ATCT
AAG
M00959 ERTGAC
CGA
ATGG
AGT
AGC
CTAA
GTC
TACG
TACG
GACT
M01009 HES1CTGA
TCGA
ACG
TCG
ACG
TGTCGTGT
CG
ATGC
AGCT
GTAC
CTAG
Table 17: TRANSFAC MARS predictor for Heart.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.0395 BG by default+ 0.000331 f(1110.0 - X1) FG if X1 scores low- 0.000839 f(903.0 - X2) BG if X2 scores low- 0.0000148 f(390.0 - X3) f(1110.0 - X1) BG if X3 scores low and X1 scores low+ 0.00000108 f(X3 - 390.0) f(1110.0 - X1) FG if X3 scores high and X1 scores low
Module Feature MotifName Factor LogoX1 SUM M00157 RORα2
CGTA
GATAT
AATCGTG
AGGTCATCGA
M00231 MEF-2AGCT
ATGC
ATGC
ATCG
CATG
CGAT
CATG
AGTC
ACTT
ATA
TA
TAT
ATAAG
TGAC
GCTA
GATC
GTAC
GACT
M00766 LXRCTGC
AACCC
TG
ATCG
GATC
CGTA
ACTGTG
AAACCC
X2 SUM M00314 GEN-INIATGC
ATGC
AGCT
TCAC
AGT
GAT
AGTC
M00712 myogenin AG
ACGCAT
GTCGTG
M00743 c-Ets-1GC
GCAGGAT
AGTC
X3 PRODUCT M00423 FOXJ2CGA
ACT
AC
TAC
TAACT
GA
CGT
CT
GT
AGT
ACGT
M00985 Stra13ATGC
AGCT
TACG
CGTCAT
CGTGTCAT
GC
AGTC
CGTA
Table 18: TRANSFAC MARS predictor for Heart.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.31 BG by default+ 0.0241(X1 + 1.9) FG if X1 scores high- 0.248 f(21.3 - X2) BG if X2 scores low- 0.00181 f(52.0 - X3) f(X2 - 21.3) BG if X3 scores low and X2 scores high- 0.000767 f(X3 - 52.0) f(X2 - 21.3) BG if X3 scores high and X2 scores high
Module Feature MotifName Factor LogoX1 SUM M00413 AREB6
CGTA
GACT
GCATCACCTA
CTG
GCAT
GCTA
AGTC
M00526 GCNFTGAC
ACGT
TAGC
CTGA
GTA
A
GC
GTTCAC
ATG
AC
GT
ACGT
TC
CGTAG
TAC
AGTC
M00769 AMLTGCA
CGTA
TACG
CGT
GACT
CTGC
TGGCGT
AGCT
GAT
TACG
GATC
X2 SUM M00196 Sp1TCAG
TCAG
CATG
AGG
C
GTAC
A
T
CG
TG
CTAG
TCAG
AGTC
ATGC
M00243 Egr-1CGTA
CAGT
AG
T
CA
GC
GTA
GGGTACGG
TM00734 CIZ C
GAAAAAT
CGA
AGCT
GTAC
X3 SUM M00063 IRF-2CGAT
AAACGC
TGAAAGC
GTC
M00794 TTF-1GTAC
GTAC
ATGC
GACT
ATGC
TAG
AA
GCGAT
TCAG
ATCG
AGTC
Table 19: TRANSFAC MARS predictor for Hypothalamus.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.0285 BG by default- 0.0323 f(X1 - 20.0) BG if X1 scores high+ 0.00257 f(X2 - 18.7) f(23.7 - X3) FG if X2 scores high and X3 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00491 MAZR
CTAG
ACG
TCAG
ATG
AG
TAGG
A
GGGTAC
GTAC
TGCA
M00652 Nrf-1 CAGCT
GATGCGCG
AM00695 ETF
TGA
GC
TGGA
CCGG
X2 PRODUCT M00239 v-ErbAACG
GCTA
ACGT
GT
CAG
GAGGTCAA
TC
ATCG
AGC
AGTC
GTCA
M00492 STAT1ATGC
TCGA
GACT
A
C
G
TA
G
CT
G
TAC
A
G
T
CA
T
CG
M00515 PPARGTCA
TA
TACG
ACTG
AGC
GGT
AGCAG
ATC
ATCG
ACTGTT
ACG
GCACCC
TCTA
TAGC
GAT
AT
X3 PRODUCT M00136 Oct-1TCGA
CGAT
ACTG
TGCA
CGTA
C
ATAC
TC
TG
T
CCTGA
GCAT
CAGT
GACT
GCTA
M00695 ETFTGA
GC
TGGA
CCGG
Table 20: TRANSFAC MARS predictor for Hypothalamus.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.523 FG by default- 0.00113 f(592.0 - X1) BG if X1 scores low- 0.000505(X2 + 190.0) BG if X2 scores high- 0.00465 f(145.0 - X3) BG if X3 scores low
Module Feature MotifName Factor LogoX1 SUM M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00652 Nrf-1 CAGCT
GATGCGCG
AM01010 HMGIY
GCTA
TGAC
CAGT
CATG
ATGC
GCTA
GTA
GAT
CT
GAT
AGCT
GACT
ACT
CATG
CGTA
X2 PRODUCT M00083 MZF1CTGA
CTAG
ACGTGA
TG
TGGC
GA
M00319 MEF-3 TG
CGC
GTCAGGCTTA
TTC
CGTA
M00646 LF-A1 GGAG
ACG
ATCT
AAG
X3 PRODUCT M00025 Elk-1AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00402 MEF-2AGT
ATGC
AT
CATTAT
AGCA
CAT
CA
Table 21: TRANSFAC MARS predictor for Kidney.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 1.53 FG by default- 0.0513 f(X1 - 8.84) BG if X1 scores high- 0.000397 f(1640.0 - X2) BG if X2 scores low- 0.352 f(1640.0 - X2) f(8.47 - X3) BG if X2 scores low and X3 scores low- 0.00000362 f(1640.0 - X2) f(X3 - 8.47) BG if X2 scores low and X3 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00134 HNF-4
CGTA
TAGC
CTGA
CTAG
TAG
CATG
ACGT
AGTC
CTGA
GA
TGA
TAG
CATG
ACGT
GTC
TCGA
GTAC
CTAG
CGTA
M00469 AP-2α GCCAGTC
ATCG
TCAG
TCAG
TCAG
ATCG
M00792 SMADCGA
TG
CTA
TC
GCTA
TGC
AGTC
GTAC
AGCT
X2 SUM M00134 HNF-4CGTA
TAGC
CTGA
CTAG
TAG
CATG
ACGT
AGTC
CTGA
GA
TGA
TAG
CATG
ACGT
GTC
TCGA
GTAC
CTAG
CGTA
M00684 XPF-1GTCG
AT
TGG
ATAG
CGAC
AGC
M00792 SMADCGA
TG
CTA
TC
GCTA
TGC
AGTC
GTAC
AGCT
Table 22: TRANSFAC MARS predictor for Kidney.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.177 FG by default- 0.00305 f(653.0 - X1) BG if X1 scores low- 0.00563 f(X1 - 653.0) f(26.2 - X2) BG if X1 scores high and X2 scores low
Module Feature MotifName Factor LogoX1 SUM Novel1 None
TGC
ACT
ACGCCA
TGGGNovel2 None CT
AGAG
ACG
ACA
TGAGG
Novel3 None CATCT
AGAGGA
CCTC
X2 SUM Novel6 None TCGCC
GGCA
CTG
CGCG
Novel7 NoneGA
GTTA
TGCTTA
TCA
GAT
AX3 PRODUCT Novel4 None
AGC
GCTC
CGA
CGGCGNovel5 None ACA
TTTTCAA
Table 23: DME+TRANSFAC MARS predictor for Liver.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.195 FG by default+ 0.038(X1 - 13.5) FG if X1 scores high- 0.0304(X2 + 0.417) BG if X2 scores high- 0.00354(X3 + 9.26) BG if X3 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00332 Whn
CGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT
M00716 ZF5TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
GX2 SUM M00042 Sox-5
GACT
GCAT
GTA
GA
TCAC
ATCTGA
ATGC
M00716 ZF5TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
G
Table 24: TRANSFAC MARS predictor for Liver.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.368 FG by default- 0.00125 f(X1 - 6.54) f(X2 - 11.8) BG if X1 scores high and X2 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00162 Oct-1
AGC
GTA
CGAT
CTA
CTATG
TGTA
AGCATT
AG
CT
CGAT
M00639 HNF-6CTA
CGTA
GTAAG
ATCCAATT
CGA
CGTA
M00802 Pit-1GCTA
TCA
AT
CGTCC
TA
AT
CTGA
CTA
GAT
CGT
CGA
CAT
GCTA
GATC
GTCA
GATC
CTA
X2 SUM M00008 Sp1CATG
CTAGGGT
GC
TAG
CTG
ATG
ATCG
CAT
M00701 SMAD-3ACT
AGG
TCCTGA
CTCA
CT
Table 25: TRANSFAC MARS predictor for Lung.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.48 BG by default+ 0.00101 f(1560.0 - X1) FG if X1 scores low- 0.0000905 f(23.0 - X2) f(1560.0 - X1) BG if X2 scores low and X1 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00665 Sp3 AT
CG
TAC
AC
CGT
AGT
CG
TGGA
CG
CGA
AG
CGG
M00720 CAC-bindAGG
ATGGC
GATGGC
GM00915 AP-2
TGC
TACG
ATCG
ATGC
GTC
GTAC
ATGC
ATGC
TCGA
CGC
GGCA
TGC
X2 SUM M00138 Oct-1CAGT
GACT
CGTA
ACGT
CTAG
CGTA
CGAT
GCAT
T
GCA
CGT
C
ATG
GATC
CTA
GTA
C
GA
C
GAT
GCAT
GCTA
CGTA
CGTA
GTCA
ATCG
CGTA
M00451 NKX3ACGAT
CGAT
CGTA
ACT
TA
CA
TGTG
AACT
GTA
GCAT
M00463 POU3F2TCA
CTA
GACATA
TAT
TA
ATTA
TCAT
X3 MAX M00947 CP2-LBP-1c-LSFTAG
GC
AT
TG
CGA
CGT
AGCT
GACT
ACTG
TGAC
CTAG
GC
AGCT
CATG
CG
Table 26: TRANSFAC MARS predictor for Lung.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.421 FG by default- 0.000566 f(1210.0 - X1) BG if X1 scores low+ 0.000263 f(X1 - 1210.0) FG if X1 scores high+ 0.0693 f(13.2 - X2) FG if X2 scores low- 0.0236 f(X2 - 13.2) BG if X2 scores high+ 0.0083 f(13.2 - X2) f(5.92 - X3) FG if X2 scores low and X3 scores low- 0.0377 f(13.2 - X2) f(X3 - 5.92) BG if X2 scores low and X3 scores high
Module Feature MotifName Factor LogoX1 SUM M00419 MEIS1
GATC
GCTA
TCAG
AGTG
GTACAA
TCG
CTAG
CAGT
ATGC
M00658 PU.1GTA
CG
CGA
AGGAAA
CG
M00806 NF-1GCAT
CGAT
TCAG
CTAG
GTCA
GACT
GCTA
TGAC
ACGT
CGAT
CTG
GT
CAC
CTA
TGA
CATG
TCGA
X2 SUM M00059 YY1ACTG
TCGA
CGAT
ATGC
CGAT
AGTCCC
AGTC
GAT
ACGT
GCAT
ACGT
ACTG
TCAG
CGTA
ATGC
M00235 AhR-ArntAGT
CGAT
CGTA
CATG
CTAG
CATG
CAGT
AGCT
TG
TCGTGT
AC
TAC
ACG
M00774 NF-κBACTG
ACTG
GTAC
ACTG
ACTG
CTAG
TAG
T
GA
CGA
CGAC
AGT
GACT
ATC
T
CTAC
ATGC
Table 27: TRANSFAC MARS predictor for LymphNode.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.375 BG by default+ 0.0816 f(X1 - 27.5) FG if X1 scores high+ 0.0362 f(X2 - 18.6) FG if X2 scores high
Module Feature MotifName Factor LogoX1 SUM M00466 HIF-1
GTAC
CAG
ACGT
GACGTGA
GC
TACG
CTG
CGT
M00801 CREBAGTC
C
T
A
GC
TCC
T
AACGT
M00803 E2FCG
CGCGG
CACTG
X2 SUM M00035 v-MafCGTA
CGAT
GCTA
GACT
TAG
TAC
ACT
ACTG
GAT
CACGT
TGAC
C
GTA
ATG
TAGC
TCGA
GATC
TGCA
TGCA
M00277 Lmo2ATGC
ATCG
TAGCCAA
TG
ACGTGG
TC
GCAT
ATCG
M00658 PU.1GTA
CG
CGA
AGGAAA
CG
X3 PRODUCT M00466 HIF-1GTAC
CAG
ACGT
GACGTGA
GC
TACG
CTG
CGT
M00801 CREBAGTC
C
T
A
GC
TCC
T
AACGT
Table 28: TRANSFAC MARS predictor for LymphNode.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.898 FG by default- 0.0788 f(20.3 - X1) BG if X1 scores low- 0.103 f(X1 - 20.3) BG if X1 scores high- 0.0547 f(36.0 - X2) BG if X2 scores low- 0.0498 f(X1 - 20.3) f(45.2 - X3) BG if X1 scores high and X3 scores low
Module Feature MotifName Factor LogoX1 SUM M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00803 E2FCG
CGCGG
CACTG
M00961 VDRTGAC
AGTC
ATCG
ACTG
ACTG
ACGT
TACG
CGA
GCA
ATGC
AGTC
GATC
X2 SUM M00444 VDRAGA
GTGG
TTACG
CGTA
CAG
ACTG
CTAG
TAG
AGT
GCGAT
TCG
CGTA
M00935 NF-ATATCG
GCATG
A
GAGA
CTA
GTCA
GCAT
AGCT
X3 SUM M00025 Elk-1AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00155 ARP-1CT
CG
CAA
GGTC
TCT
CACTTGG
AGAC
AC
TC
GTC
AT
Table 29: TRANSFAC MARS predictor for OlfactoryBulb.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.224 FG by default- 0.0969 f(X1 - 22.9) BG if X1 scores high+ 0.0632 f(X2 - 16.3) FG if X2 scores high- 0.15 f(15.4 - X3) BG if X3 scores low- 0.044 f(X3 - 15.4) BG if X3 scores high
Module Feature MotifName Factor LogoX1 SUM M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00422 FOXJ2GCAT
GCAT
GTCA
GCAT
GCA
CTGA
GAC
TAAATC
GAG
CAT
GCAT
GATC
GTCA
CGTA
M00482 PITX2CAT
CAGTTC
AGA
GTCA
GC
AC
CGTA
CGA
X2 SUM M00626 RFX1 AC
AG
AT
CT
GA
AC
GCT
CTA
TG
AGG
CGTA
CAA
CM00720 CAC-bind
AGG
ATGGC
GATGGC
GX3 PRODUCT M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00415 AREB6TGAC
CGTGTTTG
CCGAT
CATG
Table 30: TRANSFAC MARS predictor for OlfactoryBulb.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.157 FG by default- 0.0619 f(X1 - 12.0) BG if X1 scores high+ 0.00366 f(X2 - 10.5) f(X1 - 12.0) FG if X2 scores high and X1 scores high+ 0.00624 f(143.0 - X3) FG if X3 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00428 E2F-1
AGCT
CGT
ATG
CCG
GC
CG
TGC
M00695 ETFTGA
GC
TGGA
CCGG
M00793 YY1ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG
X2 PRODUCT M00652 Nrf-1 CAGCT
GATGCGCG
AM00976 AHRHIF
ACGT
AG
A
CGTGGTAC
ATCG
TACG
Table 31: TRANSFAC MARS predictor for Ovary.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.857 BG by default+ 0.00101 f(1140.0 - X1) FG if X1 scores low+ 0.00427 f(166.0 - X2) FG if X2 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00189 AP-2
GAC
ATG
TCCT
CACG
AGC
TGAC
ACTG
ACG
GAC
ATCG
M00716 ZF5TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
GX2 PRODUCT M00412 AREB6
GACT
GCTA
GTC
CAGT
ACTACCTGC
GAT
ACG
AGCT
M00802 Pit-1GCTA
TCA
AT
CGTCC
TA
AT
CTGA
CTA
GAT
CGT
CGA
CAT
GCTA
GATC
GTCA
GATC
CTA
X3 SUM M00144 BSAPCAG
GA
TAC
ACG
GAT
AG
GTA
ACGT
GAT
GCT
GTC
CT
ACTG
GA
GAGCGG
TAG
TACA
CG
GA
CT
CGTA
ACG
TAC
M00716 ZF5TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
G
Table 32: TRANSFAC MARS predictor for Ovary.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.567 FG by default- 0.0219 f(74.5 - X1) BG if X1 scores low- 0.0036 f(X2 - 19.4) BG if X2 scores high- 0.0264 f(X1 - 74.5) f(13.6 - X3) BG if X1 scores high and X3 scores low
Module Feature MotifName Factor LogoX1 SUM M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00489 Nkx6-2CTAG
CAT
TGA
GTATAAA
TAGT
CGTA
ACGT
ACGT
M00976 AHRHIFACGT
AG
A
CGTGGTAC
ATCG
TACG
X2 PRODUCT M00444 VDRAGA
GTGG
TTACG
CGTA
CAG
ACTG
CTAG
TAG
AGT
GCGAT
TCG
CGTA
M00511 ERRαCGTA
ACTG
GTCA
CGAT
TGAC
CTGA
CTAGGA
TGC
CTAA
GCT
CGTA
M00698 HEB AGCCT
AGCTGTable 33: TRANSFAC MARS predictor for Pancreas.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.88 FG by default- 0.0588 f(X1 - 16.4) BG if X1 scores high- 0.000765 f(1150.0 - X2) BG if X2 scores low
Module Feature MotifName Factor LogoX1 MAX M00803 E2F
CG
CGCGG
CACTG
Table 34: TRANSFAC MARS predictor for Pancreas.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.532 FG by default- 0.265 f(X1 - 6.52) BG if X1 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00251 XBP-1
CTGA
ACGT
CTAG
GTCA
GCAT
ACTGACGTC
AG
CAGT
GATC
GTAC
GACT
GTA
CAGT
M00257 RREB-1ACCA
CCACAC
ATACA
CCA
AC
ACA
CGTAC
M00651 NF-muE1GCC
GGCCATTC
GT
Table 35: TRANSFAC MARS predictor for Pituitary.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.247 FG by default- 0.000895 f(752.0 - X1) BG if X1 scores low
Module Feature MotifName Factor LogoX1 SUM M00249 CHOP-C/EBPα
TCGA
CTAG
CTGA
CT
T
GTAC
CA
GCAC
TTGAC
TAGC
GTC
AGTC
M00329 Pax-9 AG
TA
CGT
GA
GTC
CG
TCAA
CTG
AGTCGC
GTA
AGTGG
AC
AG
ACT
AG
CAG
ATC
GC
GTA
GC
ATC
M00761 p53decamerTCGA
AGG
ATAGC
CGTA
CGTA
AGG
ACT
ATGC
AGTC
X2 PRODUCT M00460 STAT5AACT
CGAT
AC
ATGC
GTAC
TCGA
AT
GGTA
GAG
CAT
AGCT
ACTG
ATGC
ACTG
CGAT
ACT
CGAT
TAC
ATGC
ACGT
TCGA
TCAG
CTGA
CAG
M00727 SF-1GT
TAG
GACCTTG
M00775 NF-YTAGC
GTAC
AGCT
AGCT
TCGA
CAGC
AG
CACTA
CGT
TAGC
TCGA
Table 36: TRANSFAC MARS predictor for Pituitary.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.245 BG by default+ 0.000074 f(X1 - 17.8) f(982.0 - X2) FG if X1 scores high and X2 scores low
Module Feature MotifName Factor LogoX1 SUM M00446 Spz1
ATG
ATGC
GTCA
CG
CG
CTGA
CG
CG
ACTG
CAT
CGTA
CAGT
CATG
ATCG
TAGC
M00491 MAZRCTAG
ACG
TCAG
ATG
AG
TAGG
A
GGGTAC
GTAC
TGCA
X2 PRODUCT M00465 POU6F1CAG
TAC
TA
AT
CTA
CGAA
TTATAG
TM00630 FOXM1 AA
GCTA
AT
AGT
CG
TA
TCGT
M00639 HNF-6CTA
CGTA
GTAAG
ATCCAATT
CGA
CGTA
X3 PRODUCT M00420 MEIS1AHOXA9 TAG
GA
GCC
AGACGTTC
GT
GAT
CTA
ATC
TAG
GA
M00510 Lhx3TGCA
CGTA
GTTAAC
TAG
CT
CTA
CGTA
M00630 FOXM1 AAG
CTA
AT
AGT
CG
TA
TCGT
Table 37: TRANSFAC MARS predictor for Placenta.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.373 FG by default- 0.0545 f(25.7 - X1) BG if X1 scores low- 0.00549 f(107.0 - X2) BG if X2 scores low- 0.000306 f(X2 - 107.0) BG if X2 scores high+ 0.00113 f(476.0 - X3) FG if X3 scores low+ 0.000333 f(X3 - 476.0) FG if X3 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00102 CDP
CGAT
GCTA
CAGTATA
TCGATG
ACT
C
T
GA
CAGT
G
ACT
CGAT
GCAT
M00920 E2FGACT
ACGT
TAGC
TCGCGG
CTGC
GA
GCA
CTGA
GATC
M00979 PAX6GAC
AGTGG
TA
GC
AGC
CTT
GTG
CGTA
GA
ATGC
ACGT
GTAC
Table 38: TRANSFAC MARS predictor for Placenta.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.212 FG by default- 0.000557(X1 + 94.4) BG if X1 scores high
Module Feature MotifName Factor LogoX1 SUM M00932 Sp-1
TCGA
TCAG
CATG
AGGG
G
TAC
ACTG
TG
TCAG
TCAG
AGTC
ATGC
M00975 RFXAGC
ACTGA
TTCG
TAC
TGC
CTGA
X2 PRODUCT M00410 SOX-9GCAT
CTGA
CGTA
CTAG
CGTA
GCTACAAA
TCTAG
TCAG
CTAG
CGTA
M00418 TGIFTA
ACG
GTCTGTCT
AACTG
CGAT
GTA
M00478 Cdc5CG
CGTA
AGT
AGT
ATAC
TA
ATC
TGA
ACT
CGA
GTA
X3 SUM M00932 Sp-1TCGA
TCAG
CATG
AGGG
G
TAC
ACTG
TG
TCAG
TCAG
AGTC
ATGC
M00992 FOXP3 AG
TA
CGA
CAG
AGT
TG
CTTA
TG
AT
CGT
AGTCT
ATG
GA
GTC
Table 39: TRANSFAC MARS predictor for Prostate.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.61 FG by default- 0.107 f(23.9 - X1) BG if X1 scores low- 0.314 f(X1 - 23.9) BG if X1 scores high- 0.0321 f(42.3 - X2) BG if X2 scores low- 0.000942 f(X2 - 42.3) BG if X2 scores high+ 0.0000643 f(31.5 - X3) f(X2 - 42.3) FG if X3 scores low and X2 scores high+ 0.00729 f(X3 - 31.5) f(X2 - 42.3) FG if X3 scores high and X2 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00793 YY1
ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG
M00803 E2FCG
CGCGG
CACTG
X2 PRODUCT M00086 Ik-1CTAG
ACT
ACGT
GACT
AGGGAT
AGACT
CTGA
GATC
AGTC
M01011 HNF1GCTA
CATG
GATC
CGTA
CTAG
GACT
GACT
T
GA
G
CTA
CGAT
GCTA
G
TA
ACGT
CGAT
G
CTA
C
T
GA
TAGC
GATC
GCAT
CAGT
CTGA
Table 40: TRANSFAC MARS predictor for Prostate.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.218 BG by default+ 0.0000963 f(X1 - 28.3) f(131.0 - X2) FG if X1 scores high and X2 scores low
Module Feature MotifName Factor LogoX1 SUM M00100 CdxA
GTCA
GAT
ATG
AT
TCGA
GCAT
TCAG
M00159 C/EBPCGAT
TCAG
GAT
AGT
AGTGA
TCG
CGAT
CGTA
TA
TCAG
ACGT
AGCT
M00624 DBP ATGCT
ACTA
CTA
TAC
X2 PRODUCT M00695 ETFTGA
GC
TGGA
CCGG
M00939 E2F-1GACT
AGT
AGCT
ACG
CGCGG
CACTG
Table 41: TRANSFAC MARS predictor for SalivaryGland.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.667 BG by default+ 0.133 f(X1 - 22.8) FG if X1 scores high+ 0.00898 f(102.0 - X2) FG if X2 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00743 c-Ets-1
GC
GCAGGAT
AGTC
M00918 E2FAGCT
AGT
AGCTC
GCGCGG
CATCG
Table 42: TRANSFAC MARS predictor for SalivaryGland.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.251 BG by default+ 0.0121 f(85.9 - X1) FG if X1 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00695 ETF
TGA
GC
TGGA
CCGG
M00743 c-Ets-1GC
GCAGGAT
AGTC
M00939 E2F-1GACT
AGT
AGCT
ACG
CGCGG
CACTG
X2 PRODUCT M00652 Nrf-1 CAGCT
GATGCGCG
AM00743 c-Ets-1
GC
GCAGGAT
AGTC
X3 SUM M00632 GATA-4TA
ATGAA
TCTA
GTA
GAC
GAGT
AG
ACG
GA
M00711 ZtaCAT
GTAC
GCA
AGTC
AGCT
TACGTT
GGACA
TCATable 43: TRANSFAC MARS predictor for SkeletalMuscle.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 1.07 BG by default+ 0.00106 f(773.0 - X1) FG if X1 scores low- 0.000306 f(X1 - 773.0) BG if X1 scores high+ 0.00554 f(207.0 - X2) FG if X2 scores low+ 2.31 f(X2 - 207.0) FG if X2 scores high+ 0.0627 f(20.2 - X3) FG if X3 scores low+ 0.11 f(X3 - 20.2) FG if X3 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00410 SOX-9
GCAT
CTGA
CGTA
CTAG
CGTA
GCTACAAA
TCTAG
TCAG
CTAG
CGTA
M00773 MYBCTGA
ATCG
CAGT
ACTG
ATCG
AGTC
TGCAGTG
TTCAG
M00972 IRFCTAG
TGAAAT
ACG
CGAT
A
GGAC
TA
CTAT
ACG
Table 44: TRANSFAC MARS predictor for SkeletalMuscle.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.301 FG by default- 0.000521 f(X1 - 268.0) BG if X1 scores high
Module Feature MotifName Factor LogoX1 SUM Novel1 None A
TTGGT
CCCTCAGC
GCNovel2 None GG
TCT
CG
TCCA
CTAGG
X2 PRODUCT Novel3 NoneGTTG
TGTAAC
AGA
GTA
CTA
Novel4 MEF-2 AAGA
CTATAAC
GTable 45: DME+TRANSFAC MARS predictor for Testis.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.806 FG by default- 0.0282(31.1 - X1) BG if X1 scores low- 0.00308(X2 + 59.2) BG if X2 scores high
Module Feature MotifName Factor LogoX1 SUM Novel1 None GT
GC
GCGCT
GCGCG
CCG
Novel2 None TCCGCCGTC
TG
X2 SUM Novel3 None ATGAC
AGCA
ATCAT
CTA
Novel4 NoneGAC
GATGAT
CAAA
CCAC
X3 PRODUCT Novel5 None TG
AG
TG
CGGA
GTAGA
GGNovel6 None AT
AC
ACGTCAT
CAGA
TA
Table 46: DME+TRANSFAC MARS predictor for Testis.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.0166 FG by default- 0.0691(0.623 - X1) BG if X1 scores low- 0.0347(X1 - 0.623) BG if X1 scores high+ 0.0421(10.2 - X2) FG if X2 scores low+ 0.0402(X2 - 10.2) FG if X2 scores high+ 0.00328(13.1 - X3) FG if X3 scores low+ 0.00356(X3 - 13.1) FG if X3 scores high
Module Feature MotifName Factor LogoX1 SUM M00101 CdxA
CGTA
GAT
AT
GAT
CA
AGCT
TGA
M00133 Tst-1ACTG
CTAG
CTG
ACG
TAT
ATAT
CTA
ACG
CGA
ACG
CGT
AGT
ATCG
M00350 GATA-3TCGA
TCAG
GCTAGATG
TCA
CTA
ACTG
CGTA
X2 PRODUCT M00938 E2F-1AGT
CGT
ACG
ACGCGG
CTCG
CGA
TCGA
CGTA
GTAC
TACG
CG
TACG
GAC
M00983 MAFACGT
TACG
GATC
AGT
ATCG
GTA
ATG
ACGT
TGCAC
AGT
X3 PRODUCT M00319 MEF-3 TG
CGC
GTCAGGCTTA
TTC
CGTA
M00807 EGRCTG
ACT
AGGA
GACGGT
GC
TAG
TAG
AGC
Table 47: TRANSFAC MARS predictor for Thymus.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.194 FG by default- 0.0965 f(X1 - 21.2) BG if X1 scores high+ 0.0111 f(X2 - 82.8) FG if X2 scores high+ 0.00082 f(X3 - 32.5) f(X1 - 21.2) FG if X3 scores high and X1 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00791 HNF-3
GTCA
GCAT
TCGA
CGTA
CGA
GATC
CAC
ATA
GATC
CGTAC
ATG
CGAT
M00918 E2FAGCT
AGT
AGCTC
GCGCGG
CATCG
X2 PRODUCT M00054 NF-κB GGA
GGA
GTCA
CGAT
ACGT
ACT
TAC
TC
M00349 GATA-2GTCA
ACG
CTAGATC
AGTA
ACTGA
M00707 TFIIACTC
ATTAG
CAT
GAAC
GCGG
AACG
GC
X3 SUM M00025 Elk-1AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00332 WhnCGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT
Table 48: TRANSFAC MARS predictor for Thymus.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.0622 BG by default- 0.00867 f(116.0 - X1) BG if X1 scores low+ 0.000613 f(854.0 - X2) FG if X2 scores low+ 0.0426 f(X3 - 11.6) FG if X3 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00539 Arnt
TAGC
TGCA
CTGA
GTCA
CATG
TCAG
AGTCACGTGT
CA
AGTC
GATC
ACGT
GACT
ACGT
ATCG
M00652 Nrf-1 CAGCT
GATGCGCG
AX2 PRODUCT M00084 MZF1
CATG
CATG
CTAG
ACGT
TG
GA
ATG
TG
ACG
ATG
TACG
GTA
TGCA
M00126 GATA-1ACTG
GCAT
TGCA
CAGT
GCTAGATAT
CAG
CATG
TCAG
ACTG
CGAT
M00928 E2AGCT
ACTG
GACTAA
CCTAG
ACGT
CGT
GAT
AGCT
AGTCGT
GTCGT
Table 49: TRANSFAC MARS predictor for Thyroid.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.409 BG by default+ 0.00474(X1 + 17.5) FG if X1 scores high+ 0.00111 f(581.0 - X2) FG if X2 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00695 ETF
TGA
GC
TGGA
CCGG
M00803 E2FCG
CGCGG
CACTG
X2 SUM M00045 E4BP4GTAC
CAG
ATG
TACT
AGTAAG
TC
CTAG
M00079 Evi-1CGTA
TGAC
TAAGACT
CAG
AM00639 HNF-6
CTA
CGTA
GTAAG
ATCCAATT
CGA
CGTA
Table 50: TRANSFAC MARS predictor for Thyroid.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.27 BG by default+ 0.00937 f(110.0 - X1) FG if X1 scores low- 0.00177 f(20.6 - X2) f(110.0 - X1) BG if X2 scores low and X1 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00159 C/EBP
CGAT
TCAG
GAT
AGT
AGTGA
TCG
CGAT
CGTA
TA
TCAG
ACGT
AGCT
M00238 BarbieBoxGCTA
CAGT
GTAC
CGTAAAAGA
TGC
GCAT
ACTG
CTAG
CGTA
ATG
CTAG
M00641 HSF TTCGTC
CAGC
GA
AGGC
TTTCX2 SUM M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC
M00146 HSF1CTGAG
C
GTA
C
GTA
AGCT
CTAG
CAGT
CAGTCA
CTG
M00652 Nrf-1 CAGCT
GATGCGCG
AX3 PRODUCT M00155 ARP-1
CT
CG
CAA
GGTC
TCT
CACTTGG
AGAC
AC
TC
GTC
AT
M00801 CREBAGTC
C
T
A
GC
TCC
T
AACGT
Table 51: TRANSFAC MARS predictor for Trachea.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.425 FG by default- 0.000068 f(1390.0 - X1) f(X2 - 18.3) BG if X1 scores low and X2 scores high- 0.000274 f(X1 - 1390.0) f(X2 - 18.3) BG if X1 scores high and X2 scores high- 0.00727 f(X3 - 65.5) BG if X3 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00187 USF
ATCG
ACTCACA
TG
ACGT
CTG
CATG
GTC
M00500 STAT6TACG
TGCA
GATCTA
TCATC
GACT
M00720 CAC-bindAGG
ATGGC
GATGGC
GX2 SUM M00126 GATA-1
ACTG
GCAT
TGCA
CAGT
GCTAGATAT
CAG
CATG
TCAG
ACTG
CGAT
M00444 VDRAGA
GTGG
TTACG
CGTA
CAG
ACTG
CTAG
TAG
AGT
GCGAT
TCG
CGTA
X3 SUM M00136 Oct-1TCGA
CGAT
ACTG
TGCA
CGTA
C
ATAC
TC
TG
T
CCTGA
GCAT
CAGT
GACT
GCTA
M00162 Oct-1AGC
GTA
CGAT
CTA
CTATG
TGTA
AGCATT
AG
CT
CGAT
M00334 DTypeLTRGACCATTAAAT
CTable 52: TRANSFAC MARS predictor for Trachea.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.304 FG by default- 0.00171 f(721.0 - X1) BG if X1 scores low- 0.0608 f(X2 - 15.9) BG if X2 scores high- 0.119 f(X3 - 29.7) BG if X3 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00651 NF-muE1
GCC
GGCCATTC
GT
M00652 Nrf-1 CAGCT
GATGCGCG
AM00918 E2F
AGCT
AGT
AGCTC
GCGCGG
CATCG
Table 53: TRANSFAC MARS predictor for TrigeminalGanglion.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation- 0.262 BG by default+ 0.00246 f(480.0 - X1) FG if X1 scores low
Module Feature MotifName Factor LogoX1 SUM M00082 Evi-1
GTA
AG
CAC
TTA
GTA
AG
TA
AT
TA
CTGA
M00764 HNF-4AGT
CG
TGA
GTAC
ACC
TACT
AT
AGC
GTA
TGC
TC
GATC
X2 PRODUCT M00432 TTF1TA
AGC
AT
GCAAGA
CT
TAG
GT
M00764 HNF-4AGT
CG
TGA
GTAC
ACC
TACT
AT
AGC
GTA
TGC
TC
GATC
X3 SUM M00327 Pax-3CGTA
GTCA
TGCA
CGAT
CGAT
ACGT
AGTC
CATG
CAT
A
T
GC
G
CTA
A
TC
TG
A
TCG
CAT
G
ACT
CTAG
GCTA
CTAG
CATG
CGAT
M00694 E4F1 CG
ACT
CT
TACGTCAT
CTable 54: TRANSFAC MARS predictor for TrigeminalGanglion.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.0636 FG by default- 0.121 f(X1 - 21.0) BG if X1 scores high+ 0.00838 f(X2 - 66.3) FG if X2 scores high- 0.423 f(11.5 - X3) BG if X3 scores low- 0.0441 f(X3 - 11.5) BG if X3 scores high
Module Feature MotifName Factor LogoX1 PRODUCT M00478 Cdc5
CG
CGTA
AGT
AGT
ATAC
TA
ATC
TGA
ACT
CGA
GTA
M00690 AP-3ACTCC
TGCA
CAAG
CT
CAT
M00978 LEF1TCF1TGAC
GC
ACTTTA
GTA
AT
ACG
GACT
AGCT
Table 55: TRANSFAC MARS predictor for Uterus.Hs
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.308 FG by default- 0.000561 f(1290.0 - X1) BG if X1 scores low
Module Feature MotifName Factor LogoX1 PRODUCT M00803 E2F
CG
CGCGG
CACTG
M00915 AP-2TGC
TACG
ATCG
ATGC
GTC
GTAC
ATGC
ATGC
TCGA
CGC
GGCA
TGC
M01009 HES1CTGA
TCGA
ACG
TCG
ACG
TGTCGTGT
CG
ATGC
AGCT
GTAC
CTAG
X2 PRODUCT M00203 GATA-XGTAGAC
TATCGA
CTAG
CATG
TGAC
GTAC
GCAT
M00672 TEFTATA
GCGT
AT
CAT
TA
ACT
GA
CTAA
X3 MAX M00979 PAX6GAC
AGTGG
TA
GC
AGC
CTT
GTG
CGTA
GA
ATGC
ACGT
GTAC
Table 56: TRANSFAC MARS predictor for Uterus.Mm
MARS function terms (f(x) = max(x, 0)):
Term Interpretation+ 0.431 FG by default- 0.000852 f(852.0 - X1) BG if X1 scores low- 0.0082 f(X2 - 64.9) BG if X2 scores high- 0.00638 f(64.9 - X2) f(8.08 - X3) BG if X2 scores low and X3 scores low