robots are team members, too!
DESCRIPTION
The Genome Sequencing Operations group at the Broad Institute rely on JIRA to manage laboratory operations and instilled a high level of collaboration and communication between lab techs, project managers, and even robots! Learn how these robots use REST APIs to become active collaborators in a number of JIRA projects, and how you can integrate your own external applications to automate your interactions with JIRA in exciting and useful ways.TRANSCRIPT
Friday, June 15, 12
100000s samples10000s QC data points1000s of knowledge documents1000s small equipment pieces1000s sequencing runs100s of technology development projects100s instruments (sequencing & robots)100s of experiments100s of people (resource mgmt)10s of beta tests from vendors
We track lots of things:
Friday, June 15, 12
100000s samples10000s QC data points1000s of knowledge documents1000s small equipment pieces1000s sequencing runs100s of technology development projects100s instruments (sequencing & robots)100s of experiments100s of people (resource mgmt)10s of beta tests from vendors
We track lots of things:
Friday, June 15, 12
100000s samples10000s QC data points1000s of knowledge documents1000s small equipment pieces1000s sequencing runs100s of technology development projects100s instruments (sequencing & robots)100s of experiments100s of people (resource mgmt)10s of beta tests from vendors
$$$$We track lots of things:
Friday, June 15, 12
100000s samples10000s QC data points1000s of knowledge documents1000s small equipment pieces1000s sequencing runs100s of technology development projects100s instruments (sequencing & robots)100s of experiments100s of people (resource mgmt)10s of beta tests from vendors
or
$$$$We track lots of things:
Friday, June 15, 12
Friday, June 15, 12
The Broad Institute of MIT and HarvardGenome Sequencing Platform
Jim Meldrim and John Stalker
Robotsare Team Members Too!
Friday, June 15, 12
Established 2004 - Eli and Edythe Broad
Joint CollaborationMITHarvard UniversityAffiliated HospitalsBeth Israel Deaconess Medical Center
Brigham and Women’s Hospital
Children’s Hospital
Dana-Farber Cancer Institute
Massachusetts General Hospital
The Broad Institute
Friday, June 15, 12
Programs (Science)Chemical BiologyMedical and Population GeneticsCell CircuitsEpigenomicsGenome Sequencing and AnalysisCancerInfectious DiseasesMetabolismPsychiatric Disease
OrganizationPlatforms (Technology)
Genome SequencingBiological SamplesChemical BiologyGenetic AnalysisImagingMetabolite ProfilingProteomicsRNAiTherapeutics Discovery and Development
Friday, June 15, 12
Programs (Science)Chemical BiologyMedical and Population GeneticsCell CircuitsEpigenomicsGenome Sequencing and AnalysisCancerInfectious DiseasesMetabolismPsychiatric Disease
OrganizationPlatforms (Technology)
Genome SequencingBiological SamplesChemical BiologyGenetic AnalysisImagingMetabolite ProfilingProteomicsRNAiTherapeutics Discovery and Development
Friday, June 15, 12
Genome Sequencing Background
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Cost of Sequencing a Mammalian Genome over time and compared to Moore's LawGenome sequencing cost data courtesy: Wetterstrand KA. DNA Sequencing Costs: Data f rom the NHGRI Large-Scale Genome Sequencing Program Available at: www.genome.gov/sequencingcosts. Accessed5/9/2012
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of S
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Cost of Sequencing a Mammalian Genome over time and compared to Moore's LawGenome sequencing cost data courtesy: Wetterstrand KA. DNA Sequencing Costs: Data f rom the NHGRI Large-Scale Genome Sequencing Program Available at: www.genome.gov/sequencingcosts. Accessed5/9/2012
1st Human Genome2001$3 billion
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20.. 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011
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$10
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$10,000
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t per Gen
ome
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20K
30K
40K
50K
60K
70K
80K
Run
ning
Sum
of S
amples
(cop
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Cost of Sequencing a Mammalian Genome over time and compared to Moore's LawGenome sequencing cost data courtesy: Wetterstrand KA. DNA Sequencing Costs: Data f rom the NHGRI Large-Scale Genome Sequencing Program Available at: www.genome.gov/sequencingcosts. Accessed5/9/2012
1st Human Genome2001$3 billion
AutomatedSequencing ABI3730 / Tphi
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20.. 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011
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t per Gen
ome
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30K
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50K
60K
70K
80K
Run
ning
Sum
of S
amples
(cop
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Cost of Sequencing a Mammalian Genome over time and compared to Moore's LawGenome sequencing cost data courtesy: Wetterstrand KA. DNA Sequencing Costs: Data f rom the NHGRI Large-Scale Genome Sequencing Program Available at: www.genome.gov/sequencingcosts. Accessed5/9/2012
1st Human Genome2001$3 billion
AutomatedSequencing ABI3730 / Tphi
Next GenSequencing Illumina GA
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20.. 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011
Dec
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Februa
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$1
$10
$100
$1,000
$10,000
$100,000
$1,000,000
$10,000,000
$100,000,000
Cos
t per Gen
ome
0K
10K
20K
30K
40K
50K
60K
70K
80K
Run
ning
Sum
of S
amples
(cop
y)
Cost of Sequencing a Mammalian Genome over time and compared to Moore's LawGenome sequencing cost data courtesy: Wetterstrand KA. DNA Sequencing Costs: Data f rom the NHGRI Large-Scale Genome Sequencing Program Available at: www.genome.gov/sequencingcosts. Accessed5/9/2012
1st Human Genome2001$3 billion
AutomatedSequencing ABI3730 / Tphi
Next GenSequencing Illumina GA
Current SofA Illumina HiSeq
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20.. 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011
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$1
$10
$100
$1,000
$10,000
$100,000
$1,000,000
$10,000,000
$100,000,000
Cos
t per Gen
ome
0K
10K
20K
30K
40K
50K
60K
70K
80K
Run
ning
Sum
of S
amples
(cop
y)
Cost of Sequencing a Mammalian Genome over time and compared to Moore's LawGenome sequencing cost data courtesy: Wetterstrand KA. DNA Sequencing Costs: Data f rom the NHGRI Large-Scale Genome Sequencing Program Available at: www.genome.gov/sequencingcosts. Accessed5/9/2012
Friday, June 15, 12
20.. 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011
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Februa
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$1
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$10,000
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$1,000,000
$10,000,000
$100,000,000
Cos
t per Gen
ome
0K
10K
20K
30K
40K
50K
60K
70K
80K
Cum
ulative Num
ber o
f Sam
ples
Cost of Sequencing a Mammalian Genome over time and compared to Moore's LawGenome sequencing cost data courtesy: Wetterstrand KA. DNA Sequencing Costs: Data f rom the NHGRI Large-Scale Genome Sequencing Program Available at: www.genome.gov/sequencingcosts. Accessed5/9/2012
Friday, June 15, 12
20.. 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011
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$1
$10
$100
$1,000
$10,000
$100,000
$1,000,000
$10,000,000
$100,000,000
Cos
t per Gen
ome
0K
10K
20K
30K
40K
50K
60K
70K
80K
Cum
ulative Num
ber o
f Sam
ples
Cost of Sequencing a Mammalian Genome over time and compared to Moore's LawGenome sequencing cost data courtesy: Wetterstrand KA. DNA Sequencing Costs: Data f rom the NHGRI Large-Scale Genome Sequencing Program Available at: www.genome.gov/sequencingcosts. Accessed5/9/2012
LCSET-11st JIRA tracked libraries
5/17/2010
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Genome Sequencing101
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Genome Sequencing 101
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Cell
Nucleus
Genome Sequencing 101
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Genome Sequencing 101
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Genome Sequencing 101
1 2 3 4 5
6 7 8 9 10 11 12
13 14 15 16 17 18
19 20 21 22
X YFriday, June 15, 12
Genome Sequencing 101
1 2 3 4 5
6 7 8 9 10 11 12
13 14 15 16 17 18
19 20 21 22
X Y
Mom
Pop
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Genome Sequencing 101
X Y
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Genome Sequencing 101
JIRA is in our DNA!Friday, June 15, 12
Genome Sequencing 101
Friday, June 15, 12
Genome Sequencing 101
DNA (Deoxyribonucleic acid)
• Two intertwined molecules - Double Helix
Friday, June 15, 12
Genome Sequencing 101
DNA (Deoxyribonucleic acid)
• Two intertwined molecules - Double Helix
• Described in 1953 by James Watson and Francis Crick
Friday, June 15, 12
Genome Sequencing 101
DNA (Deoxyribonucleic acid)
• Two intertwined molecules - Double Helix
• Described in 1953 by James Watson and Francis Crick
• Carries the genetic code - the instructions for life
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Cytosine
Adenine Thymine
Guanine
Genome Sequencing 101
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Genome Sequencing 101
Friday, June 15, 12
Genome Sequencing 101
TGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGT
Friday, June 15, 12
Genome Sequencing 101TGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGT
3 Billion Bases Long!
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Genome Sequencing 101TGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGT
Friday, June 15, 12
Genome Sequencing 101TGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGT
Normal
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Genome Sequencing 101TGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGTGGTACACAGTACGTACTCTGTGACGT
Normal
TGCAGCAATGCTGAGCGCTAGCGAGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGAGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGAGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGAGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGAGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGAGGTACACAGTACGTACTCTGTGACGTTGCAGCAATGCTGAGCGCTAGCGAGGTACACAGTACGTACTCTGTGACGT
Tumor
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Lab Process Trackingwith
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Outside the Genome Sequencing Platform
Our Process“The Players”
?
Scientist
Friday, June 15, 12
Outside the Genome Sequencing Platform
Our Process“The Players”
?
Scientist
Friday, June 15, 12
Outside the Genome Sequencing Platform
Our Process“The Players”
?
Scientist
Cancer HIV E. Coli Ice Core
Friday, June 15, 12
Outside the Genome Sequencing Platform
Our Process“The Players”
?
Scientist
Friday, June 15, 12
Our Process“The Players”
?
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
?
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
?
Outside the Genome Sequencing Platform
Scientist
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Our Process“The Players”
Projects Group
?Project
Manager
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
Projects Group
?Project
Manager
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
Projects Group
?Project
Manager
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Coordinator
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Coordinator
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Coordinator
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Coordinator
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Coordinator
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Outside the Genome Sequencing Platform
Scientist
Technician
Coordinator
Friday, June 15, 12
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Outside the Genome Sequencing Platform
Scientist
Technician
Coordinator
Friday, June 15, 12
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Coordinator
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Shearing
Coordinator
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Shearing
Coordinator
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Shearing
Coordinator
LC
Outside the Genome Sequencing Platform
Scientist
Friday, June 15, 12
Scientist
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Shearing
Coordinator
LC
Outside the Genome Sequencing Platform
Friday, June 15, 12
Scientist
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Shearing
Coordinator
LC Pooling
Outside the Genome Sequencing Platform
Friday, June 15, 12
Scientist
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Shearing
Coordinator
LC Pooling
Outside the Genome Sequencing Platform
Friday, June 15, 12
Scientist
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Shearing
Coordinator
LC Pooling Sequencing
Outside the Genome Sequencing Platform
Friday, June 15, 12
Scientist
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Shearing
Coordinator
LC Pooling Sequencing
Outside the Genome Sequencing Platform
Friday, June 15, 12
Scientist
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Shearing
Coordinator
LC Pooling Sequencing
Data!
Outside the Genome Sequencing Platform
Friday, June 15, 12
Scientist
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Shearing
Coordinator
LC Pooling Sequencing
Data!
Analyst
Outside the Genome Sequencing Platform
Friday, June 15, 12
Scientist
Our Process“The Players”
Projects Group
Lab Operations
?Project
Manager
Technician
Shearing
Coordinator
LC Pooling Sequencing
Data!
Analyst
Outside the Genome Sequencing Platform
Friday, June 15, 12
Our ProcessShearing
LC
Pooling
Sequencing
“The Workflow”
Friday, June 15, 12
Our Process“The Workflow”
Shearing
LC
Pooling
Sequencing
Friday, June 15, 12
Our Process“The Workflow”
Shearing
LC
Pooling
Sequencing
Friday, June 15, 12
Our Process“The Workflow”
Shearing
LC
Pooling
Sequencing
Friday, June 15, 12
Our Process“The Workflow”
Shearing
LC
Pooling
Sequencing
Friday, June 15, 12
Our ProcessCustom Fields
Shearing
LC
Pooling
Sequencing
Friday, June 15, 12
Our ProcessCustom Fields
Shearing
LC
Pooling
Sequencing
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Friday, June 15, 12
#summit12
You can take any business process, even something
thats far removed from ‘typical’ (like genome
sequencing) and boil it down to a workflow.
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Shearing
LC
Pooling
Sequencing
Friday, June 15, 12
Shearing
LC
Pooling
Sequencing
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
“Flowcell Tracking”
CREATE
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
“Flowcell Tracking”
CREATE
Friday, June 15, 12
Sequencing
Strip Tube Setup Flowcell Setup Sequencing
REST
“Crazy Robots”
“Flowcell Tracking”
CREATE TRANSITION & UPDATE
Friday, June 15, 12
#summit12
Integrate and automate your business processes with
JIRA using RESTful web services.
Friday, June 15, 12
“Flowcell Tracking”
Friday, June 15, 12
“Flowcell Tracking”
Friday, June 15, 12
“Flowcell Tracking”
Friday, June 15, 12
“Flowcell Tracking”
Friday, June 15, 12
“Flowcell Tracking”
Friday, June 15, 12
“Flowcell Tracking”
Friday, June 15, 12
“Flowcell Tracking”
Friday, June 15, 12
“Flowcell Tracking”
6wk Ave Week Filter49
Cluster AmpResult Total Lanes
% of Lanes (CA)
Lanes Reimb. (CA)
%Reimburseable
(CA)
Pass
Cluster Amp Fail
Grand Total 12100%487
7.02%1235%171
0.00%065%316
Amp Fails for FC's Created: 11/27/2011 - 12/3/2011
Week 16 Week 17 Week 18 Week 19 Week 20
0
50
100
150
Value 62
52
8
34
2
131
76
32
54
18
Amp Fail History 6 weeks
Measure NamesTotal Lanes
Cluster Amp Fails
Sequencing Result Total Lanes
% of Lanes (SEQ)
Lanes Reimb. (SEQ)
%Reimburseable
(SEQ) NEW
Pass
Sequencer Fail
Grand Total 10100%327
100%103%10
0%097%317
Seq Fails for FC's Started: 11/27/2011 - 12/3/2011
Week 16 Week 17 Week 18 Week 19 Week 20
0
50
100
150
Value
016 16 16
0
129
6248 46
10
Seq Fail History 6 weeks
51%
16%
1 Too sparse
2 Too sparse
3 Too sparse
4 None
5 Too sparse
6 Too sparse
7 Too sparse
8 None
C096UACXX
Fail Category Reworked? Designation Comments FLOWCELL JIRA Issue Fail Mode # of Lanes FailedCA N FAST TRACK: Library QC D0EN9ACXX FCT-2715 ICs only
LCSet 849 & 866 C096DACXX FCT-2706 Too dense
LCSet 913 1000G WGS Phase 2 D0EAUACXX FCT-2719 Too sparse
LCSET 913 1000G WGS Phase 2 D0ECRACXX FCT-2722 Too sparse
LCSETs 866 & 850 C096WACXX FCT-2711 Too dense
Y Check volume of Normalized to make sure there is enough left LCSE.. C095FACXX FCT-2704 ICs only
LCSET 863 (mouse prostate WEx) and LCSET 805 (Ciliopathies WE.. C096UACXX FCT-2717 Too sparse
LCSET-814: Lung CIP and Melanoma CIP WGS C09A7ACXX FCT-2735 No Amp
TLC: Prokaryotic RNA, dUTP Tetrahymena, WNV & HIV Nugen, 180.. D0EL9ACXX FCT-2709 Too sparse
SEQ N LCSETs 807 & 810 D0ED1ACXX FCT-2718 Images Out Of Focus
Y (TLC) CLL RNA-Seq dUTP cDNA D0EVTACXX FCT-2730 Images Out Of Focus
1
2
8
8
1
8
6
4
6
1
8
Flowcell Fail List for FC's Created or Started: Null - Null
Flowcell Fail Report
Friday, June 15, 12
Dev JIRAElectronic Lab Notebook
&Project Management
Friday, June 15, 12
Collaborator
Outside the GSP
Our ProcessInnovating
Projects Group
Lab Operations
ProjectManager
Technician
Shearing
Coordinator
LC Pooling Sequencing
Friday, June 15, 12
Collaborator
Outside the GSP
The ProblemProjects Group
Lab Operations
ProjectManager
Technician
Shearing
Coordinator
LC Pooling Sequencing
Friday, June 15, 12
Electronic notebooks:A new leaf7 January 2005 - Jim Giles
experimental protocols are continually changing....
redesigning the pages of e-note-books, and adding
fields and tables, usually entails modifying the
structure of the underlying database.
nature
Friday, June 15, 12
Going paperless:The digital lab25 January 2012 - Jim Giles
The greatest challenge... is not to create a
tool that can do everything, but one that... is fundamentally easy to use.
nature
Friday, June 15, 12
Collaborator
Outside the GSP
The ProblemProjects Group
Lab Operations
ProjectManager
Technician
Shearing
Coordinator
LC Pooling Sequencing
Friday, June 15, 12
Outside the GSP
The ProblemProjects Group
Lab Operations
Technician
Shearing
Coordinator
LC Pooling Sequencing
Friday, June 15, 12
Outside the GSP
The ProblemProjects Group
Lab Operations
Technician
Shearing
Coordinator
LC Pooling Sequencing
Friday, June 15, 12
The Solution
Friday, June 15, 12
Outside the GSP
The ProblemProjects Group
Lab Operations
Technician
Shearing
Coordinator
LC Pooling Sequencing
Friday, June 15, 12
InnovationDEV JIRA
Shearing
Friday, June 15, 12
InnovationDEV JIRA
Shearing
!
Friday, June 15, 12
InnovationDEV JIRA
Shearing
We need a better “Shearing” protocol
Friday, June 15, 12
InnovationDEV JIRA
Shearing
We need a better “Shearing” protocol
Story
Friday, June 15, 12
InnovationDEV JIRA
Shearing
Story
Issue Types
Experiment
Friday, June 15, 12
InnovationDEV JIRA
Shearing
Story
Issue Types
Experiment
Idea
Friday, June 15, 12
InnovationDEV JIRA
Shearing
Story
Issue Types
Experiment
Idea
Experiment
Friday, June 15, 12
InnovationDEV JIRA
Shearing
Story
Issue Types
Experiment
Idea
Experiment
Friday, June 15, 12
InnovationDEV JIRA
Shearing
Story
Issue Types
Experiment
Idea
Experiment
We need to get new BOM to Materials Group
Friday, June 15, 12
InnovationDEV JIRA
Shearing
Story
Issue Types
Experiment
Idea
Experiment
Task
Friday, June 15, 12
InnovationDEV JIRA
Shearing
Story
Issue Types
Experiment
Idea
Experiment
Task
Friday, June 15, 12
InnovationDEV JIRA
Story
Issue Types
Experiment
Idea
Task
Experiment
Friday, June 15, 12
InnovationDEV JIRA
Story
Issue Types
Experiment
Idea
Task
Custom Link Type
Is Parent of
Is Child of
Experiment
Friday, June 15, 12
InnovationDEV JIRA
Story
Issue Types
Experiment
Idea
Experiment
Task
Custom Link Type
Is Parent of
Is Child of
Friday, June 15, 12
InnovationDEV JIRA
Story
Issue Types
Experiment
Idea
Experiment
Task
Custom Link Type
Is Parent of
Is Child of
structure.almworks.commarketplace.atlassian.com/34717
Structures
Friday, June 15, 12
Innovation DEV JIRAStory - Umbrella issue equivalent to a “project”
Issue Types
Experiment - Question aimed at improving a process
Idea - Seed for a Story or Experiment
Task - Something that needs to be done
Friday, June 15, 12
Innovation DEV JIRAStory - Umbrella issue equivalent to a “project”
Issue Types
Experiment - Question aimed at improving a process
Idea - Seed for a Story or Experiment
Task - Something that needs to be done
Document - Reference material, scientific article etc
Friday, June 15, 12
Innovation DEV JIRAStory - Umbrella issue equivalent to a “project”
Issue Types
Experiment - Question aimed at improving a process
Idea - Seed for a Story or Experiment
Task - Something that needs to be done
Document - Reference material, scientific article etc
Process Change - Note that something changed on a certain date
Friday, June 15, 12
Innovation DEV JIRAStory - Umbrella issue equivalent to a “project”
Issue Types
Experiment - Question aimed at improving a process
Idea - Seed for a Story or Experiment
Task - Something that needs to be done
Document - Reference material, scientific article etc
Process Change - Note that something changed on a certain date
Troubleshooting - Group effort to diagnose a problem
Friday, June 15, 12
Innovation DEV JIRAStory - Umbrella issue equivalent to a “project”
Issue Types
Experiment - Question aimed at improving a process
Idea - Seed for a Story or Experiment
Task - Something that needs to be done
Document - Reference material, scientific article etc
Process Change - Note that something changed on a certain date
Troubleshooting - Group effort to diagnose a problem
HotPot Topic - Agenda item for group weekly meeting
Friday, June 15, 12
WorkflowExperiment
Experiment - Question aimed at improving a process
Hypothesis
Observe
Analyze
Report
Friday, June 15, 12
ExperimentHypothesis
Observe
Analyze
Report
Friday, June 15, 12
ExperimentHypothesis
Observe
Analyze
Reportwww.valiantys.com
marketplace.atlassian.com/1076698
Exocet
Friday, June 15, 12
Custom FieldsExperiment
Hypothesis
Observe
Analyze
Report
Custom Fields
Summary - A question that needs answering
Hypothesis - More formal phrasing of that question
Experimental Design - How did you do it
Materials and Methods - What did you use
Results - What did you learn
Conclusions - What are the next steps
Friday, June 15, 12
Grouping ThingsVersions
Illumina v1.0
Ion v3.0
Friday, June 15, 12
Grouping ThingsVersions
Illumina v2.0
Ion v3.0
Friday, June 15, 12
Grouping ThingsVersions
Illumina v3.0
Ion v3.0
Friday, June 15, 12
Grouping ThingsComponents
Illumina
Ion
Shearing
Shearing
Components = Functional Areas
Pooling
Pooling
Friday, June 15, 12
Grouping ThingsComponents
Illumina
Ion
Shearing
Shearing
Pooling
Pooling
Automation
Friday, June 15, 12
Grouping ThingsComponents
Illumina
Ion
Shearing
Shearing
Pooling
Pooling
Materials
Friday, June 15, 12
Friday, June 15, 12
Friday, June 15, 12
Friday, June 15, 12
#summit12
JIRA is flexible enough to mirror our particular style
of Project Management.
Friday, June 15, 12
Oct 1, 10 Dec 1, 10 Feb 1, 11 Apr 1, 11 Jun 1, 11 Aug 1, 11 Oct 1, 11 Dec 1, 11 Feb 1, 12 Apr 1, 12 Jun 1, 12
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DEV JIRA Activity
DEV JIRA ActivityActivity
Friday, June 15, 12
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ActionDocument
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Friday, June 15, 12
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Friday, June 15, 12
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Cum
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weiand
voltaire
tfennell
tcasse
tamason
steelmansogoloff
skim
shoangsheflersfisher
sdookranscott
schauvin
schanner
rjohnson
rhegarty
rdazaptrang
nyima
nlennon
nicol
mcoyne
mcoole
mattlee
lisaz
lisatran
lisag
lholmes
leonmlaurena
lambiase
kompella
kelliher
kathleen
julozoa
jgrimsby
jfostel
jboch
jabreu
haon
grandboi
gottardi
ginav
fviloria
frerefrederiq
eupsall
eryan
emsalls
drobbins
dperrin
dionne
desmet
delorey
cwalsh
crwalls
costello
connollychrisf
celie
carsten
candido
bourzguibminie
biasellabhurhula
atzou
andrew
anavidi
alyssar
alvintam
alexallalecw
aholling
acheney
SDodge
QYuJStalker
DEV JIRA User Activity5/30/2012 1:52:32 PM
UserJStalker
QYu
SDodge
acheney
aholling
alecw
alexall
alvintam
alyssar
anavidi
andrew
atzou
barry
bhurhula
biasella
bminie
bourzgui
candido
carsten
celie
chrisf
connolly
costello
crwalls
cwalsh
delorey
desmet
dionne
dperrin
drobbins
ebevil
emsalls
eryan
eupsall
frederiq
frere
fviloria
ggiannou
ginav
gottardi
grandboi
haon
jabreu
jboch
jfostel
jgrimsby
Friday, June 15, 12
Oct 1, 10 Dec 1, 10 Feb 1, 11 Apr 1, 11 Jun 1, 11 Aug 1, 11 Oct 1, 11 Dec 1, 11 Feb 1, 12 Apr 1, 12 Jun 1, 12
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Cum
ulative Activity
weiand
voltaire
tfennell
tcasse
tamason
steelmansogoloff
skim
shoangsheflersfisher
sdookranscott
schauvin
schanner
rjohnson
rhegarty
rdazaptrang
nyima
nlennon
nicol
mcoyne
mcoole
mattlee
lisaz
lisatran
lisag
lholmes
leonmlaurena
lambiase
kompella
kelliher
kathleen
julozoa
jgrimsby
jfostel
jboch
jabreu
haon
grandboi
gottardi
ginav
fviloria
frerefrederiq
eupsall
eryan
emsalls
drobbins
dperrin
dionne
desmet
delorey
cwalsh
crwalls
costello
connollychrisf
celie
carsten
candido
bourzguibminie
biasellabhurhula
atzou
andrew
anavidi
alyssar
alvintam
alexallalecw
aholling
acheney
SDodge
QYuJStalker
DEV JIRA User Activity5/30/2012 1:57:30 PM
UserJStalker
QYu
SDodge
acheney
aholling
alecw
alexall
alvintam
alyssar
anavidi
andrew
atzou
barry
bhurhula
biasella
bminie
bourzgui
candido
carsten
celie
chrisf
connolly
costello
crwalls
cwalsh
delorey
desmet
dionne
dperrin
drobbins
ebevil
emsalls
eryan
eupsall
frederiq
frere
fviloria
ggiannou
ginav
gottardi
grandboi
haon
jabreu
jboch
jfostel
jgrimsby
Friday, June 15, 12
Oct 1, 11 Dec 1, 11 Feb 1, 12 Apr 1, 12 Jun 1, 12
weiand
voltaire
tfennell
tamason
steelmansogoloff
skim
shoangsheflersfisher
sdookranscott
schauvin
schanner
rjohnson
rhegarty
rdazaptrang
nyima nicol
mcoyne
mcoole
mattlee
lisaz
lisag
lholmes
leonmlaurena
kompella
kelliher
kathleen
julozoajboch
grandboi
gottardi
ginav
fviloria
frerefrederiq
emsalls
desmet
cwalsh
crwallscelie
carsten
candido
bourzguibminie
biasellabhurhula
atzou
andrew
alyssar
alvintam
alecw
acheney
SDodge
QYuJStalker
carsten
celie
chrisf
connolly
costello
crwalls
cwalsh
delorey
desmet
dionne
dperrin
drobbins
ebevil
emsalls
eryan
eupsall
frederiq
frere
fviloria
ggiannou
ginav
gottardi
grandboi
haon
jabreu
jboch
jfostel
jgrimsbyFriday, June 15, 12
Oct 1, 10 Dec 1, 10 Feb 1, 11 Apr 1, 11 Jun 1, 11 Aug 1, 11 Oct 1, 11 Dec 1, 11 Feb 1, 12 Apr 1, 12 Jun 1, 12
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Cum
ulative Activity
weiand
voltaire
tfennell
tcasse
tamason
steelmansogoloff
skim
shoangsheflersfisher
sdookranscott
schauvin
schanner
rjohnson
rhegarty
rdazaptrang
nyima
nlennon
nicol
mcoyne
mcoole
mattlee
lisaz
lisatran
lisag
lholmes
leonmlaurena
lambiase
kompella
kelliher
kathleen
julozoa
jgrimsby
jfostel
jboch
jabreu
haon
grandboi
gottardi
ginav
fviloria
frerefrederiq
eupsall
eryan
emsalls
drobbins
dperrin
dionne
desmet
delorey
cwalsh
crwalls
costello
connollychrisf
celie
carsten
candido
bourzguibminie
biasellabhurhula
atzou
andrew
anavidi
alyssar
alvintam
alexallalecw
aholling
acheney
SDodge
QYuJStalker
DEV JIRA User Activity5/30/2012 1:57:30 PM
UserJStalker
QYu
SDodge
acheney
aholling
alecw
alexall
alvintam
alyssar
anavidi
andrew
atzou
barry
bhurhula
biasella
bminie
bourzgui
candido
carsten
celie
chrisf
connolly
costello
crwalls
cwalsh
delorey
desmet
dionne
dperrin
drobbins
ebevil
emsalls
eryan
eupsall
frederiq
frere
fviloria
ggiannou
ginav
gottardi
grandboi
haon
jabreu
jboch
jfostel
jgrimsby
Friday, June 15, 12
Oct 1, 10 Dec 1, 10 Feb 1, 11 Apr 1, 11 Jun 1, 11 Aug 1, 11 Oct 1, 11 Dec 1, 11 Feb 1, 12 Apr 1, 12 Jun 1, 12
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Cum
ulative Activity
weiand
voltaire
tfennell
tcasse
tamason
steelmansogoloff
skim
shoangsheflersfisher
sdookranscott
schauvin
schanner
rjohnson
rhegarty
rdazaptrang
nyima
nlennon
nicol
mcoyne
mcoole
mattlee
lisaz
lisatran
lisag
lholmes
leonmlaurena
lambiase
kompella
kelliher
kathleen
julozoa
jgrimsby
jfostel
jboch
jabreu
haon
grandboi
gottardi
ginav
fviloria
frerefrederiq
eupsall
eryan
emsalls
drobbins
dperrin
dionne
desmet
delorey
cwalsh
crwalls
costello
connollychrisf
celie
carsten
candido
bourzguibminie
biasellabhurhula
atzou
andrew
anavidi
alyssar
alvintam
alexallalecw
aholling
acheney
SDodge
QYuJStalker
DEV JIRA User Activity5/30/2012 1:52:32 PM
UserJStalker
QYu
SDodge
acheney
aholling
alecw
alexall
alvintam
alyssar
anavidi
andrew
atzou
barry
bhurhula
biasella
bminie
bourzgui
candido
carsten
celie
chrisf
connolly
costello
crwalls
cwalsh
delorey
desmet
dionne
dperrin
drobbins
ebevil
emsalls
eryan
eupsall
frederiq
frere
fviloria
ggiannou
ginav
gottardi
grandboi
haon
jabreu
jboch
jfostel
jgrimsby
Friday, June 15, 12
Oct 1, 10 Dec 1, 10 Feb 1, 11 Apr 1, 11 Jun 1, 11 Aug 1, 11 Oct 1, 11 Dec 1, 11 Feb 1, 12 Apr 1, 12 Jun 1, 12
20
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240
Cum
ulative Activity
weiand
voltaire
tfennell
tcasse
tamason
steelmansogoloff
skim
shoangsheflersfisher
sdookranscott
schauvin
schanner
rjohnson
rhegarty
rdazaptrang
nyima
nlennon
nicol
mcoyne
mcoole
mattlee
lisaz
lisatran
lisag
lholmes
leonmlaurena
lambiase
kompella
kelliher
kathleen
julozoa
jgrimsby
jfostel
jboch
jabreu
haon
grandboi
gottardi
ginav
fviloria
frerefrederiq
eupsall
eryan
emsalls
drobbins
dperrin
dionne
desmet
cwalsh
crwalls
costello
connollychrisf
celie
carsten
candido
bourzguibminie
biasellabhurhula
atzou
andrew
anavidi
alyssar
alvintam
alexallalecw
aholling
acheney
SDodge
QYuJStalker
delorey
DEV JIRA User Activity5/30/2012 2:32:33 PM
UserJStalker
QYu
SDodge
acheney
aholling
alecw
alexall
alvintam
alyssar
anavidi
andrew
atzou
barry
bhurhula
biasella
bminie
bourzgui
candido
carsten
celie
chrisf
connolly
costello
crwalls
cwalsh
delorey
desmet
dionne
dperrin
drobbins
ebevil
emsalls
eryan
eupsall
frederiq
frere
fviloria
ggiannou
ginav
gottardi
grandboi
haon
jabreu
jboch
jfostel
jgrimsby
Friday, June 15, 12
Oct 1, 10 Dec 1, 10 Feb 1, 11 Apr 1, 11 Jun 1, 11 Aug 1, 11 Oct 1, 11 Dec 1, 11 Feb 1, 12 Apr 1, 12 Jun 1, 12
20
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Cum
ulative Activity
weiand
voltaire
tfennell
tcasse
tamason
steelmansogoloff
skim
shoangsheflersfisher
sdookranscott
schauvin
schanner
rjohnson
rhegarty
rdazaptrang
nyima
nlennon
nicol
mcoyne
mcoole
mattlee
lisaz
lisatran
lisag
lholmes
leonmlaurena
lambiase
kompella
kelliher
kathleen
julozoa
jgrimsby
jfostel
jboch
jabreu
haon
grandboi
gottardi
ginav
fviloria
frerefrederiq
eupsall
eryan
emsalls
drobbins
dperrin
dionne
desmet
delorey
cwalsh
crwalls
costello
connollychrisf
celie
carsten
candido
bourzguibminie
biasellabhurhula
atzou
andrew
anavidi
alyssar
alvintam
alexallalecw
aholling
acheney
SDodge
QYuJStalker
DEV JIRA User Activity5/30/2012 1:52:32 PM
UserJStalker
QYu
SDodge
acheney
aholling
alecw
alexall
alvintam
alyssar
anavidi
andrew
atzou
barry
bhurhula
biasella
bminie
bourzgui
candido
carsten
celie
chrisf
connolly
costello
crwalls
cwalsh
delorey
desmet
dionne
dperrin
drobbins
ebevil
emsalls
eryan
eupsall
frederiq
frere
fviloria
ggiannou
ginav
gottardi
grandboi
haon
jabreu
jboch
jfostel
jgrimsby
Friday, June 15, 12
#summit12
If you can describe a business process -- even genome
sequencing -- you can model it in JIRA.
Friday, June 15, 12
Thank you!
JIRA TeamAmy BiasellaJohn Walsh
Genomics PlatformSheila FisherNiall Lennon
All our Users!
Friday, June 15, 12