rethinking substantial equivalence

1
CORRESPONDENCE http://biotech.nature.com FEBRUARY 2002 VOLUME 20 nature biotechnology tide. Our results broaden the hypothesis of Mourez et al. that the YWWL sequence may bind to the PA heptamer at the hydrophobic area that interacts with the EF/LF factors (Fig. 1B,C), and identify the crucial site. Using the technology devised for a much- publicized distributed-computing screen- saver project 4 , which now uses more than 1 million computers, we plan to initiate a massively distributed search among a virtual library of 3.5 billion small molecules for compounds that can bind to the PA heptamer–binding site identified by our algorithm 2 . Our approach may suggest new molecules that can prevent the assembly of the anthrax toxin complex. Meir Glick, Guy H. Grant, and W. Graham Richards, Department of Chemistry, Central Chemistry Laboratory, University of Oxford, South Parks Road, Oxford, OX1 3QH, UK ([email protected]) 1. Pannifer, A.D. et al. Nature 414, 229–233 (2001). 2. Glick, M., Robinson, D.D., Grant, G.H., & Richards W.G. J. Am. Chem. Soc., in press (2002). 3. Petosa, C. et al. Nature 385, 833–838 (1997). 4. http://www.chem.ox.ac.uk the EU, so as to provide input to a workshop organized by BEUC in September 2001 2 . To that end, we analyzed several notifica- tion dossiers for products derived from GM varieties of maize and refined oil derived from GM varieties of oilseed rape. Our analysis showed that compositional data submitted on the content of macro- and micronutrients, vitamins, inherent plant toxins, and anti-nutrients lacked consisten- cy from case to case. Furthermore, the design of the GM crop field trial, the geo- graphical locations and seasons of planting and harvesting, and the choice of control differed considerably from case to case. These case studies illustrated the lack of an operational definition of the concept of substantial equivalence in the EU. As an alternative model, we have pro- posed that an operational definition for food-safety assessment should include a minimum list of macro- and micronutri- ents, anti-nutrients, inherent plant toxins, secondary metabolites, and allergens to be analyzed for each GM crop species and of their baseline concentrations in conven- tional varieties. It is also necessary to cre- ate detailed protocols to guide the design of field trials, to establish validated tech- niques that can reliably ascertain the con- tent of these compounds in plants, and to use common methods to analyze the data statistically. The participants at the BEUC workshop concluded that “substantial equivalence” has been a controversial and misleading term for consumers that should not be used in regulatory decision-making. They recog- nized that it remains crucial to systematical- ly detect unintended changes in the compo- sition of GM crops compared with an appropriate control, as such changes may be of toxicological, immunological, or nutri- tional concern. The OECD, the European Commission, EU member states, and the European biotechnology industry association (EuropaBio) are now drafting “minimum lists” to underpin “substantial equivalence.” Although this is a good first step, there are some discrepancies among these drafts. For example, in the case of GM maize, the Dutch authorities have required additional data about five secondary metabolites that have not been included in the list proposed by EuropaBio. Despite these differences, the efforts made by different bodies to stan- dardize these lists should be welcomed. In July 2001, the European Commission proposed to abandon the “light” notifica- tion procedure, which would mean that all GM food (components) would need to undergo a full authorization process. Their safety assessment obviously still requires a systematic detection of unintended changes GM food (components) compared with an appropriate control. But whether it is useful in that context to cling the term “substantial equivalence” is doubtful. Piet Schenkelaars, Schenkelaars Biotechnology Consultancy, Niels Bohrweg 11–13, 2333 CA Leiden, The Netherlands ([email protected]) 1. Millstone, E., Brunner, E., & Mayer, S. Nature 401, 525–526 (1999). 2. Schenkelaars Biotechnology Consultancy. GM food crops and application of substantial equivalence in the European Union. Commissioned by Consumentenbond and the Dutch Foundation ‘Consument & Biotechnologie’ (SBC, Leiden, The Netherlands, June 2001). The full report can be downloaded at http://www.consubiotech.nl/ 119 Rethinking substantial equivalence To the editor: In 1993, the Organisation for Economic Cooperation and Development (OECD; Paris) introduced the concept of substantial equivalence as a guiding principle for safety assessment of food containing a GM compo- nent. Since then, several meetings of experts sponsored by the OECD or jointly by the Food and Agricultural Organization (Rome) and World Health Organization (Geneva, Switzerland) have endorsed the use of this concept in regulatory decision-making. Under European Union (EU; Brussels) “Novel Food” Regulation 258/97, establish- ment of the “substantial equivalence” of a GM food (component) also is used to deter- mine whether a “light” notification proce- dure or a “heavy” authorization procedure is followed for a particular product. In recent years, scientists concerned about the potential health risks of GM foods have challenged substantial equivalence as inade- quate for assessing food safety. In 1999, for example, a commentary in Nature 1 labeled the concept “inherently anti-scientific because it was created to provide an excuse for not requiring biochemical and toxicolog- ical tests.” Against this background, our consultancy was commissioned by the Dutch Consumentbond and the European con- sumer organization Bureau Européen des Unions de Consommateurs (BEUC) to study the application of substantial equivalence in ES cell media To the editor: The article by Xu et al. in the October issue describes the successful feeder-free propaga- tion of undifferentiated human embryonic stem (ES) cells (Nat. Biotechnol. 19, 971–974, 2001). The authors reported, however, that in conditioned media from mouse embryonic cell lines and from human immortalized lines, the feeder-free human ES cells did not retain all the features of cells grown on feeder layers. Did Xu et al. have the occasion to test human embryonic fibroblasts, which are available from cell repositories like the American Type Culture Collection (Manassas, VA) and the European Collection of Cell Cultures (Salisbury, UK), as feeders or as a source of conditioned medium? The answer might be of great help to the growing scientific community involved in the study of human ES cells. Massimo Battaglia, Institute of Neurobiology and Molecular Medicine, Consiglio Nazionele delle Ricerche, Rome, Italy ([email protected]) Chunhui Xu and Melissa Carpenter reply: We demonstrated that human embryonic stem (hES) cells can be maintained on appro- priate matrices and media conditioned by irradiated primary mouse feeders (MEF- CM) while maintaining all of the essential features of hES cells grown on feeders. When hES cells were grown in conditioned media from a human telomerase immortalized neonatal fibroblast line (BJ5ta) and embry- onic murine fibroblast lines (NHG 190 and STO), fewer colonies with appropriate mor- phology were observed. Evaluation of addi- tional immortalized human cell lines is cur- rently in progress. Chunhui Xu and Melissa K. Carpenter, Geron Corporation, Menlo Park, CA ([email protected]) © 2002 Nature Publishing Group http://biotech.nature.com

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http://biotech.nature.com • FEBRUARY 2002 • VOLUME 20 • nature biotechnology

tide. Our results broaden the hypothesis ofMourez et al. that the YWWL sequence maybind to the PA heptamer at the hydrophobicarea that interacts with the EF/LF factors(Fig. 1B,C), and identify the crucial site.

Using the technology devised for a much-publicized distributed-computing screen-saver project4, which now uses more than 1 million computers, we plan to initiate amassively distributed search among a virtuallibrary of 3.5 billion small molecules forcompounds that can bind to the PA heptamer–binding site identified by ouralgorithm2. Our approach may suggest newmolecules that can prevent the assembly ofthe anthrax toxin complex.

Meir Glick, Guy H. Grant,and W. Graham Richards, Department of

Chemistry, Central Chemistry Laboratory,University of Oxford, South Parks Road,

Oxford, OX1 3QH, UK([email protected])

1. Pannifer, A.D. et al. Nature 414, 229–233 (2001).2. Glick, M., Robinson, D.D., Grant, G.H., & Richards

W.G. J. Am. Chem. Soc., in press (2002).3. Petosa, C. et al. Nature 385, 833–838 (1997).4. http://www.chem.ox.ac.uk

the EU, so as to provide input to a workshoporganized by BEUC in September 20012.

To that end, we analyzed several notifica-tion dossiers for products derived from GMvarieties of maize and refined oil derivedfrom GM varieties of oilseed rape. Ouranalysis showed that compositional datasubmitted on the content of macro- andmicronutrients, vitamins, inherent planttoxins, and anti-nutrients lacked consisten-cy from case to case. Furthermore, thedesign of the GM crop field trial, the geo-graphical locations and seasons of plantingand harvesting, and the choice of controldiffered considerably from case to case.These case studies illustrated the lack of anoperational definition of the concept ofsubstantial equivalence in the EU.

As an alternative model, we have pro-posed that an operational definition forfood-safety assessment should include aminimum list of macro- and micronutri-ents, anti-nutrients, inherent plant toxins,secondary metabolites, and allergens to beanalyzed for each GM crop species and oftheir baseline concentrations in conven-tional varieties. It is also necessary to cre-ate detailed protocols to guide the designof field trials, to establish validated tech-niques that can reliably ascertain the con-tent of these compounds in plants, and touse common methods to analyze the datastatistically.

The participants at the BEUC workshopconcluded that “substantial equivalence”has been a controversial and misleadingterm for consumers that should not be usedin regulatory decision-making. They recog-nized that it remains crucial to systematical-ly detect unintended changes in the compo-sition of GM crops compared with anappropriate control, as such changes may beof toxicological, immunological, or nutri-tional concern.

The OECD, the European Commission,EU member states, and the Europeanbiotechnology industry association(EuropaBio) are now drafting “minimumlists” to underpin “substantial equivalence.”Although this is a good first step, there aresome discrepancies among these drafts. Forexample, in the case of GM maize, the Dutchauthorities have required additional dataabout five secondary metabolites that havenot been included in the list proposed byEuropaBio. Despite these differences, theefforts made by different bodies to stan-dardize these lists should be welcomed.

In July 2001, the European Commissionproposed to abandon the “light” notifica-tion procedure, which would mean that allGM food (components) would need toundergo a full authorization process. Theirsafety assessment obviously still requires a

systematic detection of unintended changesGM food (components) compared with anappropriate control. But whether it is usefulin that context to cling the term “substantialequivalence” is doubtful.

Piet Schenkelaars, SchenkelaarsBiotechnology Consultancy, Niels Bohrweg

11–13, 2333 CA Leiden, The Netherlands([email protected])

1. Millstone, E., Brunner, E., & Mayer, S. Nature 401,525–526 (1999).

2. Schenkelaars Biotechnology Consultancy. GM foodcrops and application of substantial equivalence inthe European Union. Commissioned byConsumentenbond and the Dutch Foundation‘Consument & Biotechnologie’ (SBC, Leiden, TheNetherlands, June 2001). The full report can bedownloaded at http://www.consubiotech.nl/

119

Rethinking substantial equivalence

To the editor:In 1993, the Organisation for EconomicCooperation and Development (OECD;Paris) introduced the concept of substantialequivalence as a guiding principle for safetyassessment of food containing a GM compo-nent. Since then, several meetings of expertssponsored by the OECD or jointly by theFood and Agricultural Organization (Rome)and World Health Organization (Geneva,Switzerland) have endorsed the use of thisconcept in regulatory decision-making.Under European Union (EU; Brussels)“Novel Food” Regulation 258/97, establish-ment of the “substantial equivalence” of aGM food (component) also is used to deter-mine whether a “light” notification proce-dure or a “heavy” authorization procedure isfollowed for a particular product.

In recent years, scientists concerned aboutthe potential health risks of GM foods havechallenged substantial equivalence as inade-quate for assessing food safety. In 1999, forexample, a commentary in Nature1 labeledthe concept “inherently anti-scientificbecause it was created to provide an excusefor not requiring biochemical and toxicolog-ical tests.”

Against this background, our consultancywas commissioned by the DutchConsumentbond and the European con-sumer organization Bureau Européen desUnions de Consommateurs (BEUC) to studythe application of substantial equivalence in

ES cell media

To the editor:The article by Xu et al. in the October issuedescribes the successful feeder-free propaga-tion of undifferentiated human embryonicstem (ES) cells (Nat. Biotechnol. 19, 971–974,2001). The authors reported, however, that inconditioned media from mouse embryoniccell lines and from human immortalized lines,the feeder-free human ES cells did not retainall the features of cells grown on feeder layers.

Did Xu et al. have the occasion to testhuman embryonic fibroblasts, which areavailable from cell repositories like theAmerican Type Culture Collection(Manassas, VA) and the European Collectionof Cell Cultures (Salisbury, UK), as feeders oras a source of conditioned medium? Theanswer might be of great help to the growingscientific community involved in the study ofhuman ES cells.

Massimo Battaglia, Institute of Neurobiologyand Molecular Medicine, Consiglio Nazionele

delle Ricerche, Rome, Italy([email protected])

Chunhui Xu and Melissa Carpenter reply:We demonstrated that human embryonicstem (hES) cells can be maintained on appro-priate matrices and media conditioned byirradiated primary mouse feeders (MEF-CM) while maintaining all of the essentialfeatures of hES cells grown on feeders. WhenhES cells were grown in conditioned mediafrom a human telomerase immortalizedneonatal fibroblast line (BJ5ta) and embry-onic murine fibroblast lines (NHG 190 andSTO), fewer colonies with appropriate mor-phology were observed. Evaluation of addi-tional immortalized human cell lines is cur-rently in progress.Chunhui Xu and Melissa K. Carpenter, Geron

Corporation, Menlo Park, CA([email protected])

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