resistance to discodermolide, a microtubule- stabilizing ... · resistance to discodermolide, a...

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Resistance to discodermolide, a microtubule- stabilizing agent and senescence inducer, is 4E-BP1dependent Suzan K. Chao a , Juan Lin b , Jurriaan Brouwer-Visser a,c , Amos B. Smith III d , Susan Band Horwitz a,1 , and Hayley M. McDaid a,e,1 a Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY 10461; b Albert Einstein Cancer Center Division of Biostatistics, Albert Einstein College of Medicine, Bronx, NY 10461; c Division of Gynecologic Oncology, Department of Obstetrics and Gynecology & Womens Health, Albert Einstein College of Medicine, Bronx, NY 10461; d Department of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104; and e Department of Medicine (Oncology), Albert Einstein College of Medicine, Bronx, NY 10461 Contributed by Susan Band Horwitz, November 16, 2010 (sent for review August 22, 2010) Discodermolide is a microtubule-stabilizing agent that induces ac- celerated cell senescence. A discodermolide-resistant cell line, AD32, was generated from the human lung cancer cell line A549. We hypothesize that the major resistance mechanism in these cells is escape from accelerated senescence. AD32 cells have decreased levels of 4E-BP1 mRNA and protein, relative to the parental disco- dermolide-sensitive A549 cells. Lentiviral-mediated re-expression of wild-type 4E-BP1 in AD32 cells increased the proliferation rate and reverted resistance to discodermolide via restoration of dis- codermolide-induced accelerated senescence. Consistent with this, cell growth and response to discodermolide was conrmed in vivo using tumor xenograft models. Furthermore, reintroduction of a nonphosphorylatable mutant (Thr-37/46 Ala) of 4E-BP1 was able to partially restore sensitivity and enhance proliferation in AD32 cells, suggesting that these effects are independent of phosphor- ylation by mTORC1. Microarray proling of AD32-resistant cells versus sensitive A549 cells, and subsequent unbiased gene ontol- ogy analysis, identied molecular pathways and functional group- ings of differentially expressed mRNAs implicated in overcoming discodermolide-induced senescence. The most statistically signi- cant classes of differentially expressed genes included p53 signal- ing, G2/M checkpoint regulation, and genes involved in the role of BRCA1 in the DNA damage response. Consistent with this, p53 protein expression was up-regulated and had increased nuclear localization in AD32 cells relative to parental A549 cells. Further- more, the stability of p53 was enhanced in AD32 cells. Our studies propose a role for 4E-BP1 as a regulator of discodermolide-induced accelerated senescence. drug resistance | senescence reversion | TOR signaling M icrotubule-stabilizing agents bind to microtubules and abolish their dynamic behavior. The prototype for this class of chemotherapeutics is Taxol, an antitumor drug used exten- sively for the treatment of breast, ovarian, and lung carcinomas. The development of Taxol-resistant tumors in patients led to a search for new compounds with mechanisms of action similar to Taxol. One of the compounds identied, discodermolide (disco), which was isolated from the Carribbean sea sponge, Discodermia dissoluta, acts synergistically with Taxol, does not exhibit cross-resistance to Taxol-resistant cells, and is a potent inducer of accelerated senescence (13). Disco was originally identied as an immunosuppressant and was compared with other drugs in this class of compounds such as rapamycin (4, 5). Due to this characterization, we proceeded to investigate whether disco had an effect on mTORC1 (mammalian target of rapamycin complex 1) signaling. Accelerated cell senescence(ACS), premature senescence,and senescence-like growth arrestare all terms that character- ize the phenotype of tumor cells that have become growth arrested in response to treatment with a variety of chemothera- peutic agents (6). Many stimuli can trigger senescence, including telomere shortening (replicative senescence), oncogene activa- tion, and DNA damage. The cellular program executing senes- cence is dependent on DNA damage checkpoints and mitogenic signaling networks including STAT1, RAS, and PI3K (79). Se- nescence is considered a tumor-suppressive mechanism in many malignancies (10), and the appreciation that many chemothera- peutic agents induce senescence has prompted a resurgence of interest in prosenescent anti-cancer therapies. eIF4E, a translation initiation factor that recognizes the 7- methyl-guanosine cap structure, is overexpressed in many cancers and is known to induce cellular senescence (11) by regulating a specic subset of mRNAs involved in tumorigenesis. 4E-BPs (eIF4E-binding proteins) negatively regulate eIF4E and have been implicated in p53-mediated senescence (12). Here we de- scribe a human tumor cell line, which has escaped ACS and has low 4E-BP1 expression. Upon reintroduction of 4E-BP1, these cells undergo ACS when challenged with disco. Our experiments support a role for 4E-BP1 as a regulator of ACS and provide evidence for reversal of chemotherapy-induced senescence. Results Isolation of a Discodermolide-Resistant Cell Line. The ability of disco to induce ACS was discerned when several attempts to develop disco-resistant cell lines from many different tumor cell types proved unsuccessful. One resistant cell line was obtained from A549 lung carcinoma cells after prolonged stepwise selection with the drug and is the focus of this study. This cell line, AD32, was derived from A549 cells and is the only disco-resistant cell line that has been reported. Unlike other cell lines that are re- sistant to microtubule-stabilizing drugs, AD32 cells do not dis- play any of the classic mechanisms of resistance such as β-tubulin mutations or overexpression of the multidrug resistance efux pump, P-glycoprotein. In effect, these cells are resistant to ACS, the result of disco treatment. Discodermolide-Resistant Cells Have Reduced 4E-BP1 Expression. Disco-resistant clones, cultured in increasing concentrations of drug, were isolated. The increase in disco resistance corre- sponded to decreasing levels of 4E-BP1 (Fig. 1A). The AD32 cell line was selected for further study due to its ability to proliferate in the presence or absence of 32 nM disco, making it the most Author contributions: S.K.C., S.B.H., and H.M.M. designed research; S.K.C., J.L., J.B.-V., and H.M.M. performed research; A.B.S. contributed new reagents/analytic tools; S.K.C., J.L., S.B.H., and H.M.M. analyzed data; and S.K.C., S.B.H., and H.M.M. wrote the paper. The authors declare no conict of interest. Data deposition: The microarray reported in this paper have been deposited in the Gene Expression Omnibus (GEO) database, www.ncbi.nlm.nih.gov/geo (accession no. GSE25904). 1 To whom correspondence may be addressed. E-mail: [email protected] or [email protected]. This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10. 1073/pnas.1016962108/-/DCSupplemental. www.pnas.org/cgi/doi/10.1073/pnas.1016962108 PNAS | January 4, 2011 | vol. 108 | no. 1 | 391396 PHARMACOLOGY Downloaded by guest on January 27, 2021

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Page 1: Resistance to discodermolide, a microtubule- stabilizing ... · Resistance to discodermolide, a microtubule-stabilizing agent and senescence inducer, is 4E-BP1–dependent Suzan K

Resistance to discodermolide, a microtubule-stabilizing agent and senescence inducer,is 4E-BP1–dependentSuzan K. Chaoa, Juan Linb, Jurriaan Brouwer-Vissera,c, Amos B. Smith IIId, Susan Band Horwitza,1, andHayley M. McDaida,e,1

aDepartment of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY 10461; bAlbert Einstein Cancer Center Division of Biostatistics,Albert Einstein College of Medicine, Bronx, NY 10461; cDivision of Gynecologic Oncology, Department of Obstetrics and Gynecology & Women’s Health,Albert Einstein College of Medicine, Bronx, NY 10461; dDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104; and eDepartmentof Medicine (Oncology), Albert Einstein College of Medicine, Bronx, NY 10461

Contributed by Susan Band Horwitz, November 16, 2010 (sent for review August 22, 2010)

Discodermolide is a microtubule-stabilizing agent that induces ac-celerated cell senescence. A discodermolide-resistant cell line,AD32, was generated from the human lung cancer cell line A549.We hypothesize that the major resistance mechanism in these cellsis escape from accelerated senescence. AD32 cells have decreasedlevels of 4E-BP1 mRNA and protein, relative to the parental disco-dermolide-sensitive A549 cells. Lentiviral-mediated re-expressionof wild-type 4E-BP1 in AD32 cells increased the proliferation rateand reverted resistance to discodermolide via restoration of dis-codermolide-induced accelerated senescence. Consistent with this,cell growth and response to discodermolide was confirmed in vivousing tumor xenograft models. Furthermore, reintroduction ofa nonphosphorylatable mutant (Thr-37/46 Ala) of 4E-BP1 was ableto partially restore sensitivity and enhance proliferation in AD32cells, suggesting that these effects are independent of phosphor-ylation by mTORC1. Microarray profiling of AD32-resistant cellsversus sensitive A549 cells, and subsequent unbiased gene ontol-ogy analysis, identified molecular pathways and functional group-ings of differentially expressed mRNAs implicated in overcomingdiscodermolide-induced senescence. The most statistically signifi-cant classes of differentially expressed genes included p53 signal-ing, G2/M checkpoint regulation, and genes involved in the role ofBRCA1 in the DNA damage response. Consistent with this, p53protein expression was up-regulated and had increased nuclearlocalization in AD32 cells relative to parental A549 cells. Further-more, the stability of p53 was enhanced in AD32 cells. Our studiespropose a role for 4E-BP1 as a regulator of discodermolide-inducedaccelerated senescence.

drug resistance | senescence reversion | TOR signaling

Microtubule-stabilizing agents bind to microtubules andabolish their dynamic behavior. The prototype for this class

of chemotherapeutics is Taxol, an antitumor drug used exten-sively for the treatment of breast, ovarian, and lung carcinomas.The development of Taxol-resistant tumors in patients led toa search for new compounds with mechanisms of action similarto Taxol. One of the compounds identified, discodermolide(disco), which was isolated from the Carribbean sea sponge,Discodermia dissoluta, acts synergistically with Taxol, does notexhibit cross-resistance to Taxol-resistant cells, and is a potentinducer of accelerated senescence (1–3). Disco was originallyidentified as an immunosuppressant and was compared withother drugs in this class of compounds such as rapamycin (4, 5).Due to this characterization, we proceeded to investigatewhether disco had an effect on mTORC1 (mammalian target ofrapamycin complex 1) signaling.“Accelerated cell senescence” (ACS), “premature senescence,”

and “senescence-like growth arrest” are all terms that character-ize the phenotype of tumor cells that have become growtharrested in response to treatment with a variety of chemothera-peutic agents (6). Many stimuli can trigger senescence, including

telomere shortening (replicative senescence), oncogene activa-tion, and DNA damage. The cellular program executing senes-cence is dependent on DNA damage checkpoints and mitogenicsignaling networks including STAT1, RAS, and PI3K (7–9). Se-nescence is considered a tumor-suppressive mechanism in manymalignancies (10), and the appreciation that many chemothera-peutic agents induce senescence has prompted a resurgence ofinterest in prosenescent anti-cancer therapies.eIF4E, a translation initiation factor that recognizes the 7-

methyl-guanosine cap structure, is overexpressed in many cancersand is known to induce cellular senescence (11) by regulatinga specific subset of mRNAs involved in tumorigenesis. 4E-BPs(eIF4E-binding proteins) negatively regulate eIF4E and havebeen implicated in p53-mediated senescence (12). Here we de-scribe a human tumor cell line, which has escaped ACS and haslow 4E-BP1 expression. Upon reintroduction of 4E-BP1, thesecells undergo ACS when challenged with disco. Our experimentssupport a role for 4E-BP1 as a regulator of ACS and provideevidence for reversal of chemotherapy-induced senescence.

ResultsIsolation of a Discodermolide-Resistant Cell Line. The ability of discoto induce ACS was discerned when several attempts to developdisco-resistant cell lines from many different tumor cell typesproved unsuccessful. One resistant cell line was obtained fromA549 lung carcinoma cells after prolonged stepwise selectionwith the drug and is the focus of this study. This cell line, AD32,was derived from A549 cells and is the only disco-resistant cellline that has been reported. Unlike other cell lines that are re-sistant to microtubule-stabilizing drugs, AD32 cells do not dis-play any of the classic mechanisms of resistance such as β-tubulinmutations or overexpression of the multidrug resistance effluxpump, P-glycoprotein. In effect, these cells are resistant to ACS,the result of disco treatment.

Discodermolide-Resistant Cells Have Reduced 4E-BP1 Expression.Disco-resistant clones, cultured in increasing concentrations ofdrug, were isolated. The increase in disco resistance corre-sponded to decreasing levels of 4E-BP1 (Fig. 1A). The AD32 cellline was selected for further study due to its ability to proliferatein the presence or absence of 32 nM disco, making it the most

Author contributions: S.K.C., S.B.H., and H.M.M. designed research; S.K.C., J.L., J.B.-V., andH.M.M. performed research; A.B.S. contributed new reagents/analytic tools; S.K.C., J.L.,S.B.H., and H.M.M. analyzed data; and S.K.C., S.B.H., and H.M.M. wrote the paper.

The authors declare no conflict of interest.

Data deposition: The microarray reported in this paper have been deposited in the GeneExpression Omnibus (GEO) database, www.ncbi.nlm.nih.gov/geo (accession no.GSE25904).1To whom correspondence may be addressed. E-mail: [email protected] [email protected].

This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1016962108/-/DCSupplemental.

www.pnas.org/cgi/doi/10.1073/pnas.1016962108 PNAS | January 4, 2011 | vol. 108 | no. 1 | 391–396

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stable cell line available for use at the beginning of this study.The cells are approximately sevenfold resistant to disco (Table 1)and have threefold less 4E-BP1 protein than A549 cells (Fig. S1).A549 cells treated with disco for up to 1 h have no change in theexpression or phosphorylation of 4E-BP1 (Fig. S2 A and B).

Treatment of A549 with disco for up to 4 d, the time frame fordevelopment of an obviously senescent phenotype, did not alterlevels of total 4E-BP1 (Fig. 1B). These data suggest that reducedexpression of 4E-BP1 is not due to the induction and mainte-nance of senescence, but rather to escape from ACS.The 4E-BP protein family consists of 4E-BP1, 4E-BP2, and 4E-

BP3 that act as translational repressors by binding to eIF4E andpreventing its interaction with eIF4G. 4E-BP2 has high sequencesimilarity to 4E-BP1 (13); however, unlike 4E-BP1, levels of 4E-BP2 were not altered in the disco-resistant clones (Fig. S2C). 4E-BP3 is highly divergent and not well characterized, with only 57%identity to 4E-BP1 (14). 4E-BP1 is the most studied of the familymembers and a known substrate of mTORC1. Upon mTORC1activation, 4E-BP1 is phosphorylated on Thr37 and Thr46,whereby it becomes primed for subsequent phosphorylation atSer65 and Thr70 (15). Hyperphosphorylation of 4E-BP1 causes itto dissociate from eIF4E and results in enhanced translation ini-tiation of defined subsets of mRNA (16). Conversely, mTORC1inhibition by rapamycin leads to sequestration of eIF4E by 4E-BP1 and to decreased translation efficiency. Rapamycin treatmentof A549 cells dephosphorylates 4E-BP1 as expected (Fig. 1A),indicating that 4E-BP1 is functioning normally in the parental cellline. Conversely, acute treatment of A549 cells with disco does notdephosphorylate 4E-BP1 or the other mTORC1 substratesp70S6k and rpS6 (Fig. S2 A, B, D, and E), suggesting that disco isnot directly modulating the mTORC1 pathway. Furthermore, 4E-BP1 in AD32 cells binds eIF4E, as shown by m7GTP Sepharoseaffinity chromatography, and responds to rapamycin treatmentnormally by increasing association with eIF4E (Fig. 1C). Thesedata suggest that, despite reduced expression in AD32 cells, 4E-BP1 is still functional as a translational repressor. However, AD32cells are resistant to rapamycin (Table S1), and this may be relatedto the reduced level of eIF4E and 4E-BP1 in AD32 relative toA549 (Fig. S3) as suggested previously (17). Recent observationsindicate that rapamycin has equal activity in both 4E-BP double-knockout and 4E-BP wild-type mouse embryonic fibroblasts(MEFs), demonstrating that 4E-BP expression does not predictresponse to rapamycin (18). Alternatively, cross-resistance torapamycin may be due to inherent differences in DNA repairbetween A549 and AD32 cells. In support of this observation isthe finding that colorectal cells with defects in mismatch repair arehypersensitive to rapamycin (19).4E-BP1 is hyperphosphorylated by constitutive activation of

the PI3K/AKT/mTOR pathway or MAPK pathway via its acti-vation of mTORC1 (20). Disco-induced senescence onset inA549 is associated with phosphorylation of AKT Thr308 at days3 and 4 coupled with dephosphorylation of 4E-BP1 Ser65 (Fig.1B). This is likely due to the cessation of proliferation and in-creased cell survival signaling associated with senescence.Therefore, dephosphorylation of 4E-P1 at Ser65 indicates disco-induced ACS, although no changes were observed in total 4E-BP1 expression at days 3 and 4 when cells were senescent. Fur-thermore, increased phosphorylation of ERK Thr202/Tyr204and MEK Ser217/221 was observed in senescent cells (Fig. 1B),consistent with previous observations (1, 21). Therefore, the datahere support dissociation of PI3K/MAPK signaling from 4E-BP1phosphorylation and expression during ACS.AD32, which has escaped senescence, retains AKT Thr308,

MEK Ser217/221, and ERK Thr202/Tyr204 phosphorylation(Fig. 1B). However, total 4E-BP1 expression was drastically re-duced in AD32 cells relative to their senescent A549 precursor,whereas Ser65 phosphorylation is unchanged. This suggests thatchanges in total 4E-BP1 expression, rather than 4E-BP1 Ser65phosphorylation, facilitate escape from ACS.Disco-resistant clones show an increase in mTORC1 phos-

phorylation at Ser2448, indicating activation of mTORC1 with anincreasing level of resistance (Fig. 1A). Importantly, phosphoryla-tion at Ser65, relative to total 4E-BP1 expression, was unchanged(Fig. 1A), suggesting that the activity of 4E-BP1 is independentfrom mTORC1 in disco-resistant cell lines. From these experi-ments, we conclude that disco has a mechanism of action that is

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Fig. 1. Discodermolide-resistant cells (AD16, 24, 32, 50, 64) have diminishedtotal 4E-BP1 protein. (A) Expression of 4E-BP1 is correlated with drug re-sistance. Immunoblot analysis of 4E-BP1, phospho 4E-BP1, and phosphomTORC1 in resistant clones relative to drug-sensitive A549 cells is shown. (B)Induction of senescence by disco does not alter total 4E-BP1 expression inA549 cells. Immunoblot of 4E-BP1, phospho 4E-BP1, phospho AKT, phsophoMEK, and phospho ERK1/2 after treatment of A549 with 32 nM disco for 0–4d, the time for senescence onset. (C) m7-GTP-Sepharose chromatographyand immunoblot of 4E-BP1 and eIF4E. Cells were treated with either DMSO,disco, or rapamycin (Rap) for 2 h. (D) Ratio of 4E-BP1/eIF4E values is repre-sentative of three independent experiments (±SEM).

392 | www.pnas.org/cgi/doi/10.1073/pnas.1016962108 Chao et al.

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distinct from rapamycin, and 4E-BP1’s role in escaping senes-cence may be independent from its regulation by mTORC1.

4E-BP1 Overexpression in AD32 Cells Reverses DiscodermolideResistance and Resensitizes Cells to ACS. To determine whetherthe expression of 4E-BP1 contributes to disco resistance, AD32cells were infected with lentivirus expressing 4E-BP1 or emptyvector (AD324E-BP1 and AD32EV) (Fig. 2A). Overexpression of4E-BP1 restored sensitivity to disco in AD32 cells (Table 1),suggesting that the resistance to disco is mediated via 4E-BP1.A549 cells overexpressing 4E-BP1 (A5494E-BP1), unlike AD32,demonstrated no change in sensitivity to disco, suggesting that,although 4E-BP1 plays a critical role in disco resistance, itprobably functions with other proteins as part of a regulatorycircuit that has been perturbed in AD32 cells.Overexpression of a 4E-BP1 nonphosphorylatable (Thr37/

46Ala) mutant that prevents 4E-BP1 dissociation from eIF4E (15)partially restored sensitivity to disco (Table 1), although the ex-pression of total 4E-BP1 was ≈30% less than the level of over-expression achieved in AD324E-BP1 (Fig. S4). This difference inexpression levelmay account for the inability to completely restoresensitivity to disco. Thus, these sites, which are considered to beprimarily regulated by mTORC1 and are required for the orderedhierarchy of 4E-BP1 phosphorylation, are redundant in this sys-tem and do not appear to be involved in escape from senescence.Primary fibroblasts that lack 4E-BP1 and 4E-BP2 but express

wild-type p53 undergo premature senescence and display a de-creased population doubling time (12). Both A549 and AD32cells express wild-type p53 and do not express p16INK4a. Todetermine whether increased expression of 4E-BP1 affects pro-liferation, the doubling time was determined. Overexpression of4E-BP1 in both A549 and AD32 cells increased proliferationrates (Table 1). Conversely, lentiviral transduction of A549 cellswith an shRNA targeting 4E-BP1 had a reduced proliferationrate (Table 1), suggesting that 4E-BP1 modulates proliferationand that the slower growth of AD32 cells is due, at least in part,to a reduced level of 4E-BP1 protein expression.Although it has been previously observed that p53−/− 4E-BP

double-knockout MEFs proliferate more rapidly than wild-typeMEFs under serum-starved conditions (18), 4E-BP1 over-expression in asynchronous A549 cells was found to increaseproliferation (Table 1). In breast cancer, 4E-BP1 is overexpressed(22) and may cause enhanced tumorigenicity, thereby supportinga role for 4E-BP1 in accelerating proliferation. It is plausible that,because several signaling pathways are proposed to converge on4E-BPs, the outcome, in terms of proliferation, depends upon thenature of the stimulus and the functional status of upstreamregulators, including p53.Senescent cells have a large, flat appearance accompanied by in-

creased cytoplasmic area and granularity and have β-galactosidase

activity at pH 6 (23). AD32 cells had a higher basal level ofsenescence-associated β-galactosidase (SA-β-gal)–positive cellsthan A549—0.40% and 0.07%, respectively (Fig. 2B). However,this change in basal senescence rate is not sufficient to compensatefor the difference in doubling time observed between AD32 andA549 (Table 1). AD324E-BP1 cells, when challenged with 32 nMdisco, had 95.7% SA-β-gal–positive cells (Fig. 2B), demonstratingthat re-expression of 4E-BP1 in AD32 restores sensitivity to ACSin these cells and indicates that 4E-BP1 has a role in regu-lating senescence.

4E-BP1 Modulates Tumor Growth Rate in a Tumor Xenograft Model.To determine if ectopic expression of 4E-BP1 in AD32 cellswould reverse the proliferation rate and resistance to disco invivo, the cells were grown as xenografts in nude mice. Tumorgrowth rates were determined by measuring the percentage ofchange in tumor volume compared with initial tumor volume.AD32 tumors grew slower than either A549 or AD324E-BP1, eventhough the mice were injected with twice as many cells. Thegrowth of AD324E-BP1 tumors closely paralleled that of A549cells (Fig. 3A). The fold decrease in tumor volume at day 25,relative to vehicle-only controls, indicated that AD324E-BP1 andA549 tumors decreased by 2.5- and 2.0-fold, whereas AD32tumors decreased by 1.6-fold. Thus, the greatest response to drugtreatment was observed in tumor models with higher levels of4E-BP1 that proliferate more rapidly. Furthermore, immuno-histochemical analysis of xenograft tumors using the pro-liferation marker Ki-67 indicated that AD324E-BP1 and A549xenografts had a greater number of positive cells compared withAD32 tumors (Fig. 3B). Although AD32 cells are resistant todisco, they are sensitive to higher concentrations of drug, whichrationalizes their response in vivo where high doses were used.

Table 1. Cytotoxicity to discodermolide and proliferation rateof cell lines

Cell line Doubling time (h) Disco IC50 (nM) Fold resistance

A549 22.1 ± 1.3 17.7 ± 7.8 1.0AD32 31.0 ± 0.7 125.9 ± 16.8 7.1A549EV 23.8 ± 2.1 18.0 ± 11.3 1.0A5494E-BP1 15.2 ± 1.5 23.2 ± 0.2 1.3A549sh RNA 20.9 ± 3.53 19.9 ± 4.4 1.1A549sh 4E-BP1 29.8 ± 1.1 21.0 ± 3.9 1.2AD32EV 29.8 ± 2.1 136.7 ± 4.6 7.7AD32Ala-37/46 22.8 ± 0.9 43.3 ± 13.3 2.4AD324E-BP1 18.3 ± 0.8 18.3 ± 8.2 1.0AD32sh RNA 30.2 ± 0.9 130.7 ± 2.3 7.3AD32sh p53 29.6 ± 0.4 117.9 ± 7.6 6.6

Cytotoxicitywas determinedby sulforhodamine B assay, and values are IC50

(±SEM). Proliferation rate was determined by population doublings, and val-ues are in hours (±SEM). Fold resistance was calculated relative to A549 cells.

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Fig. 2. 4E-BP1 alters proliferation and sensitivity to discodermolide-inducedsenescence. (A) Immunoblot of 4E-BP1 expression in A549 and AD32 tran-duced with lentivirus. (B) SA-β-galactosidase activity. Cells were treated witheither DMSO (vehicle) or disco (32 nM) for 4 d and then fixed and stained.Percentage positive for β-galactosidase staining (±SEM) is indicated belowthe respective images.

Chao et al. PNAS | January 4, 2011 | vol. 108 | no. 1 | 393

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These data validate our in vitro findings and provide strong ev-idence in support of a role for 4E-BP1 in modulating pro-liferation and sensitivity to disco-induced ACS.

Identifying Molecular Pathways Involved in Discodermolide-InducedSenescence. To determine which genes may be involved in thereversion and escape of disco-induced ACS, we performed geneexpression profiling of AD32, A549, and AD324E-BP1. Two com-parisons were made: (i) AD32 versus AD324E-BP1 to identify 4E-BP1 regulatory genes involved in escaping ACS and (ii) AD32versus A549 to identify genes involved in ACS reversion. Sub-sequent unbiased gene ontology analysis of all transcripts wasperformed using Ingenuity Pathways Analysis (IPA) (IngenuitySystems) for all comparisons with greater or less than a 1.5-log2ratio change. IPA identifies themolecular networks and canonicalsignaling pathways that are most significantly perturbed in a fil-tered dataset. This analysis confirmed that genes regulated duringACS reversion andACS escape were enriched for functions in cellproliferation, DNAdamage response, and p53 signaling (Fig. 4A).A set of 39 genes from these classes was used to generate

a heat map, using senescent A549 as a common reference, be-cause the precursor cells from which AD32 was derived weresenescent cells (Fig. 4B). This gene set was highly enriched forp53-inducible transcripts, highlighting the importance of thispathway in the reversion of ACS. A subset of the 39 genesidentified was validated by quantitative RT-PCR (Table S2). Asimilar analysis using A549 cells as a reference identified many ofthe same genes (Fig. S5). Although not a major pathway impli-cated in our analysis, but still statistically significant, the acutephase response or inflammation response was identified ina comparison between AD32 cells and senescent A549 cells. Thisclass of genes included those involved in extracellular matrixremodeling such as fibronectin, serpinA3, and peptidases (TableS3). These specific genes have not been previously identified asbeing involved in ACS; however, this pattern of gene expressionis consistent with previous studies that document the role of theDNA damage response in initiating an inflammatory responseassociated with senescence (8, 24). Thus, genome-wide analysesstrongly indicates a significant role for the DNA damage re-sponse in disco-induced ACS, reversion, and escape.

4E-BP1 Modulates the Expression and Stability of p53. To probe therelationship between p53 and 4E-BP1 further, we determinedthe expression of both in disco-resistant clones and found aninverse relationship (Fig. 5A). Basal levels of p53 protein inAD32 were significantly increased compared with A549 cells,with increased nuclear staining of p53 in AD32 cells by immu-nofluorescence (Fig. 5B). Conversely, AD324E-BP1 cells had de-creased levels of p53 protein, indicating that p53 levels may bedecreased by overexpression of 4E-BP1 in AD32 cells (Fig. 5C).Levels of p53 decreased with overexpression of 4E-BP1, as didlevels of p21, which regulates senescence onset, as well as humanMDM2 (HDM2), which affects the stability of p53 (Fig. 5C).Western blot analysis of cycloheximide-treated A549, AD32, andAD324E-BP1 indicates that p53 is more stable in AD32 (Fig. 5D)and that overexpression of 4E-BP1 reverts the stability of p53 toA549 levels. Phosphorylation of p53 at Ser15, a marker of theDNA damage response (25), was absent in A549 cells andstrongly evident in AD32 cells (Fig. 5D). This site became par-tially dephosphorylated upon re-expression of 4E-BP1, providingevidence for 4E-BP1 regulation of the p53-mediated DNAdamage response in AD32 cells.

DiscussionWe have demonstrated that disco-resistant AD32 cells have de-creased levels of 4E-BP1 and that re-expression in these cellsrestores sensitivity to disco and increases proliferation rate. Sincedisco is a potent inducer of ACS, resensitization to the drug isaccompanied by restoration of senescence. Finally, we show thatrestored sensitivity to disco can be recapitulated in vivo usinga tumor xenograft model. Taken together, our data demonstratethat 4E-BP1 has an important role in disco-induced ACS.4E-BP1 is a key factor that integrates several upstream signals that

drive proliferation and subsequently malignant progression (18, 26).The 4E-BP proteins, like S6, act as integrators for the various com-ponents of bothPI3KandRASsignaling, although they areprimarilycharacterized as downstream effectors of mTORC1. In supportof this, we have previously demonstrated that multitargeted sup-pression of the RAS–PI3K signaling network by MEK inhibitionin combination with rapamycin is synergistic in numerous cancer

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Fig. 3. Re-expression of 4E-BP1 increases proliferation rateand discodermolide sensitivity in a tumor xenograft model.(A) Mice bearing A549, AD32, or AD324E-BP1 xenografts weretreatedwith threeweeklydoses (arrows)ofdisco (10mg/kg i.v.),and tumor volume was calculated. Data are expressed as thepercentage of change in tumor volume (T0) ± SEM of five miceper group. Mice treated with disco are indicated by dashedlines. (B) Immunohistochemistry for Ki-67 in formaldehyde-fixed tumor xenografts.

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cell models. This mechanism is via potent suppression of cap-de-pendent translation and dephosphorylation of S6 and 4E-BP1 (27).Transcriptome profiling indicates that p53 signaling is involved

in disco-induced senescence. Unlike other studies that have showna relationship between increased p53 levels and cell senescence (28),we describe a cell line that, despite expressing increased basal lev-els of p53 and its targets p21 and HDM2, is able to escape ACS.This raises the intriguing possibility that loss of 4E-BP1 me-diates escape from this proliferative arrest despite increased levels ofp53, arguing that disco-induced ACS is more influenced by 4E-BP1than by p53. Previous studies have shown that 4E-BP1 canmodulateexpression of p21 and HDM2 independently of p53 transcriptionalregulation (29, 30). An alternative explanation to rationalize thesurvival ofAD32 cellswith high expressionof p53maybe that p53 actsas a repressor of senescence, as has been recently proposed in a p21-drivenmodel system (31). In another study, it was shown that p53 canrepress the senescence-associated secretory phenotype and that ab-lationofp53 functionactually acceleratesACS(24).Thus, it is possiblethat p53, although ahallmark ofACS,may not have a causative role indriving disco-inducedACS. This is in agreement with previous studiesfrom our lab and others (1, 32) demonstrating that senescence can be

induced in cells with knocked-out or mutant p53. Furthermore, p53knockdown in A549 cells did not prevent disco-induced ACS, andknockdown of p53 inAD32 cells did not alter the proliferation rate orhave an effect on disco sensitivity (Table 1).Using microarray analysis, we identified many mRNAs in-

volved in disco-induced ACS. Interestingly, the transcriptsidentified are mostly involved in the DNA damage response,supporting a role for disco as a senescence inducer that is able toinvoke the DNA damage response. We propose that AD32 cells

AD32 vs A549 (ACS escape)AD32 vs AD324E-BP1 (ACS reversion)

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Fig. 4. Microarray analysis reveals classes of genes involved in 4E-BP1–di-rected discodermolide-accelerated cell senescence. (A) Ingenuity PathwayAnalysis was performed with the complete data set filtered for significance(threshold of P < 0.05), and regulation of canonical pathways (n = 350) wasclassified according to P value. (B) Heat map of log2-ratio (M) values of genesthat are regulated in significant pathways (M > 1.5). Senescent A549 cells areused as a common reference.

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Fig. 5. Inverse relationship between 4E-BP1 and p53 protein levels indiscodermolide-resistant cells. (A) Total 4E-BP1 (green) decreases, whereastotal p53 (red) increases, with resistance to disco. (B) Immunofluorescence ofp53 (red) and HDM2 (green) in A549 and AD32 cells. (C) Immunoblot of totalp53, p21, HDM2, and 4E-BP1. (D) Immunoblot of p53 and phosphorylatedp53 Ser15 expression in A549, AD32, and AD324E-BP1 treated with 50 μg/mLof cycloheximide (Chx) for the indicated times. Graph of the relative level oftotal p53 protein in indicated cell lines during Chx treatment. The p53protein level at 0 h was normalized to GAPDH and set to a relative value of“1.” Values are representative of three independent experiments (±SEM).

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survive by maintaining a system primed for DNA damage repairthat is facilitated by the translation of specific subsets of mRNAscoupled with enhanced transcriptional activity of genes thatregulate repair, with the overall net effect of permitting re-entryinto the cell cycle. In support of this, it has been shown elsewherethat cells undergoing a DNA damage response after ionizingradiation translate specific subsets of mRNAs that enable repair(33). When 4E-BP1 levels were ectopically restored in AD32, theproliferation rate increased, which is consistent with its recentlyproposed function as a regulator of cell proliferation and not cellsize (18), and rechallenging cells with disco caused senescence torecur. It seems likely that 4E-BP1, similarly to p53, integratesa milieu of physiological signals that control cell fate, suggestingmultiple mechanisms that interface between translation andtranscription are used by 4E-BP1 during cellular stress.Although it has been firmly established that 4E-BP1 is an inhibitor

of cap-dependent translation that is regulated viaphosphorylationbymTORC1, there is still much more to learn about 4E-BP1. It hasseven phosphorylation sites andmay be regulated by various kinasesin addition to mTORC1, such as Cdk1, PI3K, ERK1/2, and ATM/ATR (34–37). In addition, the transcription of 4E-BP1 is controlledby various transcription factors, such as SMAD4 and ATF (38, 39).Our data indicate a possiblemTORC1-independent role for 4E-BP1in regulating senescence.Finally, these data and that of others challenge the dogma that

senescence is an irreversible process (21, 40). Although we cannotexclude that our AD32 cells originated from a population that by-passed disco-induced senescence, we consider this highly unlikely ascells were cloned at multiple steps throughout selection and theperiod required for AD32 cells to emerge was extremely long. We

favor a model of escape from ACS that was brought about by ad-ditional genetic or epigenetic changes to a senescent cell that per-mitted re-entry to thecell cycle.This is supportedbyprevious studiesdescribing neosis, the emergence of drug-resistant neoplastic cellsfrom a senescent population (41). Our experimental data confirma regulatory role for 4E-BP1 in overseeing restoration of proli-feration. Consequently, senescence may be regarded only as a per-manent state in theabsenceof further additional genetic alterations,which in the context of human tumors, is unlikely. This may ratio-nalize why many human tumors that have activating mutations inoncogenes that cause senescence, such as RAF and RAS, continueto proliferate due to the accumulation of additional genetic lesionsthat permit escape from senescence.

Materials and MethodsDetailed methods are available in SI Materials and Methods.

A549cellswerepurchasedfromtheAmericanTypeCultureCollection.A549and AD32 were cultured in RPMI medium 1640 (Invitrogen) containing 10%FBS. Stable overexpression of 4E-BP1 by lentiviral transduction was done bysubcloning 4E-BP1 of pACTAG-2–4E-BP1 and pACTAG-2–4E-BP1 Thr37/46 Ala(gift of Nahum Sonenberg, Department of Biochemistry, McGill University,Montreal, QC, Canada) into pHAGE UbcRIG. Stable cell lines were FACS-sortedfor GFP-positive cells. Stable sh4E-BP1, shControl, and shp53 knockdown celllines were selected with 10 μg/mL puromycin after transduction.

ACKNOWLEDGMENTS.WethankL.Klein,M.-E. Legrier, andJ. Chaoforhelpfuldiscussions. This work was supported by National Cancer Institute GrantCA077263, the Breast Cancer Research Foundation, the National Foundationfor Cancer Research, National Institutes ofHealthNational Institute ofGeneralMedical Sciences Training Grant T32 GM007491 (to S.K.C.), and NationalInstitutes of Health Grant K12CA132783-01A1 (to H.M.M.).

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