reference information unless otherwise noted, all mass spectral data was obtained from: national...
DESCRIPTION
Mass Spectrometry What insights are we hoping to gain? Molecular Mass/Isotopic Distribution Molecular Formula Some Structural Characteristics – Fragmentation PatternTRANSCRIPT
![Page 1: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/1.jpg)
Reference InformationUnless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard Reference Database at webbook.nist.gov/chemistry/
Slide 16 image: Integrated Spectral Data Base System for Organic Compounds at www.aist.go.jp/RIODB/SDBS/menu-e
Webspectra at www.chem.ucla.edu/~webspectra/
The picture on slide 4 was obtained from:
![Page 2: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/2.jpg)
Analytical Chemistry• Chromatography (Separations)
• Mass Spectrometry
• Infrared (IR) Spectroscopy
• Nuclear Magnetic Resonance (NMR) Spectroscopy
• X-ray Crystallography (visual solid state molecular structure)
![Page 3: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/3.jpg)
Mass Spectrometry
What insights are we hoping to gain?
• Molecular Mass/Isotopic Distribution
• Molecular Formula
• Some Structural Characteristics – Fragmentation Pattern
![Page 4: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/4.jpg)
Only molecules of the correct m/z (mass/charge) will make it to the detector.
![Page 5: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/5.jpg)
EI-MS of 2,2-Dimethyl Pentane
![Page 6: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/6.jpg)
EI-MS of 2,2-Dimethyl PentaneMolecular ("parent")
ion
Fragment ("daughter") ions
Base peak (largest signal)
Peaks with smaller m/z values __ called fragment ion peaks __
represent positively charged fragments of the parent molecule
![Page 7: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/7.jpg)
EI-MS of 2,2-Dimethyl Pentane
Molecular iontert-butyl cation
(iso) propyl cation
Me Me
Me
methyl cation
ethyl cation
![Page 8: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/8.jpg)
EI-MS of n-Propanol
60
31
42
![Page 9: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/9.jpg)
EI-MS of 4-Heptanone
Qui ckTime™ and a TI FF (Uncompressed) decompressor are needed to see thi s pi cture.
Molecular Ion
![Page 10: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/10.jpg)
EI-MS of 4-Heptanone
QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.
C3H7
OH
(iso) propyl cation
Molecular Ion
acylium ion
• +
![Page 11: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/11.jpg)
EI-MS of 4-Heptanone
Molecular Ion
Why is there a signal higher than the Molecular ion?
![Page 12: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/12.jpg)
Isotopes
![Page 13: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/13.jpg)
EI-MS of Benzyl Bromide
170 172
91
![Page 14: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/14.jpg)
Isotopes
![Page 15: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/15.jpg)
EI-MS of Benzyl Bromide
170 172
91
C7H779Br C7H7
81Br
Benzyl cation
![Page 16: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/16.jpg)
EI-MS of 4-Chloroanisole
QuickTi me™ and a TI FF (PackBi ts) decompressor are needed to see thi s picture.
OMe
Cl
![Page 17: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/17.jpg)
Isotopes
![Page 18: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/18.jpg)
Isotopes
![Page 19: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/19.jpg)
What about Identical Masses?
OH
HN NH
O
cyclohexanol
MW = 100
cyclohexyl urea
MW = 100
How can we tell these structures appart by EI-MS?
![Page 20: Reference Information Unless otherwise noted, all mass spectral data was obtained from: National Institute of Standards and Technology (NIST) Standard](https://reader036.vdocuments.us/reader036/viewer/2022062600/5a4d1b417f8b9ab0599a1118/html5/thumbnails/20.jpg)
Exact Mass
OH
HN NH
O
cyclohexanol
Exact mass = 100.0888
cyclohexyl urea
MW = 100.0637
Most high-resolution EI-MS instruments are accurate within 5ppm (for the above example, that's 0.0005 mass units!