publication workflow in gbif...darwin core standard darwin core (dwc) is a common language designed...

Publication

workflow in GBIF

Katia Cezón

[email protected]

GBIF Spain

Adaptation to the Darwin Core

standard

Validationand quality

control

Online data upload (IPT))

Publicationof the

resource

Adapting the original database to the publishing

format

Digitized data in different formats

AccessExcellMySqlEtc.

Check quality and adjust

content

Upload the datafile and fill in the

metadata

Publish for viewing onhttp://www.gbif.org/http://datos.gbif.es/http://dados.gbif.pt/

etc.

Feedback

Requestendorsement

in GBIF

Formally registerthe institution

http://www.gbif.org/http://datos.gbif.es/http://dados.gbif.pt/

REQUEST

ENDORSEMENT

0

It formally registers your institution and the

collections that to form part of the collection register

and the network of GBIF publishers.

Access to the questionnaire

1

http://www.gbif.org/publishing-data/request-endorsement#/intro

0

1. The publisher has or will have datasets of

potential scientific interest consistent with

GBIF's mission

2. The publisher has technical capacity to ensure

that the datasets are available online in

standard formats

3. The publisher can be expected to respond to

requests for further information or feedback

relating to the data they publish

4. The publisher understands and accepts the

terms of the GBIF GBIF Data Publishers

Agreement

REQUEST

ENDORSEMENT

1

http://www.gbif.org/terms/data-publisher


standard


control


Publicationof the

resource


format




content


metadata


etc.

Feedback

Requestendorsement

in GBIF



ADAPTATION

TO THE

DARWIN CORE

STANDARD

Darwin Core (DwC) is a common language designed to

facilitate the exchange of primary biodiversity data

globally.

• CORE- Contains 169 terms or fields

• EXTENSIONS- 23 packages of thematic extensions

(measures, vernacular names, etc.)

2

OcurrenceTaxonEvent

VernacularNames.txt

References.txtDistribution.txt

CORE

EXTENSIONS

2

It consists of making a correspondence

between the fields (columns) of the original

database and those of the standard Darwin

Core

http://rs.tdwg.org/dwc/terms/

ADAPTATION

TO THE

DARWIN CORE

STANDARD

2

It consists of making a correspondence

between the fields (columns) of the original

database and those of the standard Darwin

Core

Nombre científico: Psammodromusalgirus (Linnaeus, 1758)Reino: AnimaliaFamilia: LacertidaeNº de Herbario: 5265-1Fecha de recolección: 16-Ene-80Determinador: R. GoertCoordenadas: 31TBE65

ScientificName: Psammodromusalgirus (Linnaeus, 1758)Kingdom: AnimaliaFamily: LacertidaeCatalogNumber: 5265-1EventDate: 1980-01-16T04:07-0600IdentifiedBy: R. GoertVerbatimCoordinates: 31TBE65DecimalLatitude: 39.31 DecimalLongitude: -0.27

http://rs.tdwg.org/dwc/terms/

ADAPTATION

TO THE

DARWIN CORE

STANDARD

GBIF provides you with the necessary

templates and documentation to adapt the

data

Template

CHECKLIST

Template

OCURRENCETemplate

EVENT

TemplateExtensions

DwCTerms

2

ADAPTATION

TO THE

DARWIN CORE

STANDARD


standard


control


Publicationof the

resource


format




content


metadata


etc.

Feedback

Requestendorsement

in GBIF



VALIDATION

AND DATA

QUALITY

3Chapman, A. D. 2005. Principles of Data Quality, version 1.0. http://www.gbif.org/resource/80509

accessible

accurate

precise

complete

consistent with other sources

relevant

comprehensive

provide a proper level of detail

be easy to read and easy to interpret

Data quality is a relative concept that depends on the use of these data.

VALIDATION

AND DATA

QUALITY

This process consists of verifying and adjusting the contents

according to the definitions and quality criteria established by

the standard.

3

• Tools for the management of scientific names (atomization, status checking tools, authors search, etc.)

• Geographic tools (visualization, coordinate checking, conversion, etc.)

• Date Processing Tools

• Open Refine• Darwin Test• Darwin Core Archive Validator

• Excel, Access, Open Office, etc.


standard


control


Publicationof the

resource


format




content


metadata


etc.

Feedback

Requestendorsement

in GBIF



The IPT (Integrated Publishing Toolkit) is a web

application developed by GBIF to facilitate the

publication of resources on biodiversity

through the network.

This tool allows the integration of the file

adapted to the Darwin Core standard and also

complete the metadata it in a very simple way.

http://www.gbif.es/ipthttp://ipt.gbif.pt/ipt/

3

ONLINE DATA

UPLOAD (IPT)

http://www.gbif.es/ipt


Access with yourcredentials

3

ONLINE DATA

UPLOAD (IPT)



standard


control


Publicationof the

resource


format




content


metadata


etc.

Feedback

Requestendorsement

in GBIF



datos.gbif.es www.gbif.org

4

PUBLICATION

IN GBIF

[email protected]@gbif.es

UNIDAD DE COORDINACIÓN GBIF.ES REAL JARDÍN BOTÁNICO-CSIC

[email protected]

publication workflow in gbif...darwin core standard darwin core (dwc) is a common language designed...

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