protomics

54
Proteomics Proteomic Analyses

Upload: hillol-sarkar

Post on 07-Apr-2016

216 views

Category:

Documents


2 download

DESCRIPTION

Hillol Sarkar

TRANSCRIPT

Page 1: Protomics

Proteomics

Proteomic Analyses

Page 2: Protomics
Page 3: Protomics
Page 4: Protomics

Microfluidics

Microfluidics is any kind of experimental and theoretical research of liquid streams (in small amounts) generated in chips comprising microsized channels, including fabrication, handling and practical use of these chips. In a broader sense, streams of gases or fluidized solids/particles in microchips are also included in the definition of microfluidics. For channels with dimensions in the sub-micrometre range, the word ‘nanofluidics’ is used.

Page 5: Protomics

Whitesides. NATURE|Vol 442|27 July 2006

Page 6: Protomics

Breslauer, Lee and Lee. Mol. BioSyst., 2006, 2, 97–112

Page 7: Protomics

The field of microfluidics has four parents: - molecular analysis: GPC, HPLC and CE - biodefense: DARPA - molecular biology genomics; hi-thruput DNA sequencing - microelectronics microelectromechanical systems (MEMS)

Page 8: Protomics

µTAS (micro total analysis system)

An integrated system that performs all steps in an analysis — that is, sampling, samplepre-treatment, sample transport, chemical reactions, analyte separation, productisolation and detection in a microfluidic chip. First defined in 1990, μTAS emphasizesthe analytical function of a microfluidic chip.

Page 9: Protomics

Lab-on-a-chip

Lab-on-a-chip is a term widely used for any kind of research with the goal of miniaturizing chemical and biological processes. It is not a well-defined scientific term. Lab-on-a-chip technologies include microfluidic chips as well as non-fluidic miniaturized systems such as sensors and arrays (the so-called biochips).

Page 10: Protomics

MiniaturizationThe fact that existing molecular assays, such as chemical binding, chromatographic extractions and electrophoretic separations, can be performed in different volumes without a difference in chemical quality (identical information content) has led to avariety of technologies of fabrications that enable reactions to be scaled-down or ‘miniaturized’. Miniaturization is most commonly aimed at particles (beads, packed columns and vesicles), capillaries, gels and fluidic chips.

Page 11: Protomics

Flow Characteristics

Convective vs. laminar flow

Page 12: Protomics

Weibel & Whitesides. Current Opinion in Chemical Biology 2006, 10:584–591

Page 13: Protomics

Breslauer, Lee and Lee. Mol. BioSyst., 2006, 2, 97–112

Page 14: Protomics
Page 15: Protomics

A microfluidic system must have a series of generic components: a method of introducing reagents and samples (probably as fluids, although ideally with the option to use powders); methods for moving these fluids around on the chip, and for combining and mixing them; and various other devices (such as detectors for most microanalytical work, and components for purification of products for systems used in synthesis).

Page 16: Protomics

MicrofabricationMicrofabrication describes ‘cleanroom’ fabrication processes for engineering solid flatsubstrates. It includes photolithography, direct-write laser (e-beam, X-ray) lithography,wet etching, reactive ion etching, film deposition (plasma, chemical vapor, sputtering) and bonding (eutectic, anodic, thermal, adhesion). It is mostly used for micro-electronic circuit fabrication and ‘lab-on-a-chip’.

Page 17: Protomics
Page 18: Protomics
Page 19: Protomics
Page 20: Protomics

Photolithography

A fabrication technique to generate small features in micrometer dimensions on microchip substrates such as silicon, glass or polymers.

Page 21: Protomics

Whitesides and Stroock. PHYSICS TODAY JUNE 2001

Page 22: Protomics

Valves, Mixers and Pumps

Page 23: Protomics

Weibel & Whitesides. Current Opinion in Chemical Biology 2006, 10:584–591

Page 24: Protomics

Whitesides and Stroock. PHYSICS TODAY JUNE 2001

Page 25: Protomics

Some Biological Applications

Page 26: Protomics

Protein crystallization

Separations coupled to mass spectrometry

High-throughput screening in drug development

Bioanalyses

Examination and manipulation of samples

consisting of a single cell or a single molecule

Synthesis of 18F-labelled organic compounds

for positron emission tomography (PET).

Page 27: Protomics

Whitesides. NATURE|Vol 442|27 July 2006

Page 28: Protomics

Weibel & Whitesides. Current Opinion in Chemical Biology 2006, 10:584–591

Page 29: Protomics

Whitesides. NATURE|Vol 442|27 July 2006

Page 30: Protomics

Dittrich and Manz. NATURE REVIEWS | DRUG DISCOVERY VOLUME 5 | 2006

Page 31: Protomics

Whitesides and Stroock. PHYSICS TODAY JUNE 2001

Page 32: Protomics

Dittrich & Manz. NATURE REVIEWS | DRUG DISCOVERY VOLUME 5 | 2006

Page 33: Protomics

Microfluidics and ESI and MALDI MS

Page 34: Protomics
Page 35: Protomics
Page 36: Protomics
Page 37: Protomics
Page 38: Protomics
Page 39: Protomics
Page 40: Protomics
Page 41: Protomics
Page 42: Protomics
Page 43: Protomics
Page 44: Protomics
Page 45: Protomics
Page 46: Protomics
Page 47: Protomics
Page 48: Protomics
Page 49: Protomics

2D Separations

Page 50: Protomics
Page 51: Protomics
Page 52: Protomics
Page 53: Protomics
Page 54: Protomics

Cancer Chip

• Target T-Cell• Blood Sample and Correction Engine• QC cloud indicators• 2015-16

Hillol [email protected]