patient -specific hyper -elastic biomechanical models for ...€¦ · between the planning ct and...

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Patient-specific hyper-elastic biomechanical models for clinical DIR confidence quantification John Neylon, Sharon Qi, Yugang Min and Anand P Santhanam Department of Radiation Oncology, University of California, Los Angeles, CA, USA References [1] Neylon, J., Qi, X., Sheng, K., Staton, R., Pukala, J., Manon, R., Low, D. A., Kupelian, P., and Santhanam, A., "A GPU based high-resolution multilevel biomechanical head and neck model for validating deformable image registration," Med Phys 42(1), 232-43 (2015). Abstract The accuracy of clinical multi-modal deformable image registration (DIR) is difficult to quantify. A framework was previously developed to validate a deformable registration algorithm (DIR) by generating patient-specific, GPU- based biomechanical models from head- and-neck (HN) patient CT scans and creating clinically realistic ground truth deformations[1]. We now aim to expand the model’s applicability to quantify DIR confidence for clinical registrations between the planning CT and daily positioning images. Fig 1. An example of the mesh lattice (b) created for a cube of elements (a). Principle stretches can be calculated directly from the 26 isotropic connections about each element. (a) (b) Hyper-Elastic Implementation Most biological tissues exhibit hyper-elastic response for larger deformations. Hyper-elasticity was implemented using a generalized Ogden material model, which allows experimentation with a variety of strain-energy functions by adjusting the parameters N and , such as Neo-Hookean and Mooney-Rivlin: = σ =1 1 + 2 + 3 3 , with 2 = σ =1 . From the mesh lattice (Fig. 1), the principle stretches (λ) about each element can be found directly. Principle Cauchy stretches can then be calculated from the partial derivative of the strain energy function with respect to the principal stretches. With principle Cauchy stress for each element, the internal force vector can be computed, and velocity can be updated directly, assuming near-linearity for small time increments. The model was integrated using a second order implicit Euler integration, employing the trapezium rule according to Heun’s method. Fig 3. (a) shows how the structures are instantiated as a systems of particle systems, each with bounding box to identify possibly collisions. (b) displays the full model. (c) applies a slight rotation of the head, and (d) introduces tumor regression of 40%. (e-f) apply extensive head rotations, displaying the robustness and stability of the model under large deformations. (a) (c) (b) Results Figure 2 illustrates how the model simulates tumor regression, displaying contours and strain map for the anatomy before and after a 10% reduction in tumor volume. Figure 3 shows preliminary results for the biomechanical model after significant posture changes applied to patient data. Posture changes were performed by controlling the skeletal anatomy, rotating the cranium atop the vertebral column. Frame by frame computations increase in computational cost compared to a linear elastic implementation, but the expansion to a multi-GPU framework should allow the model to maintain an interactive frame rate > 30 fps. Correlation between the model generated data and the observed clinical deformations are shown in figure 4. When tumor regression was also accounted for in the model, the lowest correlation of the structures analyzed was >0.9. This illustrated the model is capable of simulating deformations very close to clinically observed deformations, and validated the model's ability to ultimately generate ground-truth deformations to be used for DIR confidence quantification. Fig 5. Point cloud renderings of optical surface tracking using Kinect. (a) shows a mock treatment table with phantom. (b) shows a full treatment room with gantry, patient on table, and attendant. (a) (b) Conclusion A biomechanical modelling approach could effectively bridge the gap to facilitate multi-modal DIR, specifically between CT and MR where direct registration is not feasible. The ability to apply anatomical and physiological knowledge to the deformation could also improve the reliability of the daily deformation tracking for soft tissues, when utilizing lower quality modalities such as MVCT and CBCT. In the future, we look to incorporate real-time optical surface tracking (preliminary results in Fig. 5) to control the model and track intra-fraction motion during treatment. Matching Daily Observed Anatomy Daily imaging modalities (CBCT, MVCT) typically suffer from poor image quality, or completely different tissue response (MR), making intensity based registration problematic. The previously developed model can be deformed to match the observed daily anatomy and used to create a ground truth DVF with a corresponding kV-quality simulated CT image set. DIR performance can then be quantified by comparing the DIR and model generated DVFs, producing a confidence margin for the clinical registration. To validate the model deformations in our previous work, registration was performed between the planning CT and final weekly kVCT of clinical patient data. The DVF for the bony anatomy was applied to the model created from the planning CT, after which the soft tissues were allowed to deform according to the elastic material model. The correlation was then calculated between the model anatomy and observed target anatomy. This methodology will be adapted to reproduce the observed posture and output high quality simulated CT data with a known DVF. Fig 4. (a) shows the correlation of model generated data sets with induced soft tissue deformation from posture changes applied to bony anatomy. (b) shows the correlation after the inclusion of tumor regression to the model. (a) (b) Fig 2. A 2D snapshot of the model at rest state (a) with tumor delineated as red and its deformed state representing 10% tumor volume reduction is shown in (b). The corresponding color-coded strain maps for these states are shown in (c) and (d). (a) (c) (b) (d) CONTACT NAME John Neylon: XXXX@XXX POSTER P6353 CATEGORY: MEDICAL IMAGING - MI15

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Page 1: Patient -specific hyper -elastic biomechanical models for ...€¦ · between the planning CT and daily positioning images . Fig 1. An example of the mesh lattice (b) created for

Patient-specific hyper-elastic biomechanical models for clinical DIR confidence quantification

John Neylon, Sharon Qi, Yugang Min and Anand P SanthanamDepartment of Radiation Oncology, University of California, Los Angeles, CA, USA

References[1] Neylon, J., Qi, X., Sheng, K., Staton, R., Pukala,

J., Manon, R., Low, D. A., Kupelian, P., andSanthanam, A., "A GPU based high-resolutionmultilevel biomechanical head and neck modelfor validating deformable image registration,"Med Phys 42(1), 232-43 (2015).

AbstractThe accuracy of clinical multi-modaldeformable image registration (DIR) isdifficult to quantify. A framework waspreviously developed to validate adeformable registration algorithm (DIR)by generating patient-specific, GPU-based biomechanical models from head-and-neck (HN) patient CT scans andcreating clinically realistic ground truthdeformations[1]. We now aim to expandthe model’s applicability to quantify DIRconfidence for clinical registrationsbetween the planning CT and dailypositioning images. Fig 1. An example of

the mesh lattice (b)created for a cube ofelements (a).Principle stretchescan be calculateddirectly from the 26isotropic connectionsabout each element.

(a)

(b)

Hyper-Elastic ImplementationMost biological tissues exhibit hyper-elastic response forlarger deformations. Hyper-elasticity was implementedusing a generalized Ogden material model, which allowsexperimentation with a variety of strain-energyfunctions by adjusting the parameters N and 𝛼𝛼, such asNeo-Hookean and Mooney-Rivlin:

𝑊𝑊 = σ𝑝𝑝=1𝑁𝑁 𝜇𝜇𝑝𝑝𝛼𝛼𝑝𝑝

𝜆𝜆1𝛼𝛼𝑝𝑝 + 𝜆𝜆2

𝛼𝛼𝑝𝑝 + 𝜆𝜆3𝛼𝛼𝑝𝑝 − 3 , with 2𝜇𝜇 = σ𝑝𝑝=1𝑁𝑁 𝜇𝜇𝑝𝑝𝛼𝛼𝑝𝑝.

From the mesh lattice (Fig. 1), the principle stretches(λ) about each element can be found directly. PrincipleCauchy stretches can then be calculated from the partialderivative of the strain energy function with respect tothe principal stretches. With principle Cauchy stress foreach element, the internal force vector can becomputed, and velocity can be updated directly,assuming near-linearity for small time increments. Themodel was integrated using a second order implicit Eulerintegration, employing the trapezium rule according toHeun’s method.

Fig 3. (a) shows how the structures are instantiated as a systems of particle systems, each withbounding box to identify possibly collisions. (b) displays the full model. (c) applies a slightrotation of the head, and (d) introduces tumor regression of 40%. (e-f) apply extensive headrotations, displaying the robustness and stability of the model under large deformations.

(a) (c)(b)

ResultsFigure 2 illustrates how the model simulates tumor regression, displaying contoursand strain map for the anatomy before and after a 10% reduction in tumor volume.Figure 3 shows preliminary results for the biomechanical model after significantposture changes applied to patient data. Posture changes were performed bycontrolling the skeletal anatomy, rotating the cranium atop the vertebral column.Frame by frame computations increase in computational cost compared to a linearelastic implementation, but the expansion to a multi-GPU framework should allowthe model to maintain an interactive frame rate > 30 fps.Correlation between the model generated data and the observed clinicaldeformations are shown in figure 4. When tumor regression was also accounted for inthe model, the lowest correlation of the structures analyzed was >0.9. Thisillustrated the model is capable of simulating deformations very close to clinicallyobserved deformations, and validated the model's ability to ultimately generateground-truth deformations to be used for DIR confidence quantification.

Fig 5. Point cloudrenderings of opticalsurface tracking usingKinect. (a) shows a mocktreatment table withphantom. (b) shows a fulltreatment room withgantry, patient on table,and attendant.

(a)

(b)

ConclusionA biomechanical modelling approach could effectively bridge the gap tofacilitate multi-modal DIR, specifically between CT and MR where directregistration is not feasible. The ability to apply anatomical andphysiological knowledge to the deformation could also improve thereliability of the daily deformation tracking for soft tissues, when utilizinglower quality modalities such as MVCT and CBCT.In the future, we look to incorporate real-time optical surface tracking(preliminary results in Fig. 5) to control the model and track intra-fractionmotion during treatment.

Matching Daily Observed AnatomyDaily imaging modalities (CBCT, MVCT) typically suffer from poor image quality, orcompletely different tissue response (MR), making intensity based registrationproblematic. The previously developed model can be deformed to match theobserved daily anatomy and used to create a ground truth DVF with acorresponding kV-quality simulated CT image set. DIR performance can then bequantified by comparing the DIR and model generated DVFs, producing aconfidence margin for the clinical registration.To validate the model deformations in our previous work, registration wasperformed between the planning CT and final weekly kVCT of clinical patientdata. The DVF for the bony anatomy was applied to the model created from theplanning CT, after which the soft tissues were allowed to deform according to theelastic material model. The correlation was then calculated between the modelanatomy and observed target anatomy. This methodology will be adapted toreproduce the observed posture and output high quality simulated CT data with aknown DVF.

Fig 4. (a) shows the correlation of model generateddata sets with induced soft tissue deformation fromposture changes applied to bony anatomy. (b) showsthe correlation after the inclusion of tumor regressionto the model.

(a)

(b)

Fig 2. A 2D snapshot of the model at rest state(a) with tumor delineated as red and itsdeformed state representing 10% tumor volumereduction is shown in (b). The correspondingcolor-coded strain maps for these states areshown in (c) and (d).

(a) (c)

(b) (d)

contact name

John Neylon: XXXX@XXXPoster

P6353

category: medical imaging - mi15