organic chemistry: structure and nomenclature
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Organic chemistry for A-level Structure and NomenclatureTRANSCRIPT
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Organic Chemistry IStructure and Nomenclature
Indra Yudhipratama
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Outline
Representation of organic molecules Nomenclature of organic chemistry Structure of hydrocarbons (alkanes, alkenes,
and alkynes) and aromatic benzene. Isomerism
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Representation of the Organic MoleculesHow to draw it?
Mainly there are 4 ways to draw organic molecules
CH3CH2CH2CH3
3D formula
Skeletal FormulaeStructural Formulae
CH3
H5C2
H
H
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Representation of the Organic molecules
In this course, you are expected to understand the organic molecules in skeletal form.
How to draw skeletal form? Draw H attached to O, N, S (or other elements except C) Do not draw H attached to C (unless it is important) Use uniform bond lengths (give your best effort) Use uniform bond angles (give your best effort)
120o for single bond and double bonds 180o for triple bonds
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Representation of the Organic molecules
Example:
H2N
O
OH
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Why skeletal formula?
CH
CH
CH
N
CHCH2
CH2
CH2
CH3
CO O
CH3
O
C
O
C
CH
CH
CH
CH
CH
C
C
C
N
CC
C
C
C
CO O
C
O
C
O
C
C
C
C
C
CHH
H
HH
H
HH
H
H
H
HH
H
H
H
H
H
H
H
H
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Why skeletal formula?
Just simply makes your life easier
With this structure you can easily spot the functional group and reaction centre
N
O O
O
O
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Nomenclature Select the longest continuous carbon chain.
This determines the base name.
Consider each branch and name similarly except change the name from –ane to –yl.
Number the C atoms so that substituents have the lowest possible number.
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NomenclatureName each substituent according to its identity and the number of the C atom to which it is attached.
Use di, tri, tetra as appropriate.
Separate numbers from one another by commas.
List substituents alphabetically by name.
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Functional groupsWhat is functional group?
An atom or group of atoms which gives rise to an homologous series
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Nomenclature example
4-propylcyclohex-2-en-1-one
O
Cl
O
O
O
cyclohexyl 4-methylhex-2-ynoate
1-chloropropan-2-one
3-ethyl-4,5-dimethyloctane
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However, More complicated organic molecule sometimes is known
by its trivial name NOT IUPAC systematic name
N
O O
O
O
methyl 8-methyl-3-[(phenylcarbonyl)oxy]-8-azabicyclo[3.2.1]octane-2-carboxylateCocaine
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And a bit messy now …
Calicheamicin 𝛾1S-[(2R,3S,4S,6S)-6-({[(2R,3S,4S,5R,6R)-5-{[(2S,4S,5S)-5-(Ethylamino)-4-methoxytetrahydro-2H-pyran-2-yl]oxy}-4-hydroxy-6-{[(2S,5Z,9S,13E)-9-hydroxy-12-[(methoxycarbonyl)amino]-13-[2-(methyltrisulfanyl) ethylidene]-11-oxobicyclo[7.3.1]trideca-1(12),5-diene-3,7-diyn-2-yl]oxy}-2-methyltetrahydro-2H-pyran-3-yl]amino}oxy)-4-hydroxy-2-methyltetrahydro-2H-pyran-3-yl] 4-{[(2S,3R,4R,5S,6S)-3,5-dihydroxy-4-me thoxy-6-methyltetrahydro-2H-pyran-2-yl]oxy}-3-iodo-5,6-dimethoxy-2-methylbenzenecarbothioate
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Structure of HydrocarbonsAlkanes (e.g. Ethane)
The carbon-carbon bond is made from overlap of two sp3 orbitals to form
a s bond The molecule is
approximately tetrahedral around each
carbon
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Structure of HydrocarbonsAlkenes (e.g. Ethenes) The geometry around each carbon is called trigonal planar The three sp2 hybridized orbitals come from mixing one s and
two p orbitals One p orbital is left unhybridised
Restricted rotation due to overlap on p orbitals (π bonding).
Result: Cis/trans isomerism
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Benzene (delocalisation Structure)
Each carbon has p orbital that forms π bonding The π bonds not only with the adjacent carbon, but with all carbon π electrons are delocalised give delocalisation structure Delocalisation can takes place whenever two double bonds are
separated by single bond or a lone pair is separated from a double bond by one single bond
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Delocalisation structure
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Structure of Hydrocarbon
Alkynes (e.g. ethyne) The arrangement of atoms around each carbon is linear with
bond angles 180o
The carbon in ethyne is sp hybridized One s and one p orbital are mixed to form two sp orbitals
Two p orbitals are left unhybridized The triple bond consists of one s and two p bonds
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Isomerism
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Structural Isomer Same chemical formula, but behave differently The
structure is different. E.g. C4H10
It can be drawn in two ways:
Quick Review:
Name all the isomers of C4H10.
CH3
CH3
CH3
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Structural Isomer E.g. A organic molecule has formula C4H10O. It
has isomers with alcohol FG:
Quick Review:
Draw the other isomer with alcohol FG
and name it.
OHOH
C 4H 10OC 4H 10O
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Structural Isomer C4H10O also can be drawn with another functional
group.
Because they have different functional, so it’s called the functional group isomerism
Quick Review:
Name the functional group of those molecules above.
OCH3 CH3O
CH3CH3
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Stereoisomerism
Related to the geometrical/spatial arrangement Two types of stereoisomerism:
Cis/trans isomerism occurs mainly at alkenes
Optical isomerism Chiral centre.
CH3
CH3
CH3 CH3
trans-but-2-ene cis-but-2-ene
COOH
OH
CH3H
HOOC
OH
CH3H
(2S)-2-hydroxypropanoic acid (2R)-2-hydroxypropanoic acid
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Cis-trans isomers Cis-trans isomers are the result of restricted rotation about
double bonds These isomers have the same connectivity of atoms and
differ only in the arrangement of atoms in space One molecule is designated cis (groups on same side) and
the other is trans (groups on opposite side)
Cis-trans isomerism is not possible if one carbon of the double bond has two identical groups
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Optical isomerism What is Chiral Centre?
A Carbon atom in a molecule attached to four different groups.
Chiral centre Chiral molecules
Cannot be superimposed, but are mirror images each others
COOH
OH
CH3H
HOOC
OH
CH3H
(2S)-2-hydroxypropanoic acid (2R)-2-hydroxypropanoic acid
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Quick Review
9701/w11/p12
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9701/w11/p43/5c