odip: establishing and operating an ocean data interoperability platform
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ODIP: Establishing and operating an ocean data interoperability platform. Helen Glaves (NERC- BGS), Dick Schaap (MARIS), Robert Arko (LDEO) and Roger Proctor (IMOS). Paradigm shift from traditional discipline based marine research - PowerPoint PPT PresentationTRANSCRIPT
Helen Glaves (NERC- BGS), Dick Schaap (MARIS), Robert Arko (LDEO) and Roger Proctor (IMOS)
• Paradigm shift from traditional discipline based marine research
• Multidisciplinary ecosystem level approach: promoted in Europe by Marine Strategy Framework directive MSFD (2008) and Marine Knowledge 2020
• Requires large amounts of good quality, interoperable data from a range of disciplines and organisations
Barriers to re-use of marine dataUse of different
FormatsStandardsBest practiceCo-ordinate systemsTechnologies
National and organisational data access policies
3
E-infrastructuresA number of regional initiatives
have made significant progress in addressing these barriers by developing marine data management infrastructures
Development of these infrastructures is being promoted and supported by international organizations such as UNESCO‘s Intergovernmental Oceanographic Commission (IOC)
USA
Europe
Australia
Ocean Data Interoperability Platform
EU-US-Australia collaborative project
Grant Number: 312492
Call: FP7-INFRASTRUCTURES-2012-1-INFSOActivity: INFRA-2012-3.2: International co-operation with the USA
on common e-infrastructure for scientific data
Start date: 1 October 2012
Duration: 36 months
Funded in parallel by European Commission, National Science Foundation (NSF) and Australian Government
Europe: 10 EU funded partners: 6 countriesNERC-BGS/BODC, MARIS, OGS, IFREMER, HCMR, ENEA, ULG, CNR, RBINS-MUMM, TNO
ODIP partners
USA: NSF funded partners (supplement to existing R2R project)
San Diego Supercomputer Center (SDSC)
Scripps Institution of Oceanography (SIO)
Woods Hole Oceanographic Institute (WHOI)
Lamont-Doherty Earth Observatory (LDEO)
Florida State University: Center for Ocean-Atmospheric Prediction Studies (FSU)
Australia
University of Tasmania (IMOS)
InternationalUNESCO IOC-IODE
Associate partnersEurope
Alfred Wegener Institute for Polar Research (AWI)MARUM
USA
NOAA US-IOOS, NOAA US-NODC, NOAA NGDC
UNIDATA
AustraliaAustralian National Data Service (ANDS)Geoscience Australia (GA)CSIRO
ODIP: Objectives To establish an EU/USA/Australia/IOC-IODE
co-ordination platform to facilitate the interoperability of ocean and marine data management infrastructures
To demonstrate this co-ordination through the development of several joint prototype interoperability solutions that allows effective sharing of marine and ocean data across scientific domains, organisations and national boundaries
Development of a common approach to marine data management that can be extended to other regions and organisations beyond the original project consortium
Overall strategyDevelopment of a collaboration platform to facilitate organised dialogue between key organisations in Europe, USA and Australia involved with marine data management. Achieved by:
Creating inventories of existing standards and policies
Publication of these existing standards and best practice through ODIP portal and Research Data Alliance
Regular joint workshops to develop interoperability solutions and/or agree on common standards
Development of prototypes for testing and evaluating potential interoperability solutions
Dissemination /promotion of ODIP activities to encourage wider participation and adoption of the outcomes of the project
Progress to date……….1st ODIP workshop: Ostende, Belgium (February 2013)
Addressed 6 discussion topicsResulted in an extensive list of actionsFormulated into three prototype interoperability solution
development tasks
2nd ODIP workshop: San Diego, USA (December 2013)Addressed three discussion topics and implementation plans
for the prototype development tasks
Initiation of 3 prototype interoperability solution development tasks
ODIP 1: objective
Establishing interoperability between the SeaDataNet, IMOS and NODC data discovery and access services using brokering services
Lead by European partners via SeaDataNet
Initially addressing use of brokers at the metadata level
Progress to data access services (possibly including authentication and authorisation systems)
ODIP 1: the planmake use of the (Euro)GEOSS Brokerage harmonise the
3 regional services to a common level
SeaDataNet (Europe)
IMOS (Australia)
NODC (USA)
start at metadata level, but progress to data access, including providing solutions for possible AAA systems
use the broker to facilitate access to data from the regional services by the GEOSS and Ocean Data Portals
ODIP 2: objectiveODIP 2: Establishing interoperability between cruise
summary reporting systems in Europe, the USA and Australia
Lead by Rolling Deck to Repository (R2R) partners (USA)Improvement of delivery and exchange of cruise
summary information through the use of common formats and vocabularies
Use of GeoNetWorks for routine harvesting of cruise data for delivery via the Partnership for Observation of Global Oceans (POGO) portal
ODIP 2: the planPublish ISO Cruise Summary Reports at regional nodes:
Marine National Facility (Australia)
SeaDataNet (Europe)
R2R (USA)
Deploy GeoNetwork catalogues at regional nodes providing both a GUI (web portal) and API (CSW service)
Harvest GeoNetwork nodes into POGO global catalogue
ODIP 3: objective
Establishment of a prototype for a Sensor Observation Service (SOS) for selected sensors installed on vessels and in real-time monitoring systems using sensor web enablement (SWE)
Lead by AODN (Australia)
regional initiatives progress towards the adoption of SWE allowing direct standardised access to the data from operational sensor systems
ODIP 3: the planestablish a collaboration tool (Github)
compile inventory of SOS services and their endpoints
compile inventory of instrument SensorML records & O&M structures
compile inventory of vocab and registry services
Working groups to assess SOS performance
propose templates for SensorML/StarFl and O&M profiles
examine vocabulary services and potential mappings
Set-up a test bed
Establish a collaboration toolGithub: https://github.com/aodn/ODIP
compile inventory of SOS services and their endpointscompile inventory of instrument SensorML records & O&M structurescompile inventory of vocab and registry servicesWorking groups to
assess SOS performancepropose templates for SensorML/StarFl and O&M profilesexamine vocab services and potential mappings
Set up testbed
ODIP 3: the plan
StarFL OGC discussion document
*FL Starfish Fungus Language for Sensor Descriptionhttp://portal.opengeospatial.org/files/?artifact_id=44438
Testbed - Progress so far… (Scott Bainbridge)
Set up two public open SOS servers, one running V4.0 of the 52North SOS server, the other running V3.6;
Both servers are fully open, that is anyone can undertake the full SOS set of requests including registering sensors and adding data;
Currently data from the IMOS FAIMMS Sensor Network is going into the servers, more data can be added to look at load testing if need be;
Both servers form an ideal platform for client development and service chaining experiments.
SOS v4.0
Base Address: http://115.146.93.169:8080/IMOS-SOS/ XML Address: http://115.146.93.169:8080/IMOS-SOS/sos/pox/ So far two Features of Interest:
IMOS/DAVIES/SF1 = Sensor Float 1 at Davies ReefIMOS/HERON/RP8 = Relay Pole 8 at Heron Island
With two Parameters:Water temperature (Deg. C.)Depth (m)
SOS v3.6Base Address: http://130.220.209.177:8080/IMOS-SOS-36/ XML Address: http://130.220.209.177:8080/IMOS-SOS-36/sos/ Will be set up with the same Features of Interest and Parameters
as the V4 server;Supports both SOS V1 and SOS V2.
Activities underwaySeaDataNet (Jordi Sorribas)
SensorML_profiles_for_specific_
marine_observations_data-final.pdf
Example:
RONIMAR program station located in Cadiz with a tide gauge.
SensorML (using the SensorML 2.0 schema)
and O&M files are online:
http://www.utm.csic.es/SensorWeb/Descriptions
Activities underwayCNR (Alessandro Oggioni, Mauro Bastianini, Cristiano Fugazza)VMs with 52°North SOS implementations:
a) version 3.2 linked to some data streams from the Venice Acqua Alta Towerb) version 4.0 linked to some data streams from the LTER ecological data (also for 5 marine stations)c) version 4.0 linked to the tidal network stations
Examples of SensorML for version 3.x and 4.0:a) weather stations; b) vessel sensors; c) probe profile (eg CTD)
An inventory of SOS: collected 420 SOS endpoints (site to share this list?)
A SOS client to upload metadata (SensorML format) and Observations, visualize (also in realtime), and download data from the sensors
‘Starter’ kit
Activities underwayOGS (Elena Partescano, Alessandra Giorgetti)Testing a SOS service linked to the meteo-
oceanographic MAMBO1 buoy (in the North Adriatic Sea) and the observatory site E2M3A (in the South Adriatic Sea)
Installed a OGC 52° North Sensor Observation Service 3.5 (http://nodc.ogs.trieste.it/SOS/sos) and a SOSClient (http://nodc.ogs.trieste.it/SOSclient)
For testing: MAMBO1 - all CTD and pH sensors – and E2M3A - pH sensor - (pH data for both buoys, stored using O&M format). The SensorML 1.0 are compiled using, where possible, the SeaDataNet vocabularies and EDIOS catalog.
Activities underway
AWI (Hans Pfeiffenberger, Ana Macario)Research vessel SOS
SensorML and O&M SeaDataNet profiles are being adopted – lots of work! AWI hands-on experience will be communicated in next ODIP workshop AWI is also keen on testing StarFL SensorML and O&M will be „opened“ for RV Polarstern and RV Heincke
during Q1/2015
Dynamic vessel trackingOn-going efforts towards integration in EUROFLEETS 2 prototype
Cooperation with 52North (SOS 4.0) is plannedOptimization of current near real time services
Activities underway
Ifremer (Thomas Loubrieu, Mickael Treguer)Made some progress on oceanotron which now implements
SOS protocol. Output is encoded in XML, JSON, and netCDF. It works for online results or off-line (or asynchronous) results for big volumes.
Working together with Jordi Sorribas on templates of sensorML and O&M and shared core rules on them (on vocabulary's references,unique identifiers, contacts, ...)
Doing some experimentation with 52north.
Activities underwayUS-IOOS (Derrick Snowden)All IOOS regions now have functioning IOOS milestone 1.0 SOS
services in place.Strongly urging to adopt the 52North 4.0 branch as the basis for
ODIP. Inventory of SOS services and endpoints - https
://www.ngdc.noaa.gov/docucomp/collectionSource/list?recordSetId=&componentId=&serviceType=SOS&serviceStatus=&serviceUrl=&search=List+Collection+Sources
Inventory of sensorML and O&M structures - https://code.google.com/p/ioostech/source/browse/#svn%2Ftrunk%2Ftemplates%2FMilestone1.0
Vocab and registry services – http://mmisw.org/ont/ioos
Activities underway
Two test instances of 52N and ncSOS (four services - latest stable build and continuous integration build)52N: http://ioossos.axiomalaska.com/ ncSOS: https://github.com/asascience-open/ncSOS/wiki#wiki-quick-links Test data sets for further development: For ncsos - https://github.com/asascience-open/ncSOS/blob/master/resources/datasets.zip For IOOS 52N - http://ioossos.axiomalaska.com/testdata.html An early version of a python client for the IOOS SOS profile (and several other web service interfaces): https://github.com/asascience-open/pyoos
Activities underway
BODC (Justin Buck)Planning to implement a prototype ncSOS system for glider data
at BODC (based on IOOS but need to integrate access control).
What next?Use github repository to
compile inventory of SOS services and their endpointscompile inventory of instrument SensorML records & O&M
structurescompile inventory of vocab and registry services
Initiate Working groups toassess SOS performance
Justin Buck, Scott Bainbridgepropose templates for SensorML/StarFl and O&M profiles
Paolo Diviacco, Irina Bastrakova, Thomas Loubrieu*, Cristiano Fugazza*, Hans Pfeiffenberger*
examine vocab services and potential mappings Kim Finney / Sebastien Mancini, Cristiano Fugazza
Add more SOS to testbed, add more datasets
In time for ODIP#3 workshopWhen? 4-8 August 2014Where? Australian Institute of Marine Science,
Townsville, Australia
Townsville will be warm and sunny in August, max around 26C., min around 14CParticipation: http://doodle.com/ziazg939u7wbypkw
Accommodation: IBIS TOWNSVILLE HOTEL (“AIMS0814”)
Thank you!
Dissemination of ODIP outcomesProject website
Social media
International conferences
Other related initiatives
Ocean Data Portal (ODP)
Research Data Alliance
Belmont Forum
www.odip.eu
Github repositoryUsers requesting to be registered for Github Paulo Diviacco - [email protected] Thomas Loubrieu (tloubrieu) - [email protected] Mickael Treguer (mtreguer) - [email protected] Kim Finney - [email protected] Bainbridge - [email protected] Oggioni - [email protected] Bastianini - [email protected] Fugazza - [email protected] Buck - [email protected] Macario - [email protected] Snowden - [email protected] Sorribas - [email protected] Lowe - [email protected] Partescano - [email protected]