npsg data exchange where we are today and what we need david m. rapoport, md nyu school of medicine...
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![Page 1: NPSG Data Exchange Where We Are Today and What We Need David M. Rapoport, MD NYU School of Medicine Philadelphia January 27, 2006](https://reader036.vdocuments.us/reader036/viewer/2022062517/56649ee05503460f94bf00c5/html5/thumbnails/1.jpg)
NPSG Data ExchangeWhere We Are Today and What We Need
David M. Rapoport, MDNYU School of Medicine
PhiladelphiaJanuary 27, 2006
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What is an Electronic NPSG?
Raw Data
Events (“scoring”)
Patient Information and ID
Associated Data (video, tech notes, etc)
Representations of Data(Windows)
Data are usually collected to, and displayed from, a proprietary file format.
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Benefits of Standardized Electronic NPSG File Format
Multicenter StudiesCentralized reading from multiple acquisition formats
Data DisseminationSharing of scored data and completed data sets (eg SHHS)Additional processing of previously collected data
Remote Access, eg via internetDependent on transmission and compression.
ArchivingOld records/migration of data to new systems or new analyses
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Record NPSG in Proprietary Format
Convert toStandard Format
Convert to AlternateProprietary Format
Data Transmission
Display Score/Process
Report
Score/ProcessReport
Data Storage
Display
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Why Can’t We Do This Now?
Most systems use proprietary data format for raw and scored data
Standards for data exchange exist (eg EDF), but….
Often used as “intermediate” data format for RAW DATA ONLY
Rules for using the “standard” are frequently incompletely implemented
Standards for event and scored data incompletely or not defined
New solution for each new problem or advance in the field (lack of extensibility)
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Examples of Issues in Implementing EDF
Dates 02-05-05 February 5, 2005 or May 2, 2005?
Sampling frequency – non integer causes “clock drift” if rounded
Calibration information often lost
Integer “wraparound” – maximum values that can be stored are
-32,768 to +32767
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Loss of calibration
255
0
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Example of Wrap-around
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Standardization Targets
Standardized file format for data
Standardization of what a program utilizing the “standard” data can/must do
Read data
Write file or data
Display data (including processed data)
Manipulate data
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Components of an Electronic NPSGRaw Data
Time series of data points
Information about what data is, sampling freq, calibration, display, etc
Conventions on storage
Parallel or multiplexed data points for multiple channels
Data compression
Data integrity (watermarking)
Examples: EDF, SDF, ASCII, proprietary binary formats
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Components of an Electronic NPSGEvents (eg apneas, sleep stages)
Several Categories
No fixed set of events
Linkages between events
Examples: EDF plus, ASCII, proprietary binary formats
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Event “Categories” in Electronic NPSG
Discrete Events (eg scoring that occurs intermittently or not at all)
Examples include apnea, hypopnea, arousal
Continuous Descriptors (eg – scoring that always has a value)
Changes occuring at Fixed Intervals (eg R&K epochs of sleep staging)
Changes occuring at Variable intervals (eg position)
Linkages between events – can either change an event or only qualify it
Examples include different definitions of hypopnea (with arousal or desat)
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Development of a New NPSG Standard Format
Perspectives and Input needed
Research
Clinical Practice
NIH (Regulatory)
Industry
Procedures to disseminate/implement a “standard”