neuropad: an identified neuron database for insect segmental ganglia christopher comer john dowd

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Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

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Page 1: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

Neuropad: An Identified Neuron Database for Insect Segmental

Ganglia

Christopher Comer John Dowd

Page 2: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

Motivations:

• Store anatomical records*

(with some functional data)

• Facilitate comparative studies

*experimental observations, but also canonical descriptions of cells

Page 3: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

Background:

1.

2.Workshop1994Jacobs et al.

Target: Orthopteroid Insects

Page 4: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

Example of record for classic insect neuron DCMD (from prototype version of Neuropad)

Page 5: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

Search records by:

• Genus or species

• Name or ID of cell

• Sensory modalities

• Anatomical properties

Soma position

Decussation

Neurite pattern (similarity)

Page 6: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

How schematic anatomical summary is entered: 1. specify soma location within ganglionic grid

Page 7: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

How schematic anatomical summary is entered: 2a. Point and click to render main neurites

Page 8: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

How schematic anatomical summary is entered: 2b. Point and click to render main neurites

Page 9: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

How schematic anatomical summary is entered: 2c. Point and click to finish rendering neurites

Page 10: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

Finished Product (Sa = supraesophageal ganglion (brain), Sb = subesophageal ganglion, T1 = first thoracic ganglion etc. P, D, T = proto- deutero- and trito-cerebrum)

Page 11: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

Example of record in current version of Neuropad:Has schematic anatomy and hi-res version from published description

Page 12: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

Using Using NeuropadNeuropad schematics to summarize DCMD schematics to summarize DCMD Anatomy Anatomy (and suggest hypotheses about functional (and suggest hypotheses about functional correlations):correlations):

Page 13: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

Perplaneta Locusta GryllusPerplaneta Locusta Gryllus

Result from comparison: Cerebral anatomy of Result from comparison: Cerebral anatomy of cricket DCMD similar to cockroach, cricket DCMD similar to cockroach, notnot locust: locust: (data from Leung and Comer)(data from Leung and Comer)

Page 14: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd

Ultimately….. Design of Neuron Databases

should allow us to:

• Enter experimental observations easily

• Test ideas on circuit design

• Understand the evolution of neuronal circuits

Page 15: Neuropad: An Identified Neuron Database for Insect Segmental Ganglia Christopher Comer John Dowd