network enabled research - the role of open source and open thinking

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http://www.flickr.com/photos/small_realm/6898449633 CC BY Network Ready Research The role of Open Source and Open Thinking BOSC - Berlin - 19 July 2013 Cameron Neylon

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Keynote talk given at the Bioinformatics Open Source Conference at the ISMB in Berlin on 19 July 2013. Discussed from the perspective of Open Source and open definitions how to think about networks and the potential for discontinuities and phase transitions as places where the expansion of networks can lead to significant changes in scientific capacity.

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Page 1: Network Enabled Research - The role of open source and open thinking

http://www.flickr.com/photos/small_realm/6898449633 CC BY

Network Ready ResearchThe role of Open Source and Open Thinking

BOSC - Berlin - 19 July 2013Cameron Neylon

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You are free to:

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Networks.

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http://mentionmapp.com

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Many networks

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http://www.flickr.com/photos/47691521@N07/6082519811/ CC BY-SA

What can we...

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Here’s another...

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27 January 2009

http://gowers.wordpress.com/

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27 January 2009

February 1 2009

http://gowers.wordpress.com/

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“It is not the case that the aim of the project is [...to solve the problem...] I think that the chances of success even for this more modest aim are substantially less than 100%.”Tim Gowershttp://gowers.wordpress.com/2009/02/01/a-combinatorial-approach-to-density-hales-jewett/

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27 January 2009

February 1 2009

March 10 2009

http://gowers.wordpress.com/

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“It feels as though this is to normal research as driving is to pushing a car.”Tim Gowershttp://gowers.wordpress.com/2009/02/01/questions-of-procedure/#comment-1701

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Successful open projects...

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...exploit order-disorder transitions

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...or...

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...network transitions can be exploited...

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...by adopting open approaches

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“Open”isWhat

about anyway?

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“Open”doesWhat

mean?

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http://www.flickr.com/photos/yourdon/3088582622

...sharing what we already create

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The license must not restrict anyone from making use of the program in a specific field of endeavor.Open Source Definition - http://opensource.org/osd

The license must not discriminate against any person or group of persons..Open Definition - http://opendefinition.org/okd

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By Open Access we mean...permitting any users to read, download, copy, distribute,

print, search, or link to the full texts of these articles, crawl them for indexing, pass them as data to software, or use them for any other lawful purpose, without financial, legal, or

technical barriers other than those inseparable from gaining access to the internet itself.

Budapest Open Access Initiativehttp://www.budapestopenaccessinitiative.org/read

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http://www.flickr.com/photos/leesean/5114553800 CC BY-SA

For any

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“Open”does beingWhat

mean?

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My work can help someone...

http://www.flickr.com/photos/mararie/3313582639/ CC-BY-SA

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P = InterestFriction

x N (help someone)

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P = InterestFriction

x N (help someone)

Proportion that could use your work

Usability of your work

Number of people you can

reach

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Someone out there can help...

http://www.flickr.com/photos/mararie/3313582639/ CC-BY-SA

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P = InterestFriction

x N (getting help)

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P = InterestFriction

x N (getting help)

Proportion that create work that you can use

Ease of contributing

Number of people you can

reach

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P = InterestFriction

x N (getting help)

Fixed

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P = InterestFriction

x N (getting help)

As small as possible...

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P = InterestFriction

x N (getting help)

As small as possible...

As large as possible...

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Being open is acting to reduce friction and to maximize N...

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...for both outgoing and incoming information...

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http://www.flickr.com/photos/nanagyei/6744708487 CC BY

Enable forking..

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http://www.flickr.com/photos/dno1967b/8531643597 CC BY

...and merging

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What tools...?

http://www.flickr.com/photos/booleansplit/3055314411 CC BY

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Repositories...

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...documentation.

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...VMs...

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...continuous integration...

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...unit tests...

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...issue trackers...

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...cloud.

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http://www.flickr.com/photos/drachmann/327122302 CC-BY-SA

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http://www.flickr.com/photos/robbie73/3387189144 CC-BY-SA

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http://www.flickr.com/photos/mukumbura/4052671706 CC-BY-SA

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http://www.flickr.com/photos/marfis75/2459534903 CC BY-SA

Different audiences...

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http://www.flickr.com/photos/pagedooley/5000489105 CC BY

Different audiences...

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http://www.flickr.com/photos/9610484@N05/1120115961

...different supports.

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http://www.flickr.com/photos/soldiersmediacenter/4311667534 CC BY

...different supports.

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http://www.flickr.com/photos/celebdu/291322346 CC BY

But how do you support the

unexpected...?

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http://www.flickr.com/photos/drachmann/327122302 CC-BY-SA

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http://www.flickr.com/photos/robbie73/3387189144 CC-BY-SA

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http://www.flickr.com/photos/mukumbura/4052671706 CC-BY-SA

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If it’s near zero cost...

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http://www.flickr.com/photos/gaelx/6340466785 CC BY-SA

...and reduces

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...or increases

http://www.flickr.com/photos/jennycu/4527765710 CC BY

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...then do it.

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If it costs...

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http://www.flickr.com/photos/pagedooley/5000489105 CC BY

...but helps a known audience

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http://www.flickr.com/photos/gaelx/6340466785 CC BY-SA

...and reduces

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...or increases

http://www.flickr.com/photos/jennycu/4527765710 CC BY

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...for all...

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...then do it.

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Can move it upstream...

http://flickr.com/photos/jason_burmeister/2053139930 CC-BY

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...use shared platforms

http://www.flickr.com/photos/37984062@N03/3495256118 CC-BY-SA

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http://www.flickr.com/photos/mdpettitt/3455884055 CC-BY

...share the load

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...then...

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http://www.flickr.com/photos/mecklenburg/5026128169 CC BY-SA

Something is missing....

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http://www.flickr.com/photos/beccapeterson/5338013478 CC BY-ND

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No-one ever got...

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http://www.flickr.com/photos/natematias/310642831 CC-BY-SA

one of these...

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...for infrastructure

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Hack the incentives system...?

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More of the same...?

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http://www.flickr.com/photos/levork/5026708729 CC BY-SA

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http://www.flickr.com/photos/yakobusan/2436481628 CC-BY

Community architecture...

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...open in the foundations

http://www.flickr.com/photos/56380734@N05/7852142720 CC-BY-SA

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Reduce friction...

http://www.flickr.com/photos/g_kat26/3535474947 CC-BY-SA

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...and support sharing...

http://www.flickr.com/photos/cogdog/5910598311 CC BY-SA

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http://www.flickr.com/photos/dno1967b/6295812307 CC BY

...but also merging

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Where are the opportunities?

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Points of nucleation?

http://www.flickr.com/photos/vitroids/1527109907 CC BY

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Where are we close to a phase transition?

http://www.flickr.com/photos/mararie/2185487355 CC BY-SA

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That’d be a problem for people who know networks...

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@cameronneylonhttp://cameronneylon.net