nannizziopsiaceaespp. infecng) chelonians) · kf477230_ 0-477232 _ 0-4772.35 _ kf477233_ kf477229_...
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![Page 1: Nannizziopsiaceaespp. infecng) chelonians) · KF477230_ 0-477232 _ 0-4772.35 _ KF477233_ KF477229_ KF477231_ KF477227_ KF4772.36_ KF477237_ 0_ o chiodiicola Oghiodiico'a orrhiodiico'a](https://reader034.vdocuments.us/reader034/viewer/2022042318/5f071ac47e708231d41b53de/html5/thumbnails/1.jpg)
Phylogeny es+ma+on of Nannizziopsiaceae spp. infec+ng
chelonians
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![Page 3: Nannizziopsiaceaespp. infecng) chelonians) · KF477230_ 0-477232 _ 0-4772.35 _ KF477233_ KF477229_ KF477231_ KF477227_ KF4772.36_ KF477237_ 0_ o chiodiicola Oghiodiico'a orrhiodiico'a](https://reader034.vdocuments.us/reader034/viewer/2022042318/5f071ac47e708231d41b53de/html5/thumbnails/3.jpg)
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Dataset
• Fungal Internal Transcribed Spacer (ITS) Region • 57 Sequences Total
• 11 from turtle cases • 45 published sequences from GenBank • 1 outgroup – Coccidioides immi+s
• Sequence length heterogeneity • 418 – 590 bp
![Page 5: Nannizziopsiaceaespp. infecng) chelonians) · KF477230_ 0-477232 _ 0-4772.35 _ KF477233_ KF477229_ KF477231_ KF477227_ KF4772.36_ KF477237_ 0_ o chiodiicola Oghiodiico'a orrhiodiico'a](https://reader034.vdocuments.us/reader034/viewer/2022042318/5f071ac47e708231d41b53de/html5/thumbnails/5.jpg)
Mul+ple Sequence Alignment
• Two MSA methods • MAFFT
• v7.273 • FFN-‐NS-‐2 Strategy
• Clustal Omega • Dealign Input Sequences: No • MBED-‐Like Clustering Guide Tree: Yes • MBED-‐Like Clustering Itera+on: Yes • Number of Combined Itera+ons: default(0) • Max Guide Tree Itera+ons: Default • Max HMM Itera+ons: Default • Order: Aligned
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Tree Es+ma+on
• RAxML • v7.7.1 • GTR-‐Gamma model • 100 rapid bootstrap inferences
• Tree comparison • Dendropy4 • 10 FN, 10 FP • Normalized RF Score 0.185185
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MAFFT Alignment
![Page 8: Nannizziopsiaceaespp. infecng) chelonians) · KF477230_ 0-477232 _ 0-4772.35 _ KF477233_ KF477229_ KF477231_ KF477227_ KF4772.36_ KF477237_ 0_ o chiodiicola Oghiodiico'a orrhiodiico'a](https://reader034.vdocuments.us/reader034/viewer/2022042318/5f071ac47e708231d41b53de/html5/thumbnails/8.jpg)
Clustal Omega Alignment