mutagenesis and overexpression of dnase for single molecule studies denise der im-sure program 2007...
Post on 22-Dec-2015
216 views
TRANSCRIPT
Mutagenesis and Mutagenesis and Overexpression of DNase for Overexpression of DNase for
Single Molecule StudiesSingle Molecule Studies
Denise DerDenise DerIM-SURE Program 2007IM-SURE Program 2007
Mentor: Professor Philip CollinsMentor: Professor Philip CollinsCollaborator: Professor Gregory WeissCollaborator: Professor Gregory Weiss
Graduate Students: John Coroneus, Issa Graduate Students: John Coroneus, Issa Moody, Jorge LamboyMoody, Jorge Lamboy
BackgroundBackground Single molecule Single molecule
streptavidin attached to streptavidin attached to carbon nanotubecarbon nanotube
Attachment was Attachment was nonspecificnonspecific EDC/NHS functionalized EDC/NHS functionalized
carbon nanotubecarbon nanotube Tetrameric streptavidinTetrameric streptavidin Four lysines per Four lysines per
monomermonomer
Figure from http://chem.ps.uci.edu/~gweiss/research.htm
EDC = N-ethyl-N’-(3-dimethyl aminopropyl) carbodiimide NHS = N-hydroxysuccinimide
GoalGoal
Site-specific protein attachment via Site-specific protein attachment via cysteine-maleimide chemistry cysteine-maleimide chemistry
Significance: To monitor proteins in real-Significance: To monitor proteins in real-time, to elucidate kinetic information such time, to elucidate kinetic information such as the turnover rate, and to see if the as the turnover rate, and to see if the positioning of the attachment affects the positioning of the attachment affects the performance of nano biosensorperformance of nano biosensor
BackgroundBackground
DNase domain of DNase domain of colicin E9colicin E9 Previously studiedPreviously studied MonomerMonomer No cysteine residuesNo cysteine residues
Figure from the protein data bank online
Methodology OverviewMethodology Overview
Mutagenesis OverexpressionPurification
Activity AssayAttachmentBiosensorDetector
Site-Specific Mutations
Two internal mutations: replacing a serine with a cysteine
Two external mutations: inserting a cysteine at the N-terminus or C-terminus
QuikchangeQuikchange
VerificationVerification
500bp---900bp---
Lane 1: 100 bp ladderLanes 2-3: colony PCR of
C-30 mutantLanes 4-5: miniprep DNALanes 6-7: colony PCR of
C-30 mutantLanes 8-13: colony PCR of
C-49 mutant
1 2 3 4 5 6 7 8 9 10 11 12 13
OverexpressionOverexpression
Lane 1: molecular Lane 1: molecular weight ladderweight ladder
Lane 2: post-lysis cell Lane 2: post-lysis cell pelletpellet
Lane 3: post-lysis Lane 3: post-lysis supernatantsupernatant
Lane 4: pre-lysis Lane 4: pre-lysis supernatantsupernatant
Flowthrough Wash Elution 1 Elution 2
Sample Protein GelSample Protein Gel
Flowthrough Wash Elution1 of C30S mutant
After Dialysis against Water
Lane 1: 1 kb ladderLane 2: miniprep
DNALane 3: miniprep
DNA + DNase
Arising ProblemArising Problem
Size exclusion chromatograph
Mass SpectrumMass Spectrum
Expected kDa: 15.11 kDaActual kDa: 15.104 kDa
Impurity at 11.278 kDa
Future WorkFuture Work
To continue working on purifying the To continue working on purifying the DNase mutantsDNase mutants Adding protease inhibitor and inducing for Adding protease inhibitor and inducing for
less timeless time
To attach to a functionalized nanotubeTo attach to a functionalized nanotube To measure the conductance of single To measure the conductance of single
moleculemolecule
AcknowledgementsAcknowledgements
Collins Group Members: Brett Goldsmith
Steve HuntAlex Kane
Bucky KhalapTatyana Sheps
Danny Wan Phil HaralsonYu-Jin Chen
John Coroneus
Weiss Group Members: John Coroneus
Issa MoodyJorge Lamboy
Michael TodhunterCalvin Kong
Sarah KiehnaLucie Lee
Sudipta MajumdarAgi Hajduczki
Ryan Lin Cathie Overstreet
Juan Diaz Glenn Eldridge
IM-SURE/UROP programNational Science FoundationSaid ShokairProfessor Philip CollinsProfessor Gregory Weiss
Questions?