Mobyle 1.0: new features, new types of services

Hervé Ménager, Bertrand Néron, Vivek Gopalan, Sandrine Larroudé, Julien Maupetit, Adrien

Saladin, Pierre Tuffery, Yentram Huyen, Bernard Caudron

Bioinformatics Open Source Conference, July 15th, 2011

What is Mobyle

Providing an access to bioinformatics resources for biologists

?

New types of services: Workflows

● Beyond the existing "interactive pipe" functionality

● Automated chaining or sequential/parallel jobs

● base is the same XML description as the other types of services,

● specificity: Execution

specified as the coordinated execution of multiple tasks

Workflow forms

Workflow results

Workflow details and monitoring

Workflows portal integration● In the portal's left menu,

searchable and sortable the same way as programs.

● In the "interactive pipe" menus

Viewers: VARNA example

Viewers: implementation● base is the same XML description as the other types of

services,

● specificity: includes a template for a custom chunk of HTML code.

Other existing viewers

Soon: viewers are good, editors are better!

Other new features● Improved workspace management:

○ easier workspace cleanup○ bookmark->service links

● Execution engine flexibility○ multiple DRMs configuration allowed and multi-DRM

job routing.○ new supported DRM: LSF

● OpenID authentication

● Google Analytics reporting integration

thanks to Olivier Sallou (GenOuest)

Acknowledgements

Institut PasteurBertrand NéronSandrine LarroudéCorinne MaufraisNicolas JolyBernard CaudronSophie Créno NCSU Ignazio CarboneTrent Monacell

RPBSJulien MaupetitPierre TufféryAdrien Saladin

LIPM ToulouseSébastien Carrère

GenOuestOlivier SallouAnthony Bretaudeau

NIAID BCBBVivek GopalanYentram Huyen

And many others...