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    Scale

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    Discovery of

    Microorganisms Antony van

    Leeuwenhoek

    (1632-1723) first person to

    observe and

    describe

    micro-organisms

    accuratelyFigure 1.1b

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    Lenses and the Bending of

    Light light is refracted (bent) when passing

    from one medium to another

    refractive index a measure of how greatly a substance slows

    the velocity of light

    direction and magnitude of bending isdetermined by the refractive indexes of

    the two media forming the interface

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    Lenses

    focus light rays at a specific placecalled the focal point

    distance between center of lens andfocal point is the focal length

    strength of lens related to focal

    length short focal length more

    magnification

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    Figure 2.2

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    The Light Microscope

    many types

    bright-field microscope

    dark-field microscope

    phase-contrast microscope

    fluorescence microscopes

    are compound microscopes

    image formed by action of 2 lenses

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    The Bright-Field

    Microscope produces a dark image against a

    brighter background

    has several objective lensesparfocalmicroscopes remain in focus

    when objectives are changed

    total magnification product of the magnifications of the

    ocular lens and the objective lens

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    Figure 2.3

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    Microscope Resolution

    ability of a lens to separate or

    distinguish small objects that are

    close together wavelength of light used is major

    factor in resolution

    shorter wavelength greater resolution

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    working distancedistance between the front surface of lens and surface of

    cover glass or specimen

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    Figure 2.5

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    Figure 2.6

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    The Dark-Field Microscope

    produces a bright image of the

    object against a dark background

    used to observe living, unstainedpreparations

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    Figure 2.7b

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    The Phase-Contrast

    Microscope enhances the contrast between

    intracellular structures having slight

    differences in refractive index

    excellent way to observe living cells

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    Figure 2.9

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    Figure 2.10

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    The Differential Interference

    Contrast Microscope creates image by detecting

    differences in refractive indices andthickness of different parts of

    specimen

    excellent way to observe living cells

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    The Fluorescence

    Microscope exposes specimen to ultraviolet,

    violet, or blue light

    specimens usually stained withfluorochromes

    shows a bright image of the object

    resulting from the fluorescent light

    emitted by the specimen

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    Figure 2.12

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    Figure 2.13c and d

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    Fixation process by which internal and external

    structures are preserved and fixed inposition

    process by which organism is killed andfirmly attached to microscope slide

    heat fixing

    preserves overall morphology but not internal

    structures chemical fixing

    protects fine cellular substructure andmorphology of larger, more delicate organisms

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    Dyes and Simple Staining

    dyes

    make internal and external structuresof cell more visible by increasing

    contrast with backgroundhave two common features

    chromophore groups

    chemical groups with conjugated doublebonds

    give dye its color

    ability to bind cells

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    Dyes and Simple Staining

    simple staining

    a single staining agent is used

    basic dyesare frequently used dyes with positive charges

    e.g., crystal violet

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    Differential Staining

    divides microorganisms into groups

    based on their staining properties

    e.g., Gram stain e.g., acid-fast stain

    C G C f

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    Gram staining

    most widely used differential

    staining procedure

    divides Bacteria into two groupsbased on differences in cell wall

    structure

    C i ht Th M G Hill C i I P i i i d f d ti di l

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    Figure 2.14

    primarystain

    mordant

    counterstain

    decolorization

    positive

    negative

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    Acid-fast staining

    particularly useful for stainingmembers of the genusMycobacter ium

    e.g., Mycobacter ium tuberculosiscausestuberculosis

    e.g., Mycobacter ium lepraecauses leprosy

    high lipid content in cell walls isresponsible for their stainingcharacteristics

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    Staining Specific

    Structures Negative staining

    often used to visualize capsules

    surrounding bacteria

    capsules are colorless against a stained

    background

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    Electron Microscopy

    beams of electronsare used toproduce images

    wavelength ofelectron beam ismuch shorter than

    light, resulting inmuch higherresolution

    Figure 2.20

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    The Transmission Electron

    Microscope electrons scatter when they pass

    through thin sections of a specimen

    transmitted electrons (those that do

    not scatter) are used to produce

    image

    denser regions in specimen, scatter

    more electrons and appear darker

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    Figure 2.23

    EM

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    Specimen Preparation

    analogous to procedures used for

    light microscopy

    for transmission electronmicroscopy, specimens must be cut

    very thin

    specimens are chemically fixed andstained with electron dense material

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    py g p , q p p y

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    Other preparation methods

    shadowing

    coating specimen with a thin film of a

    heavy metal freeze-etching

    freeze specimen then fracture along

    lines of greatest weakness (e.g.,membranes)

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    py g p , q p p y

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    Figure 2.25

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    Ebola

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    Fly head

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    The Scanning Electron

    Microscope uses electrons reflected from the

    surface of a specimen to create

    image

    produces a 3-dimensional image of

    specimens surface features

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    Figure 2.27

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    Newer Techniques in

    Microscopy confocalmicroscopyandscanning probe

    microscopy have extremely

    high resolution

    can be used toobserve individualatoms

    Figure 2.20

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    Confocal Microscopy

    confocal scanning laser microscope

    laser beam used to illuminate spots

    on specimen computer compiles images created

    from each point to generate a 3-

    dimensional image

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    Figure 2.29

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    Figure 2.30

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    Scanning Probe

    Microscopy scanning tunneling microscope

    steady current (tunneling current)maintained between microscope probe

    and specimen

    up and down movement of probe as it

    maintains current is detected and used

    to create image of surface of specimen

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    Scanning Probe

    Microscopy atomic force microscope

    sharp probe moves over surface ofspecimen at constant distance

    up and down movement of probe as it

    maintains constant distance is detectedand used to create image