microbiology, virusology, immunology department medical mycology as. o.b. kuchmak

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Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

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Page 2: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Medical Mycology

TheseLecture

Students

The Sea of Knowledge

Page 3: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Medical Mycology Outline

1. Introduction, Actinomycetes2. Yeasts, Dermatophytes3. Filamentous Fungi, Dimorphic Fungi4. Dimorphic Fungi5. Opportunistic Fungi

Page 4: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

OBJECTIVES

–To impart sufficient basic science of the medically important fungi to assist you in diagnosing mycotic diseases.

–To impart sufficient clinical knowledge

to raise your index of suspicion for mycotic diseases.

Page 5: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
Page 6: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

What is a Fungus ?

• Eukaryotic – a true nucleus

• Do not contain chlorophyll

• Have cell walls

• Produce filamentous structures

• Produce spores

Page 7: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

KINGDOM CHARACTERISTIC EXAMPLE

     

Monera Prokaryocyte BacteriaActinomyces

Protista Eukaryocyte Protozoa

Fungi Eukaryocyte * Fungi

Plants Eukaryocyte PlantsMoss

Animals Eukaryocyte * ArthropodsMammals

Man

Page 8: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

KINGDOM CHARACTERISTIC EXAMPLE

     

Monera Prokaryocyte BacteriaActinomyces

Protista Eukaryocyte Protozoa

Fungi Eukaryocyte * Fungi

Plants Eukaryocyte PlantsMoss

Animals Eukaryocyte * ArthropodsMammals

Man

Page 9: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

ALL EUKARYOTIC CELLS CONTAIN STEROLS

•Mammalian cells – cholesterol

•Fungal cells - ergosterol

Page 10: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Cocci 0.8 u

Bacilli 4-6 u

Spirochetes 8 - 10 u

Viruses 0.08 u

Protozoa 15 u

Nematodes 10 mm

Fungi 10 – 15 u

SIZE COMPARISON OF PATHOGENS

Page 11: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Species of Fungi

• 100,000 – 200,000 species

• About 300 pathogenic for man

Page 12: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

The taxonomy of the Kingdom Fungi is evolving and is controversial. Formerly based on gross and light microscopic morphology, studies of ultra structure, biochemistry and molecular biology provide new evidence on which to base taxonomic positions.

Medically important fungi are in four phyla:

1.Ascomycota - Sexual reproduction in a sack called an ascus with the production of ascopspores

2.Basidiomycota -Sexual reproduction in a sack called a basidium with the production of basidiospores

3.Zygomycota - sexual reproduction by gametes and asexual reproduction with the formation of zygospores

4.Mitosporic Fungi (Fungi Imperfecti) - no recognizable form of sexual reproduction. Includes most pathogenic fungi.

 

Page 13: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Classification

◘ ASCOMYCOTA Trichophyton Microsporum Blastomyces◘ BASIDIOMYCOTA Cryptococcus neoformans◘ DEUTEROMYCOTA Epidermophyton Sporothrix Candida species ◘ ZYGOMYCOTA Rhizopus nigrans

Page 14: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Actinomyces(True Bacteria)

• Tradition• Clinical infection resembles mycoses• Actinomyces grow on mycotic media• Actinomyces grow slowly (24-48 h)• Gross colonies resemble fungi

– (rough,heaped, short aerial filaments)

• Resemble mycelia microscopically, with branched mycelia in tissue and smears.

Page 15: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

What is Medical Mycology ?

Page 16: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

PATHOGENIC FUNGI

• NORMAL HOST• Systemic pathogens - 25 species• Cutaneous pathogens - 33 species• Subcutaneous pathogens - 10 species

• IMMUNOCOMPROMISED HOSTOpportunistic fungi - 300 species

Page 17: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

MYCOTIC DISEASES(Four Types)

1. Hypersensitivity– Allergy

2. Mycotoxicosis– Production of toxin

3. Mycetismus (mushroom poisoning)– Pre-formed toxin

4. Infection

Page 18: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Hypersensitivity

Farmer’s lung Moldy hay

Malt worker’s disease Moldy barley

Cheese washer’s lung Moldy cheese

Wood trimmer’s disease Moldy wood

Page 19: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

PARASITIC STATE

1. Increased metabolic state

2. Modified metabolic pathways

3. Modified cell wall structure– Carbohydrate content– Lipid structure– RNA aggregates

Page 20: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

PATHOGENICITY OF FUNGI

1. Thermotolerance

2. Ability to survive in tissue environment

3. Ability to withstand host defenses

Page 21: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

REVIVED INTEREST IN MYCOLOGY

• Increased frequency of mycotic diseases• Increased awareness by physicians• Better trained laboratory personnel• More invasive procedures used on patients• Increased use of immunosuppressive drugs• Increase in immunosuppressive disease

7. Better laboratory diagnostic tools

Page 22: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

EYE

SKIN

UROGENITAL TRACT

ANUS

MOUTHRESPIRATORY

TRACT

PORTAL OF ENTRY

•SKIN

•HAIR

•NAILS

•RESPIRATORY TRACT

•GASTROINTES-TINAL TRACT

•URINARY TRACT

Page 23: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

EYE

SKIN

UROGENITAL TRACT

ANUS

MOUTHRESPIRATORY

TRACT

COLONIZATION

Multiplication of an organism at a given site without harm to the host

Page 24: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

EYE

SKIN

UROGENITAL TRACT

ANUS

MOUTHRESPIRATORY

TRACT

INFECTION

Invasion and multiplication of organisms in body tissue resulting in local cellular injury..

Page 25: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

GEOGRAPHIC DISTRIBUTION

The present ease and frequency of world-wide travel make it more likely that physicians in the United States will be confronted with a variety of unfamiliar mycoses acquired in distant parts of the country or of the world.

Page 26: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

MORPHOLOGY

Fungi exist in three morphologic form:

1. Yeasts 2. Molds. 3. Dimorphs.

Page 27: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

• Pathogenic fungi can exist as yeasts or as hyphae (figure 4). A mass of hyphae is called mycelia. Yeasts are unicellular organisms and mycelia are multicellular filamentous structures, constituted by tubular cells with cell walls. The yeasts reproduce by budding. The mycelial forms branch and the pattern of branching is an aid to the morphological identification. If the mycelia do not have SEPTA, they are called coenocytic (nonseptate). The terms "hypha" and "mycelium" are frequently used interchangeably. Some fungi occur in both the yeast and mycelial forms. These are called dimorphic fungi.

Page 28: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Clinical Classification of Mycoses

CutaneousSubcutaneousSystemicOpportunistic

Page 29: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Cutaneous Mycoses

Skin, hair and nails

Rarely invade deeper tissue

Dermatophytes

Page 30: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Subcutaneous Mycoses

• Confined to subcutaneous tissue and rarely spread systemically.

• The causative agents are soil organisms introduced into the extremities by trauma

Page 31: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Systemic Mycoses

• Involve skin and deep viscera

• May become widely disseminated

• Predilection for specific organs

Page 32: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

OPPORTUNISTIC FUNGI

Ubiquitous saprophytes and occasional pathogens that invade the tissues of those patients who have:

•Predisposing diseases: Diabetes, cancer, leukemia, etc.

•Predisposing conditions: Agammaglobulinemia, steroid or

antibiotic therapy.

Page 33: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

MOST MYCOTIC AGENTS

ARE SOIL SAPRPHYTES

EPIDEMIOLOGY

Page 34: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Mycotic Diseases Are NOT

Contagious

Page 35: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

1. Wet Mount2. Skin test3. Serology4. Fluorescent antibody5. Biopsy and histopathology6. Culture7. DNA probes

DIAGNOSIS

Page 36: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Diagnosis

1. Wet Mount2. Skin test3. Serology4. Fluorescent antibody5. Biopsy and histopathology6. Culture7. DNA probes

Page 37: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

DIRECT MICROSCOPIC OBSERVATION

• 10 % KOH

• Gentle Heat

Page 38: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
Page 39: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

KOH Wet Mount

Page 40: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Diagnosis

1. Wet Mount2. Skin test3. Serology4. Fluorescent antibody5. Biopsy and histopathology6. Culture7. DNA probes

Page 41: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

SKIN TESTING(DERMAL HYPERSENSTIVITY)

Use is limited to :

– Determine cellular defense mechanisms– Epidemiologic studies

Page 42: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
Page 43: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Diagnosis

1. Wet Mount2. Skin test3. Serology4. Fluorescent antibody5. Biopsy and histopathology6. Culture7. DNA probes

Page 44: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

FUNGI ARE POOR ANTIGENS

Page 45: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

FUNGAL SEROLOGYANTIBODIES

• Latex Agglutination IgM

• Immunodiffusion IgG

• Complement Fixation IgG

Page 46: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
Page 47: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Most serological tests for fungi measure antibody. Newer tests to measure antigen are now being developed

ANTIGEN DETECTION PRESENTLY AVAILABLE

Cryptococcosis Aspergillosis Histoplasmosis

Page 48: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Diagnosis

1. Wet Mount2. Skin test3. Serology4. Fluorescent antibody5. Biopsy and histopathology6. Culture7. DNA probes

Page 49: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

DIRECT FLUORESCENT ANTIBODY

CAN BE APPLIED TO

1. HISTOLOGIC SECTIONS

2. CULTURE

• Viable organisms• Non-viable organisms

Page 50: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
Page 51: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Diagnosis

1. Wet Mount2. Skin test3. Serology4. Fluorescent antibody5. Biopsy and histopathology6. Culture7. DNA probe

Page 52: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

INFLAMMATORY REACTION

• Normal host–Pyogenic

–Granulomatous

• Immunodeficient host–Necrosis

Page 53: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Polymorphic Nuclear Leukocytes

Page 54: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

GMS

Page 55: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Diagnosis

1. Wet Mount2. Skin test3. Serology4. Fluorescent antibody5. Biopsy and histopathology6. Culture7. DNA probes

Page 56: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

ISOLATION MEDIA

SABOURAUD DEXTROSE AGAR

(pH ~ 5.6)

•Plain

•With antibiotics

•With cycloheximide

Page 57: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

INCUBATION TEMPERATURE

• 37 C - Body temperature

• 25 C - Room temperature

Page 58: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Diagnosis

1. Wet Mount2. Skin test3. Serology4. Fluorescent antibody5. Biopsy and histopathology6. Culture7. DNA probes

Page 59: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

DNA Probes

• Rapid (1 Hour)

• Species specific

• Expensive

Page 60: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

TREATMENT

Page 61: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

THERAPY

Because they are eukaryotic, fungi are biochemically similar to the human host. Therefore it is difficult to develop chemotherapeutic agents that will destroy the invading fungus without harming the patient.

Page 62: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

A BASIC TENET OF PATHOLGY IS:

A CAUSE OF IRREVERSIBLE CELL INJURY IS CELL MEMBRANE DAMAGE.

Page 63: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

IN FUNGAL THERAPY

We attempt to induce cell injury by causing the cell membrane of the fungus to become permeable.

Page 64: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

PROBLEM

Finding an agent that will selectively injure fungal cell walls without damaging the host cell.

Page 65: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Cryptococcosis

A sub-acute or chronic infection which may affect the lungs or skin but most commonly manifests as a meningitis

Page 66: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Cryptococcus neoformans

• Spherical

• 5-10 microns

• Narrow- base

• Surrounded by polysaccharide capsule

Page 67: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Cryptococcus neoformans

Virulence factors

1. Anti-phagocytic polysaccharide capsule

2. Antioxidant melanin

3. Ability to grow at 37 C

Page 68: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
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Ecological Niche

Cryptococcus neoformans

• Pigeon droppings

• Chicken droppings

Page 71: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Cryptococcusportal of entry

• Inhalation

• inoculation

Page 72: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Typical clinical course• Inhalation

• Mild pneumonia

• Vision, lethargy, headache

• Delirium, nuchal rigidity, coma

• Over a period of months

• Death if not treated

Page 73: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Clinical Specimens

Cryptococcosis

•CSF•Sputum•Pus•Biopsy material•urine

Page 74: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Specimen of choice

Cerebrospinal fluid

Page 75: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
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Serological Tests

Cryptococcosis

• Indirect fluorescent antibody• Tube Agglutination• Latex Agglutination (measures antigen)

Page 80: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
Page 81: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Drugs of Choice

Cryptococcosis

•Amphotericin B plus 5-Flucytosine

OR

•Amphotericin B plus Fluconazole

Page 82: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Yeasts

Unicellular forms that are

spherical or ovoid in shape.

Round to oval, single cells

which reproduce by budding

Page 83: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

8-12 MICRONS

Page 84: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Pseudomycelium

Page 85: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
Page 86: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Clinical SpecimensCandida

• Sputum

• Scrapings from lesions

• Blood smears

• Vaginal discharge

• Urine

• Feces

• Nail clippings

Page 87: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

SEROLOGY• There have been several antibody

detection test, but none are significant.

• Beta-Glucan measurement is now showing promise

Page 88: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Therapy

• Nystatin– Vaginitis– Cutaneous

• Fluconazole *

• Itraconazole

Page 89: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Cryptococcosis

A sub-acute or chronic infection which may affect the lungs or skin but most commonly manifests as a meningitis

Page 90: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Yeasts

Unicellular forms that are spherical or ovoid in shape

• Hyphae (filamentous fungi, mycelium)– Septate– Coenocytic (non-septate)

• Dimorphic– Yeast– Mycelium

Page 91: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

Yeasts

Unicellular forms that are spherical or ovoid in shape

• Hyphae (filamentous fungi, mycelium)– Septate– Coenocytic (non-septate)

• Dimorphic– Yeast– Mycelium

Page 92: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
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Dimorphic Fungi

• Yeast Form• Parasitic form• Tissue form• Cultured at 37 C

• Mycelial Form• Saprophytic form• Cultured at 25 C

Page 96: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak

SPORES

• SEXUAL

• ASEXUAL– Arthrospore– Blastospore– Chamydospore– Conidia

• Microconidia• Macroconidia

Page 97: Microbiology, virusology, immunology department Medical Mycology as. O.B. Kuchmak
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