methods & models for fmri data analysis – hs 2013 david cole andrea diaconescu jakob heinzle...
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Methods & models for fMRI data analysis – HS 2013
David ColeAndrea DiaconescuJakob HeinzleSandra IglesiasSudhir Shankar RamanKlaas Enno Stephan
Room: ETZ F91
Time: Fri, 12:00 – 13:30Schedule:
27.09.: BOLD neurophysiology (Jakob Heinzle)
04.10.: Spatial preprocessing of fMRI images (David Cole)
11.10.: The General Linear Model for fMRI analyses (K.E. Stephan)
18.10.: Classical (frequentist) inference (NN)
25.10.: Multiple comparison correction (K.E. Stephan)
01.11.: Experimental design (Sandra Iglesias)
08.11.: Event-related fMRI and design efficiency (K.E. Stephan)
15.11.: Variational Bayes & Bayesian model selection (Sudhir Shankar Raman)
22.11.: Computational Neuroimaging (Andreea Diaconescu)
29.11.: Multivariate models for fMRI (K.E. Stephan)
06.12.: Basics of Dynamic Causal Modelling (Sudhir Shankar Raman)
13.12.: Practical session on DCM (K.E. Stephan)
20.12.: Advanced aspects of Dynamic Causal Modelling (K.E. Stephan)
Methods & models for fMRI data analysis
FAQs
• slides on TNU website: www.translationalneuromodeling.org• 3 credit points• attendance requirements: 11/13 presentations• exam:
– 10.01.2014, 12:00-13:30– 36 multiple choice questions (18 correct answers required for passing),
90 minutes duration
For all administrative issues, please contact Silvia Princz ([email protected]).
Statistical Parametric Mapping (SPM)
Realignment Smoothing
Normalisation
General linear model
Statistical parametric map (SPM)Image time-series
Parameter estimates
Design matrix
Template
Kernel
Gaussian field theory
p <0.05
Statisticalinference
SPM8
• the history
• the program
• the spirit
SPM documentation
peer reviewed literature SPM course notes,SPM book & SPM manual
online help & function descriptions
algorithm descriptions,code annotations,pseudo-code
SPM online bibliography
http://www.fil.ion.ucl.ac.uk/
spm/
SPM web site• Introduction to SPM
• SPM distribution:SPM99, SPM2, SPM5, SPM8
• Documentation & Bibliography
• SPM email discussion list
• SPM short course
• Example data sets
• SPM extensions
• Introduction to SPM
• SPM distribution:SPM99, SPM2, SPM5, SPM8
• Documentation & Bibliography
• SPM email discussion list
• SPM short course
• Example data sets
• SPM extensions
http://www.fil.ion.ucl.ac.uk/spm/
• [email protected]– Web home page
• http://www.fil.ion.ucl.ac.uk/spm/support/• Archives, archive searches, membership lists, instructions
– Subscribe• http://www.jiscmail.ac.uk/• email [email protected]
– join spm Firstname Lastname
– Participate & learn• email [email protected]• Monitored by SPMauthors• Usage queries, theoretical discussions,
bug reports, patches, techniques, &c…
• [email protected]– Web home page
• http://www.fil.ion.ucl.ac.uk/spm/support/• Archives, archive searches, membership lists, instructions
– Subscribe• http://www.jiscmail.ac.uk/• email [email protected]
– join spm Firstname Lastname
– Participate & learn• email [email protected]• Monitored by SPMauthors• Usage queries, theoretical discussions,
bug reports, patches, techniques, &c…
[email protected]://www.fil.ion.ucl.ac.uk/spm/support/
SPM email list