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Membranes and proteins Andrei Leitão

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Page 1: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Membranes and proteins

Andrei Leitão

Page 2: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Lipids

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Page 3: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Fatty acids

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Page 4: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Glycerol and triacylglycerol

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Page 5: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Phosphatidylipids

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Page 6: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Cholesterol

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Page 7: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Lipids

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Page 8: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Composition of cell membranes

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Page 9: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Go figure...

9 The Granger Collection, New York; Inset Biophoto Associates/Getty Images, Inc.;

Hooke’s “cell” image

It is not a cell... It is a cell wall of a vegetable

It is not made with lipids... but saccharides

Is there any error? Yes!

http://plantphys.info/plant_physiology/basiccytology1.shtml http://www.intechopen.com/books/biodegradation-life-of-science/biodegradable-polymers

Page 10: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Plasma membrane

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Page 11: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Micelle and bilayer

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Page 12: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Types of membrane proteins

Page 13: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Asymmetry of membrane

13 Figure 10-16 Molecular Biology of the Cell (© Garland Science 2008)

Page 14: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Asymmetry of membrane

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Page 15: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Lipid droplets

15 Figure 10-15 Molecular Biology of the Cell (© Garland Science 2008)

Page 16: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Distribution of integral proteins

Freeze fracture: a technique for investigating cell membrane structure

E: ectoplasmic face P: protoplasmic face

Surface of an erythrocyte

Karp, G. “Cell and Molecular Biology-Concepts and Experiments” Chapter 4. The Structure and Function of the Plasma Membrane

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Page 17: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Integral protein movement is not all random

Protein A is capable of diffusing randomly throughout the membrane, though its rate of movement may be limited. Protein B is immobilized. It interacts with the underlying membrane skeleton. Protein C moves in a particular direction. It interacts with a motor protein at the cytoplasmic surface of the membrane. Protein D is restricted by other integral proteins of the membrane. Protein E is restricted by fences formed by proteins of the membrane skeleton, but it can hop into adjacent compartments through transient openings in a fence. Protein F is restrained by extracellular materials. 17

Page 18: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Potassium channel

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Page 19: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Voltage-gated K+ channel

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Drosophila K+ Shaker ion channel

Page 20: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Voltage-gated K+ channel

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Page 21: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Bacteriorhodopsin: light-driven proton-pump

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Page 22: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

β-barrel transmembrane proteins

22 Figure 10-26 Molecular Biology of the Cell (© Garland Science 2008)

Page 23: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Membrane potential

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Page 24: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Basic mechanisms by which solute molecules move across membranes

(a) Simple diffusion. (b) Simple diffusion through an aqueous channel. (c) Facilitated diffusion. (d ) Active transport. (e) Different mechanisms with examples.

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Page 25: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Permeability vs. partition

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Intercellular interactions

http://www.mun.ca/biology/desmid/brian/BIOL2060/BIOL2060-17/CB17.html 26

Page 27: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Intercellular interactions

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http://www.mun.ca/biology/desmid/brian/BIOL2060/BIOL2060-17/CB17.html

Page 28: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Intercellular interactions

http://www.mun.ca/biology/desmid/brian/BIOL2060/BIOL2060-17/CB17.html 28

Page 29: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Intercellular interactions

http://www.mun.ca/biology/desmid/brian/BIOL2060/BIOL2060-17/CB17.html 29

Page 30: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Mechanobiology • Mechanobiology is the study of the interrelationship of force and biology.

• Mechanisms of force sensation and transduction that control cell behavior in health and disease.

http://www.bioe.psu.edu/mechlab/

http://www.mechanobiology.nl/MechBio2016

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Page 31: Membranes and proteins - nequimed.iqsc.usp.brnequimed.iqsc.usp.br/files/2016/04/Membranes-and-proteins.pdf · investigating cell membrane structure E: ectoplasmic face P: protoplasmic

Mechanobiology

Read this paper: Iskratsch, T.; Wolfenson; H.; Sheetz, M.P. Appreciating force and shape — the rise of mechanotransduction in cell biology Nat. Rev. Mol. Cell Biol. 2014, 15, 825 link

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Mechanobiology & biomechanics

Working groups:

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