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TRANSCRIPT
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
Jonathan FITZGERALD, Romain COLAS, Masakazu SHINOHARA, Jesmond DALLI and Charles SERHAN
Center for Experimental TherapeuFcs and Reperfusion Injury, Harvard InsFtute of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, MassachuseOs 02115 U.S.A.
Correspondence should be addressed to: Prof. Charles N. Serhan Harvard InsFtute of Medicine 77 Avenue Louis Pasteur, HIM 829 Boston, MA 02115.
Email: [email protected]; Tel: 617-‐525-‐5001; Fax: 617-‐525-‐5017
HARVARD MEDICAL SCHOOL
BRIGHAM AND WOMEN’S HOSPITAL
Version: 02142014 1/104
Table of Contents
Lipid Mediator Structures & Stereochemistry 3 Arachidonic Acid Metabolome 4 Eicosapentaenoic Acid Metabolome 9 Docosahexaenoic Acid Metabolome 13 Aspirin-‐Triggered Specialized Pro-‐resolving Mediators 18 Deuterium Labeled Internal Standards 22
Methods 25 OperaEonalizaEon of lipid mediator metabololipidomics 26 High Pressure Liquid Chromatography 27 Mass Spectrometry 27 Methods validaEon 30
Linearity and aHributed internal standard 30 Recovery, matrix interference and limit of detecEon 31 Repeatability and reproducibility 32 Chemical stability of selected endogenous lipid mediators idenEfied in human serum 36
MulEple ReacEon Monitoring TransiEons 37 Lipid Mediators 38 Aspirin-‐Triggered Lipid Mediators 38 Further Metabolites of Lipid Mediators 39
Lipid Mediator BiosyntheEc Pathways 40 Prostaglandins, Leukotrienes and Lipoxins 41 E-‐Series Resolvins 42 D-‐Series Resolvins 43 Aspirin-‐Triggered D-‐Series Resolvins 44 ProtecEns 45 Maresins 46
LC-‐MS/MS Spectra 47 Arachidonic Acid Metabolome 48
Prostaglandins & Thromboxane 48 Leukotrienes 53 Lipoxins 57 MonoHydroxyETE Products 61
Eicosapentaenoic Acid Metabolome 65 Lipoxins 65 E-‐Series Resolvins 68 MonoHydroxyEPE Products 72
Docosahexaenoic Acid Metabolome 77 D-‐Series Resolvins 77 Maresins 83 ProtecEns 86 MonoHydroxyDHA Products 88
Aspirin-‐Triggered Specialized Pro-‐resolving Mediators 93 Deuterium Labeled Internal Standards 99
2/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Lipid Mediator Structures & Stereochemistry
3/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Arachidonic Acid Metabolome
4/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Complete
Stereo
chem
istry
5Z,8Z,11
Z,14
Z-‐Eicosatetraeno
ic acid
11-‐oxo-‐
9α,15S-‐
dihydroxy-‐
5Z,13E-‐
prostadien
oic acid
9-‐oxo-‐
11α,15S-‐
dihydroxy-‐
5Z,13E-‐
prostadien
oic acid
9α,11α
,15S-‐
trihydroxy-‐
5Z,13E-‐
prostadien
oic acid
Trivial N
ame
Arachidon
ic acid
Prostaglandin D2
Prostaglandin E 2
Prostaglandin F 2
α
Chem
ical Nam
e
Eicosatetraeno
ic
acid
11-‐dehydro-‐
prostaglandin F 2
α
9-‐de
hydro-‐
prostaglandin F 2
α
9α,11α
,15S-‐
trihydroxy-‐
prostaglandin F 2
α
Form
ula
C 20H
32O2
C 20H
32O5
C 20H
32O5
C 20H
34O5
Structure
Abb
reviaE
on
AA
PGD2
PGE 2
PGF 2
α
COOH
OH
HO O
COOH
OH
O
HO
COOH
OH
HO
HO
COOH
5/104
Complete
Stereo
chem
istry
9α,�11,�15
S-‐�
trihydroxy-‐
5Z,�13E-‐
thromba�dien
�oic acid
5S,�12R
-‐� dihydroxy-‐�
6Z,�8E,�10
E,�14
Z-‐�
eicosatetraeno
ic acid
5S,�12R
,20-‐�
trihydroxy-‐�
6Z,�8E,�10
E,�14
Z-‐�
eicosatetraeno
ic acid
5S,�12R
-‐� dihydroxy-‐
�6Z,�8E,�10
E,�14
Z-‐�
20-‐carbo
xy-‐
eicosatetraene
dioic acid
Trivial N
ame
Thrombo
xane
B2
Leukotrien
e B 4
20-‐hydroxy-‐
Leukotrien
e B 4
20-‐carbo
xy-‐
Leukotrien
e B 4
Chem
ical Nam
e
9α,�11,�15
S-‐�
trihydroxy-‐
thrombo
xane
B2
5S,12R
-‐ dihydroxy-‐�
LTB 4
5S,12R
,20-‐
trihydroxy-‐�
LTB 4
5S,12R
-‐ dihydroxy-‐�
20-‐carbo
xy-‐
LTB 4
Form
ula
C 20H
34O6
C 20H
32O4
C 20H
32O5
C 20H
30O6
Structure
Abb
reviaE
on
TxB 2
LTB 4
20-‐OH-‐LTB
4
20-‐COOH-‐LTB
4
COOH
OH
OHO
OH
COOH
OH
OH
COOH
OH
OH
OH
6/104
COOH
COOH
OH
OH
Complete
Stereo
chem
istry
5S,6R,15
S-‐
trihydroxy-‐
7E,9E,11
Z,13
E-‐eicosatetraeno
ic acid
5S,14R
,15S-‐
trihydroxy-‐
6E,8Z,10
E,12
E-‐
eicosatetraeno
ic acid
5S,�15S-‐
�dihydroxy-‐
�6E,�8Z,�11
Z,�13
E-‐�
eicosatetraeno
ic acid
5-‐�
hydroxy-‐�
6E,�8Z,�11
Z,�14
Z-‐�
eicosatetraeno
ic acid
Trivial N
ame
Lipo
xin A4
Lipo
xin B 4
5S,15S-‐
dihydroxy-‐
eicosatetraeno
ic
acid
5-‐
hydroxy-‐
eicosatetraeno
ic
acid
Chem
ical Nam
e
5S,6R,15
S-‐
trihydroxy-‐
LXA4
5S,14R
,15S-‐
trihydroxy-‐
LXB 4
5S,15S-‐
dihydroxy-‐
ETE
5-‐
hydroxy-‐
ETE
Form
ula
C 20H
32O5
C 20H
32O5
C 20H
32O4
C 20H
32O3
Structure
Abb
reviaE
on
LXA4
LXB 4
5S,15S-‐diHETE
5-‐HETE
COOH
OH
HO
OH
COOH
OH
HO
OH
COOH
OH
COOH
OH
OH
7/104
Complete
Stereo
chem
istry
12-‐�
hydroxy-‐�
5Z,�8Z,�10
E,�14
Z-‐�
eicosatetraeno
ic acid
15-‐�
hydroxy-‐�
5Z,�8Z,�11
Z,�13
E-‐�
eicosatetraeno
ic acid
Trivial N
ame
12-‐
hydroxy-‐
eicosatetraeno
ic
acid
15-‐
hydroxy-‐
eicosatetraeno
ic
acid
Chem
ical Nam
e
12-‐
hydroxy-‐
ETE
15-‐
hydroxy-‐
ETE
Form
ula
C 20H
32O3
C 20H
32O3
Structure
Abb
reviaE
on
12-‐HETE
15-‐HETE
COOH
OH
COOH
OH
8/104
Eicosapentaenoic Acid Metabolome
9/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Complete
Stereo
chem
istry
5Z,8Z,11
Z,14
Z,17
Z-‐eicosape
ntaeno
ic acid
5S,�6R,�15
S-‐�
trihydroxy-‐
�7E,�9E,�11
Z,�13
E,�17
Z-‐�
eicosape
ntaeno
ic acid
5S,14R
,15S-‐
trihydroxy-‐
6E,8Z,10
E,12
E,17
Z-‐
eicosape
ntaeno
ic acid
5S,�15S-‐�
dihydroxy-‐
�6E,�8Z,�11
Z,�13
E,17
Z-‐�
eicosape
ntaeno
ic acid
Trivial N
ame
Eicosape
ntaeno
ic
acid
Lipo
xin A5
Lipo
xin B 5
5S,15S-‐
dihydroxy-‐
eicosape
ntaeno
ic
acid
Chem
ical Nam
e
Eicosape
ntaeno
ic
acid
5S,6R,15
S-‐
trihydroxy-‐
LXA5
5S,14R
,15S-‐
trihydroxy-‐
LXB 5
5S,15S-‐
dihydroxy-‐
EPE
Form
ula
C 20H
30O2
C 20H
30O5
C 20H
30O5
C 20H
30O4
Structure
Abb
reviaE
on
EPA
LXA5
LXB 5
5S,15S-‐diHEP
E
COOH
OH
HO
OH
COOH
OH
HO
OH
COOH
OH
OH
COOH
10/104
Complete
Stereo
chem
istry
5S,12R
,18R
-‐ trihydroxy-‐
6Z,8E,10
E,14
Z,16
E-‐eicosape
ntaeno
ic acid
5S,18R
-‐ dihydroxy-‐
6E,8Z,11
Z,14
Z,16
E-‐
eicosape
ntaeno
ic acid
17R,18
R-‐
dihydroxy-‐
5Z,8Z,11
Z,13
E,15
E-‐eicosape
ntaeno
ic acid
5-‐
�hydroxy-‐�
6E,�8Z,�11
Z,�14
Z,�17
Z-‐�
eicosape
ntaeno
ic acid
Trivial N
ame
Resolvin E1
Resolvin E2
Resolvin E3
5-‐
hydroxy-‐
eicosape
ntaeno
ic
acid
Chem
ical Nam
e
5S,12R
,18R
-‐trihydroxy-‐
EPE
5S,18R
-‐ dihydroxy-‐
EPE
17R,18
R-‐
dihydroxy-‐
EPE
5-‐
hydroxy-‐
EPE
Form
ula
C 20H
30O5
C 20H
30O4
C 20H
30O4
C 20H
30O3
Structure
Abb
reviaE
on
RvE1
RvE2
RvE3
5-‐HEP
E
COOH
OH
HO
COOH
OH
11/104
COOH
HO
OH
COOH
HO
OH
OH
Complete
Stereo
chem
istry
12-‐�
hydroxy-‐
�5Z,�8Z,�10
E,�14
Z,�17
Z-‐�
eicosape
ntaeno
ic acid
15-‐
�hydroxy-‐�
5Z,�8Z,�11
Z,�13
E,�17
Z-‐�
eicosape
ntaeno
ic acid
18-‐�
hydroxy-‐�
5Z,�8Z,�11
Z,�14
Z,�16
E-‐�
eicosape
ntaeno
ic acid
Trivial N
ame
12-‐
hydroxy-‐
eicosape
ntaeno
ic
acid
15-‐
hydroxy-‐
eicosape
ntaeno
ic
acid
18-‐
hydroxy-‐
eicosape
ntaeno
ic
acid
Chem
ical Nam
e
12-‐
hydroxy-‐
EPE
15-‐
hydroxy-‐
EPE
18-‐
hydroxy-‐
EPE
Form
ula
C 20H
30O3
C 20H
30O3
C 20H
30O3
Structure
Abb
reviaE
on
12-‐HEP
E
15-‐HEP
E
18-‐HEP
E
COOH
OH
COOH
OH
COOH
OH
12/104
Docosahexaenoic Acid Metabolome
13/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Complete
Stereo
chem
istry
4Z,7Z,10
Z,13
Z,16
Z,19
Z-‐do
cosahexaen
oic acid
7S,8R,17
S-‐
trihydroxy-‐
4Z,9E,11
E,13
Z,15
E,19
Z-‐
docosahexaen
oic acid
7S,16R
,17S-‐
trihydroxy-‐
4Z,8E,10
Z,12
E,14
E,19
Z-‐
docosahexaen
oic acid
4S,11R
,17S-‐
trihydroxy-‐
5Z,7E,9E,13Z,15E,19Z-‐
docosahexaen
oic acid
Trivial N
ame
Docosahexaeno
ic
acid
Resolvin D1
Resolvin D2
Resolvin D3
Chem
ical Nam
e
Docosahexaeno
ic
acid
7S,8R,17
S-‐trihydroxy-‐
DHA
7S,16R
,17S-‐
trihydroxy-‐
DHA
4S,11R
,17S-‐
trihydroxy-‐
DHA
Form
ula
C 22H
32O2
C 22H
32O5
C 22H
32O5
C 22H
32O5
Structure
Abb
reviaE
on
DHA
RvD1
RvD2
RvD3
COOH
OH
HO
HO
COOH
14/104
COOH
HO
OH
OH
OH
HO
COOH
HO
Complete
Stereo
chem
istry
4S,5,17S-‐
trihydroxy-‐
6E,8E,10
Z,13
Z,15
E,19
Z-‐
docosahexaen
oic acid
7S,17S-‐
dihydroxy-‐
4Z,8E,10
Z,13
Z,15
E,19
Z-‐
docosahexaen
oic acid
4S,17S-‐
dihydroxy-‐
5E,7Z,10
Z,13
Z,15
E,19
Z-‐
docosahexaen
oic acid
7R,14S-‐
dihydroxy-‐
4Z,8E,10
E,12
Z,16
Z,19
Z-‐do
cosahexaen
oic acid
Trivial N
ame
Resolvin D4
Resolvin D5
Resolvin D6
Maresin 1
Chem
ical Nam
e
4S,5R,17
S-‐
trihydroxy-‐
DHA
7S,17S-‐
dihydroxy-‐
DHA
4S,17S-‐
dihydroxy-‐
DHA
7R,14S-‐
dihydroxy-‐
DHA
Form
ula
C 22H
32O5
C 22H
32O4
C 22H
32O4
C 22H
32O4
Structure
Abb
reviaE
on
RvD4
RvD5
RvD6
MaR
1
COOH
HO
HO
15/104
OH
OH
COOH
OH
OH
OH
HOOC
OH
OH
HOOC
Complete
Stereo
chem
istry
4S,14S-‐
dihydroxy-‐
5E,7Z,10
Z,12
E,16
Z,19
Z-‐do
cosahexaen
oic acid
10R,17
S-‐
dihydroxy-‐
4Z,7Z,11
E,13
E,15
Z,19
Z-‐
docosahexaen
oic acid
4-‐�hydroxy-‐�
5E,�7Z,�10
Z,�13
Z,�16
Z,�19
Z-‐�
docosahexaen
oic acid
7-‐�hydroxy-‐�
4Z,�8E,�10
Z,�13
Z,�16
Z,�19
Z-‐�
docosahexaen
oic acid
Trivial N
ame
4,14-‐diHDHA
[Neu
ro]
ProtecFn
D1
4-‐hydroxy-‐
DHA
7-‐hydroxy-‐
DHA
Chem
ical Nam
e
4S,14S-‐
dihydroxy-‐
DHA
10R,17
S-‐
dihydroxy-‐
DHA
4-‐hydroxy-‐
DHA
7-‐hydroxy-‐
DHA
Form
ula
C 22H
32O4
C 22H
32O4
C 22H
32O3
C 22H
32O3
Structure
Abb
reviaE
on
4S,14S-‐diHDHA
PD1
4-‐HDHA
7-‐HDHA
COOH
OH
OH
COOH
OH
OH
COOH
OH
COOH
OH
16/104
Complete
Stereo
chem
istry
14-‐�hydroxy-‐�
4Z,�7Z,�10
Z,�12
E,�16
Z,�19
Z-‐�
docosahexaen
oic acid
17-‐�hydroxy-‐�
4Z,�7Z,�10
Z,�13
Z,�15
E,�19
Z-‐�
docosahexaen
oic acid
Trivial N
ame
14-‐hydroxy-‐
DHA
17-‐hydroxy-‐
DHA
Chem
ical Nam
e
14-‐hydroxy-‐
DHA
17-‐hydroxy-‐
DHA
Form
ula
C 22H
32O3
C 22H
32O3
Structure
Abb
reviaE
on
14-‐HDHA
17-‐HDHA
OH
COOH
COOH
OH
17/104
Aspirin-‐Triggered Specialized Pro-‐resolving Mediators
18/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Complete
Stereo
chem
istry
5S,6R,15
R-‐
trihydroxy-‐
7E,9E,11
Z,13
E-‐eicosatetraeno
ic acid
5S,14R
,15R
-‐ trihydroxy-‐
6E,8Z,10
E,12
E-‐
eicosatetraeno
ic acid
7S,8R,17
R-‐
trihydroxy-‐
4Z,9E,11
E,13
Z,15
E,19
Z-‐
docosahexaen
oic acid
7S,16R
,17R
-‐ trihydroxy-‐
4Z,8E,10
Z,12
E,14
E,19
Z-‐do
cosahexaen
oic acid
Trivial N
ame
15-‐epi-‐Lipoxin A
4
15-‐epi-‐Lipoxin B
4
Aspirin-‐triggered
Re
solvin D1
Aspirin-‐triggered
Re
solvin D2
Chem
ical Nam
e
5S,6R,15
R-‐
trihydroxy-‐
LXA4
5S,14R
,15R
-‐ trihydroxy-‐
LXB 4
7S,8R,17
R-‐trihydroxy-‐
DHA
7S,16R
,17R
-‐trihydroxy-‐
DHA
Form
ula
C 20H
32O5
C 20H
32O5
C 22H
32O5
C 22H
32O5
Structure
Abb
reviaE
on
AT-‐LXA
4
AT-‐LXB
4
AT-‐RvD
1
AT-‐RvD
2
COOH
OH
HO
OH
COOH
OH
HO
OH
COOH
OH
HO
HO
19/104
COOH
OH
HO
OH
Complete
Stereo
chem
istry
4S,11R
,17R
-‐ trihydroxy-‐
5Z,7E,9E,13Z,15E,19Z-‐
docosahexaen
oic acid
4S,5,17R
-‐ trihydroxy-‐
6E,8E,10
Z,13
Z,15
E,19
Z-‐
docosahexaen
oic acid
7S,17R
-‐ dihydroxy-‐
4Z,8E,10
Z,13
Z,15
E,19
Z-‐
docosahexaen
oic acid
4S,17R
-‐ dihydroxy-‐
5E,7Z,10
Z,13
Z,15
E,19
Z-‐
docosahexaen
oic acid
Trivial N
ame
Aspirin-‐triggered
Re
solvin D3
Aspirin-‐triggered
Re
solvin D4
Aspirin-‐triggered
Re
solvin D5
Aspirin-‐triggered
Re
solvin D6
Chem
ical Nam
e
4S,11R
,17R
-‐trihydroxy-‐
DHA
4S,5,17R
-‐ trihydroxy-‐
DHA
7S,17R
-‐ dihydroxy-‐
DHA
4S,17R
-‐ dihydroxy-‐
DHA
Form
ula
C 22H
32O5
C 22H
32O5
C 22H
32O4
C 22H
32O4
Structure
Abb
reviaE
on
AT-‐RvD
3
AT-‐RvD
4
AT-‐RvD
5
AT-‐RvD
6
HOOC
OH
OH
OH
COOH
HO
HO
20/104
OH
HO
COOH
HO
OH
OH
HOOC
Complete
Stereo
chem
istry
10R,17
R-‐
dihydroxy-‐
4Z,7Z,11
E,13
E,15
Z,19
Z-‐
docosahexaen
oic acid
Trivial N
ame
Aspirin-‐triggered
[Neu
ro]
ProtecFn
D1
Chem
ical Nam
e
10R,17
R-‐
dihydroxy-‐
DHA
Form
ula
C 22H
32O4
Structure
Abb
reviaE
on
AT-‐PD1
COOH
OH
OH
21/104
Deuterium Labeled Internal Standards
22/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Complete
Stereo
chem
istry
9-‐oxo-‐
11α,15S-‐
dihydroxy-‐
5Z,13E-‐
3,3,4,4-‐d 4-‐
prostadien
oic acid
5S,6R,15
S-‐
trihydroxy-‐
7E,9E,11
Z,13
E-‐
19,�19,�20,�20,�20-‐�d
5-‐
eicosatetraeno
ic acid
5S,�12R
-‐� dihydroxy-‐�
6Z,�8E,�10
E,�14
Z-‐�
6,�7,�14,�15-‐�d 4-‐
eicosatetraeno
ic acid
5S-‐�
hydroxy-‐�
6E,�8Z,�11
Z,�14
Z-‐�
5,6,8,9,11,12,14,15-‐�d 8-‐
eicosatetraeno
ic acid
Trivial N
ame
d 4-‐Prostagland
in E
2
d 5-‐Lipoxin A
4
d 4-‐Leu
kotriene
B4
d 8-‐5S-‐
hydroxy-‐
eicosatetraeno
ic
acid
Chem
ical Nam
e
9-‐de
hydro-‐
prostaglandin F 2
α-‐d 4
5S,6R,15
S-‐
trihydroxy-‐
LXA4-‐d 5
5S,12R
-‐ dihydroxy-‐�
LTB 4-‐d
4
5S-‐
hydroxy-‐
ETE-‐d 8
Form
ula
C 20H
28D4O
5
C 20H
27D5O
5
C 20H
28D4O
4
C 20H
24D8O
3
Structure
Abb
reviaE
on
d 4-‐PGE 2
d 5-‐LXA
4
d 4-‐LTB
4
d 8-‐5S-‐HETE
COOH
OH
OH
DD
D
D
COOH
OH
O
HO
DD
DD
COOH
OH
HO
OH
D
D
DD
D
COOH
OH
DD
DD
DD
DD
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Complete
Stereo
chem
istry
7S,16R
,17S-‐
trihydroxy-‐
4Z,8E,10
Z,12
E,14
E,19
Z-‐19
,19,20
,20,20
,20-‐d 5-‐
docosahexaen
oic acid
Trivial N
ame
d 5-‐Resolvin D2
Chem
ical Nam
e
7S,16R
,17S-‐
trihydroxy-‐
DHA -‐d
5
Form
ula
C 22H
27D5O
5
Structure
Abb
reviaE
on
d 5-‐RvD
2
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COOH
OH
HO
OH D D
D
DD
Methods
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Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
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Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Auto-‐extracFon (Solid Phase Extrac6on)
Samples
LC-‐MS-‐MS
Targeted MRM and EPI
Data dependent scan/EMS/MSn
IdenFficaFon
Matching to LM database (RT+ ≥ 6 diagnos6c ions)
QuanFtaFon
Deuterated internal standards
Synthesis of authenFc and syntheFc deuterated
standards
ConstrucFon of authenFc and syntheFc SPM and eicosanoids
database
MSn
Tissue validaFon and reference human samples
(i.e. SRM1950)
ComputaFonal data analysis
Cluster analysis
Principal component analysis
Cells, Fssues, organs and individual profiles
LM profiles (>55) Targeted bioacFve metabolomes
OperaEonalizaEon of lipid mediator metabololipidomics
IdenFficaFon and signature profiles for pro-‐resolving and inflammatory lipid mediators in human Fssue Colas RA, Shinohara M, Dalli J, Chiang N, Serhan CN. Am J Physiol Cell Physiol. 2014
Table 1: High Performance Liquid Chromatography sesngs.
Table 2: Mass Spectrometer sesngs for MulFple ReacFon Monitoring and Enhance Product Ion for AB Sciex 5500 Q TRAP.
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Shimadzu LC20AD HPLC Sesngs
Solvent A H2O (0.01% aceFc acid)
Solvent B Methanol (0.01% aceFc acid)
Flow rate 0.4mL/min
Column Eclipse plus C18, 1.8 µm, 4.6 x 100 mm, AGILENT
Column Heater ThermaSphere TS-‐130, 50°C, PHENOMENEX
Gradient
Time (min) Solvent (%B) 0.0 55 2.0 55 10.0 85 18.0 98 20.0 98 20.1 55 24.5 End
AB Sciex 5500 Q TRAP MS sesng for MRM and EPI
MRM EPI Curtain Gas 25 25 Collision Gas Medium Medium Ion Spray Voltage -‐4000 -‐4000 Temperature 500 °C 500 °C Ion Source Gas 1 40 40 Ion Source Gas 2 40 40
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Table 3: Mass Spectrometer sesngs for MulFple ReacFon Monitoring and Enhance Product Ion for AB Sciex 6500 Q TRAP.
AB Sciex 6500 Q TRAP MS sesng for MRM and EPI
MRM EPI Curtain Gas 30 30 Collision Gas Medium Medium Ion Spray Voltage -‐4500 -‐4500 Temperature 580 °C 580 °C Ion Source Gas 1 80 80 Ion Source Gas 2 70 70
Table 4: Mass Spectrometer sesngs for MulFple ReacFon Monitoring forAB Sciex 5500 Q TRAP. DP=Declustering PotenFal, EP=Entrance potenFal, CE=Collision Energy, CXP=Collision Cell Exit PotenFal
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Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
AB Sciex 5500 Q TRAP Individual lipid mediator, pathway marker, and further metabolite sesng for MRM (V)
Compound DP EP CE CXP AA -‐90 -‐10 -‐41 -‐22 PGD2 -‐80 -‐10 -‐30 -‐15 PGE2 -‐80 -‐10 -‐30 -‐15 PGF2α -‐80 -‐10 -‐30 -‐15 TxB2 -‐80 -‐10 -‐30 -‐15 LTB4 -‐110 -‐10 -‐22 -‐17 20-‐OH-‐LTB4 -‐100 -‐10 -‐26 -‐17 20-‐COOH-‐LTB4 -‐90 -‐10 -‐26 -‐17 LXA4 -‐95 -‐10 -‐22 -‐11 LXB4 -‐90 -‐10 -‐30 -‐21 5,15-‐diHETE -‐110 -‐10 -‐22 -‐17 5-‐HETE -‐90 -‐10 -‐21 -‐22 12-‐HETE -‐70 -‐10 -‐21 -‐15 15-‐HETE -‐65 -‐10 -‐19 -‐18
EPA -‐90 -‐10 -‐41 -‐22 LXA5 -‐95 -‐10 -‐22 -‐11 LXB5 -‐90 -‐10 -‐30 -‐21 5,15-‐diHEPE -‐110 -‐10 -‐22 -‐17 RvE1 -‐80 -‐10 -‐24 -‐16 RvE2 -‐40 -‐10 -‐22 -‐17 RvE3 -‐40 -‐10 -‐22 -‐17 5-‐HEPE -‐60 -‐10 -‐22 -‐11 12-‐HEPE -‐70 -‐10 -‐21 -‐15 15-‐HEPE -‐65 -‐10 -‐19 -‐8 18-‐HEPE -‐65 -‐10 -‐18 -‐23
DHA -‐90 -‐10 -‐41 -‐22 RvD1 -‐90 -‐10 -‐22 -‐13 RvD2 -‐90 -‐10 -‐24 -‐13 RvD3 -‐80 -‐10 -‐28 -‐19 RvD5 -‐40 -‐10 -‐22 -‐17 RvD6 -‐40 -‐10 -‐22 -‐17 MaR1 -‐40 -‐10 -‐22 -‐17 4,14-‐diHDHA -‐40 -‐10 -‐22 -‐17 PD1 -‐40 -‐10 -‐22 -‐17 4-‐HDHA -‐40 -‐10 -‐18 -‐13 7-‐HDHA -‐40 -‐10 -‐18 -‐13 14-‐HDHA -‐70 -‐10 -‐21 -‐15 17-‐HDHA -‐80 -‐10 -‐20 -‐18
d4-‐PGE2 -‐80 -‐10 -‐30 -‐11 d4-‐LXA4 -‐135 -‐10 -‐24 -‐17 d4-‐LTB4 -‐135 -‐10 -‐24 -‐17 d8-‐5S-‐HETE -‐100 -‐10 -‐22 -‐11
d5-‐RvD2 -‐90 -‐10 -‐24 -‐13
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AB Sciex 6500 Q TRAP Individual lipid mediator, pathway marker, and further metabolite sesng for MRM (V)
Compound DP EP CE CXP AA -‐10.0 -‐10.0 -‐10.0 -‐12.0 PGD2 -‐30.0 -‐10.0 -‐22.0 -‐8.0 PGE2 -‐30.0 -‐10.0 -‐22.0 -‐8.0 PGF2a -‐60.0 -‐10.0 -‐33.3 -‐12.0 TxB2 -‐70.0 -‐10.0 -‐25.0 -‐22.0 LTB4 -‐45.0 -‐10.0 -‐21.0 -‐10.8 20-‐OH-‐LTB4 -‐60.0 -‐10.0 -‐22.0 -‐8.0 20-‐COOH-‐LTB4 -‐60.0 -‐10.0 -‐22.0 -‐8.0 LXA4 -‐30.0 -‐10.0 -‐18.2 -‐10.0 LXB4 -‐45.0 -‐10.0 -‐21.5 -‐12.0 5,15-‐diHETE -‐35.0 -‐10.0 -‐18.0 -‐12.0 5-‐HETE -‐30.0 -‐10.0 -‐18.0 -‐9.5 12-‐HETE -‐30.0 -‐10.0 -‐18.0 -‐9.5 15-‐HETE -‐30.0 -‐10.0 -‐18.0 -‐9.5
EPA -‐10.0 -‐10.0 -‐10.0 -‐12.0 LXA5 -‐30.0 -‐10.0 -‐18.6 -‐10.0 LXB5 -‐30.0 -‐10.0 -‐21.2 -‐10.0 5,15-‐diHEPE -‐30.0 -‐12.0 -‐17.0 -‐12.0 RvE1 -‐50.0 -‐10.0 -‐21.1 -‐10.0 RvE2 -‐30.0 -‐12.0 -‐18.6 -‐10.0 RvE3 -‐35.0 -‐10.0 -‐20.5 -‐14.0 5-‐HEPE -‐30.0 -‐10.0 -‐18.0 -‐9.5 12-‐HEPE -‐30.0 -‐10.0 -‐18.0 -‐9.5 15-‐HEPE -‐30.0 -‐10.0 -‐18.0 -‐9.5 18-‐HEPE -‐30.0 -‐10.0 -‐18.0 -‐9.5
DHA -‐10.0 -‐10.0 -‐10.0 -‐12.0 RvD1 -‐40.0 -‐10.0 -‐19.0 -‐9.0 RvD2 -‐40.0 -‐10.0 -‐27.8 -‐10.0 RvD3 -‐55.0 -‐10.0 -‐24.6 -‐9.5 RvD5 -‐42.0 -‐10.0 -‐18.0 -‐11.0 RvD6 -‐50.0 -‐10.0 -‐20.0 -‐11.0 MaR1 -‐38.0 -‐10.0 -‐19.6 -‐11.0 4,14-‐diHDHA -‐50.0 -‐10.0 -‐20.0 -‐11.0 PD1 -‐45.0 -‐10.0 -‐20.8 -‐9.5 4-‐HDHA -‐30.0 -‐10.0 -‐18.0 -‐9.5 7-‐HDHA -‐30.0 -‐10.0 -‐18.0 -‐9.5 14-‐HDHA -‐30.0 -‐10.0 -‐18.0 -‐9.5 17-‐HDHA -‐30.0 -‐10.0 -‐18.0 -‐9.5
d4-‐PGE2 -‐30.0 -‐10.0 -‐26.0 -‐14.0 d4-‐LXA4 -‐40.0 -‐10.0 -‐17.5 -‐7.5 d4-‐LTB4 -‐55.0 -‐10.0 -‐21.7 -‐10.0 d8-‐5S-‐HETE -‐40.0 -‐10.0 -‐24.0 -‐12.0 d5-‐RvD2 -‐40.0 -‐10.0 -‐20.3 -‐13.0
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Table 5: Mass Spectrometer sesngs for MulFple ReacFon Monitoring for AB Sciex 5500 Q TRAP. DP=Declustering PotenFal, EP=Entrance potenFal, CE=Collision Energy, CXP=Collision Cell Exit PotenFal
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Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Compound name Linear equaEon r2 Internal standard RvD1 y=0.00002081x 0.999 d5-‐RvD2 RvD2 y=0.00009118x 0.997 d5-‐RvD2 RvD3 y=0.000008163x 0.990 d5-‐RvD2 RvD5 y=0.00001137x 0.993 d4-‐LTB4 PD1 y=0.00001425x 0.995 d4-‐LTB4 MaR1 y=0.00007534x 0.999 d4-‐LTB4
17-‐HDHA y=0.00001132x 0.996 d8-‐5HETE 14-‐HDHA y=0.00001916x 0.999 d8-‐5HETE 7-‐HDHA y=0.00001096x 0.996 d8-‐5HETE 4-‐HDHA y=0.00001040x 0.996 d8-‐5HETE LXA5 y=0.00002043x 0.999 d5-‐LXA4 RvE1 y=0.00004358x 0.999 d5-‐LXA4 RvE2 y=0.0001647x 0.996 d4-‐LTB4 RvE3 y=0.0001047x 0.998 d4-‐LTB4
18-‐HEPE y=0.00002131x 0.998 d8-‐5HETE 15-‐HEPE y=0.00002002x 0.999 d8-‐5HETE 12-‐HEPE y=0.00001899x 0.997 d8-‐5HETE 5-‐HEPE y=0.00001301x 0.998 d8-‐5HETE LXA4 y=0.00001607x 0.996 d5-‐LXA4 LXB4 y=0.00007325x 0.995 d5-‐LXA4
5S,15S-‐diHETE y=0.00008011x 0.997 d4-‐LTB4 LTB4 y=0.00001074x 0.991 d4-‐LTB4
20-‐OH-‐LTB4 y=0.00001524x 0.999 d4-‐LTB4 20-‐COOH-‐LTB4 y=0.00007931x 0.999 d4-‐LTB4
PGD2 y=0.00001019x 0.993 d4-‐PGE2 PGE2 y=0.00001698x 0.998 d4-‐PGE2 PGF2α y=0.00001643x 0.997 d4-‐PGE2 TXB2 y=0.00001054x 0.997 d4-‐PGE2
15-‐HETE y=0.00001377x 0.999 d8-‐5HETE 12-‐HETE y=0.00001142x 0.994 d8-‐5HETE 5-‐HETE y=0.00001010x 0.990 d8-‐5HETE
Table 6: Linear equaFon, coefficient of determinaFon (r2) and aOributed internal standard
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Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Recovery (%) in plasma
Interference (% signal remaining)
LOD 5500 (pg) in
LOD 6500 (pg) in
Internal standards phase plasma phase plasma d5-‐RvD2 73 ± 16 28 ± 9 0.17 0.43 0.04 0.09 d5-‐LXA4 75 ± 2 7 ± 2 0.10 0.25 0.02 0.05 d4-‐LTB4 80 ± 3 18 ± 2 0.10 0.51 0.05 0.22 d4-‐PGE2 63 ± 13 21 ± 6 0.19 0.47 0.09 0.23 d8-‐5S-‐HETE 68 ± 3 28 ± 5 0.10 0.26 0.07 0.15 d5-‐authenEc lipid mediators d5-‐10S,17S-‐diHDHA 88 ± 4 8 ± 2 0.06 0.45 0.03 0.15 d5-‐5S,15S-‐diHEPE 94 ± 6 9 ± 5 0.13 0.95 0.03 0.15 d5-‐15-‐HEPE 63 ± 12 26 ± 4 0.09 0.23 0.10 0.19
Table 7: DeterminaFon of recovery, interference and LOD. Plasma recoveries, interference and limit of detecFon (LOD) of the internal standards and authenFc d5-‐lipid mediators used as representaFve of specific chromatographic regions and physical properFes of compounds. LOD was assessed in phase and in the matrix. Mean ± SEM, n = 6 for recoveries and interference, d = 3 for LOD.
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Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Compound name
Nominal concentraEon
(pg)
Intraday (repeatability) Interday (reproducibility)
Measured (pg) %RSD Accuracy Measured (pg) %RSD Accuracy RvD1 5 5.0 ± 0.1 1% 99% 4.6 ± 0.1 2% 92%
20 17.2 ± 0.7 7% 86% 23.2 ± 0.7 5% 84% 100 109.8 ± 2.2 4% 90% 118.5 ± 1.8 3% 82% 200 227.8 ± 2.5 2% 86% 233.5 ± 1.8 2% 83%
RvD2 5 5.2 ± 0.1 4% 96% 4.6 ± 0.1 4% 93% 20 16.9 ± 0.7 7% 85% 22.6 ± 0.5 4% 87% 100 113.0 ± 2.3 4% 87% 116.5 ± 1.6 3% 84% 200 227.8 ± 3.1 3% 86% 235.5 ± 2.5 2% 82%
RvD3 5 5.7 ± 0.1 3% 86% 5.4 ± 0.1 4% 91% 20 19.8 ± 0.5 4% 99% 26.0 ± 0.3 2% 70% 100 118.3 ± 1.4 2% 82% 125.3 ± 0.9 2% 75% 200 226.8 ± 2.2 2% 87% 226.8 ± 1.7 1% 87%
RvD5 5 4.8 ± 0.1 5% 97% 4.6 ± 0.04 2% 93% 20 16.7 ± 0.6 6% 83% 24.0 ± 0.3 2% 80% 100 114.3 ± 0.8 1% 86% 117.0 ± 0.0 0% 83% 200 217.0 ± 2.6 2% 92% 217.0 ± 2.4 2% 92%
PD1 5 4.6 ± 0.1 5% 93% 4.4 ± 0.05 2% 88% 20 16.7 ± 0.3 3% 84% 23.7 ± 0.5 4% 82% 100 114.0 ± 0.7 1% 86% 118.5 ± 1.0 2% 82% 200 218.5 ± 1.3 1% 91% 220.0 ± 1.3 1% 90%
MaR1 5 4.6 ± 0.2 9% 91% 4.2 ± 0.02 1% 85% 20 16.1 ± 0.1 1% 81% 22.3 ± 0.5 4% 89% 100 107.0 ± 3.5 7% 93% 110.8 ± 1.4 3% 89% 200 221.3 ± 2.3 2% 89% 229.0 ± 1.8 2% 86%
17-‐HDHA 5 3.5 ± 0.1 4% 69% 4.4 ± 0.05 2% 87% 20 17.8 ± 0.3 3% 89% 23.7 ± 0.8 6% 82% 100 115.0 ± 1.1 2% 85% 120.0 ± 0.6 1% 80% 200 222.0 ± 1.2 1% 89% 227.5 ± 1.6 1% 86%
14-‐HDHA 5 3.2 ± 0.1 5% 64% 4.3 ± 0.02 1% 86% 20 17.3 ± 0.4 4% 86% 22.2 ± 0.4 3% 89% 100 114.8 ± 2.4 4% 85% 109.5 ± 2.3 4% 91% 200 212.3 ± 2.3 2% 94% 233.5 ± 0.9 1% 83%
7-‐HDHA 5 3.5 ± 0.1 4% 70% 4.5 ± 0.1 3% 90% 20 19.7 ± 0.1 1% 99% 25.8 ± 0.4 3% 71% 100 123.8 ± 2.3 4% 76% 128.0 ± 2.5 4% 72% 200 236.5 ± 1.0 1% 82% 240.5 ± 2.4 2% 80%
4-‐HDHA 5 3.6 ± 0.1 6% 73% 4.6 ± 0.02 1% 91% 20 19.8 ± 0.3 2% 99% 26.0 ± 0.3 2% 70% 100 125.8 ± 2.0 3% 74% 128.5 ± 1.6 2% 72% 200 236.3 ± 2.1 2% 82% 240.3 ± 1.4 1% 80%
Table 8 (part 1/4): Precision and accuracy of LM metabololipidomics. %RSD, relaFve standard deviaFon; %RSD = (SEM/mean) x 100; mean ± SEM; n = 4
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Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Table 8 (part 2/4): Precision and accuracy of LM metabololipidomics. %RSD, relaFve standard deviaFon; %RSD = (SEM/mean) x 100; mean ± SEM; n = 4
Compound name
Nominal concentraEon
(pg)
Intraday (repeatability) Interday (reproducibility)
Measured (pg) %RSD Accuracy Measured (pg) %RSD Accuracy LXA5 5 5.6 ± 0.1 2% 87% 5.0 ± 0.1 4% 99%
20 18.0 ± 0.3 3% 90% 21.6 ± 0.7 6% 92% 100 111.0 ± 2.6 5% 89% 110.3 ± 1.9 3% 90% 200 212.3 ± 2.8 3% 94% 240.3 ± 3.3 3% 80%
RvE1 5 5.8 ± 0.1 4% 85% 5.1 ± 0.1 3% 99% 20 17.4 ± 0.1 1% 87% 24.3 ± 0.3 2% 78% 100 113.3 ± 2.3 4% 87% 121.8 ± 1.7 3% 78% 200 242.0 ± 3.7 3% 79% 241.8 ± 1.7 1% 79%
RvE2 5 5.5 ± 0.4 14% 91% 4.7 ± 0.1 3% 93% 20 16.4 ± 0.7 8% 82% 20.7 ± 0.7 6% 97% 100 108.8 ± 2.8 5% 91% 101.2 ± 2.9 6% 99% 200 199.3 ± 3.3 3% 100% 240.0 ± 1.1 1% 80%
RvE3 5 6.1 ± 0.3 8% 78% 5.0 ± 0.4 16% 99% 20 17.8 ± 1.7 17% 89% 23.7 ± 1.6 12% 81% 100 105.0 ± 3.0 6% 95% 116.5 ± 1.0 2% 84% 200 218.5 ± 3.4 3% 91% 227.8 ± 3.1 3% 86%
18-‐HEPE 5 4.1 ± 0.1 3% 82% 4.3 ± 0.03 2% 87% 20 17.6 ± 0.2 2% 88% 23.3 ± 0.5 4% 83% 100 117.5 ± 2.0 3% 83% 121.3 ± 1.5 2% 79% 200 239.0 ± 2.3 2% 81% 241.8 ± 1.5 1% 79%
15-‐HEPE 5 4.3 ± 0.1 3% 87% 4.4 ± 0.04 2% 88% 20 17.6 ± 0.2 2% 88% 22.8 ± 0.5 4% 86% 100 115.5 ± 2.5 4% 85% 122.3 ± 1.1 2% 78% 200 231.3 ± 1.7 1% 84% 239.3 ± 1.7 1% 80%
12-‐HEPE 5 4.6 ± 0.04 2% 93% 4.4 ± 0.1 3% 88% 20 18.1 ± 0.2 1% 91% 22.6 ± 0.4 3% 87% 100 122.5 ± 1.3 2% 78% 117.3 ± 1.7 3% 83% 200 231.3 ± 2.3 2% 84% 227.8 ± 1.3 1% 86%
5-‐HEPE 5 4.6 ± 0.05 2% 91% 4.6 ± 0.04 2% 92% 20 18.1 ± 0.2 2% 91% 23.4 ± 0.5 4% 83% 100 115.3 ± 1.3 2% 85% 119.5 ± 0.5 1% 81% 200 223.5 ± 2.0 2% 88% 233.3 ± 1.0 1% 83%
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Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Compound name
Nominal concentraEon
(pg)
Intraday (repeatability) Interday (reproducibility)
Measured (pg) %RSD Accuracy Measured (pg) %RSD Accuracy LXA4 5 5.5 ± 0.1 2% 90% 4.9 ± 0.1 4% 98%
20 17.7 ± 0.8 8% 88% 23.5 ± 0.1 1% 82% 100 114.0 ± 2.1 4% 86% 119.0 ± 1.1 2% 81% 200 226.3 ± 2.1 2% 87% 233.5 ± 1.5 1% 83%
LXB4 5 6.2 ± 0.1 4% 76% 5.4 ± 0.1 3% 92% 20 18.4 ± 0.6 6% 92% 22.9 ± 0.4 3% 85% 100 116.8 ± 1.7 3% 83% 114.5 ± 1.2 2% 86% 200 220.0 ± 4.5 4% 90% 231.8 ± 1.6 1% 84%
5S,15S-‐diHETE 5 5.1 ± 0.1 4% 98% 5.4 ± 0.1 2% 93% 20 20.3 ± 0.5 4% 98% 26.4 ± 0.2 1% 68% 100 123.3 ± 1.4 2% 77% 129.0 ± 2.0 3% 71% 200 246.5 ± 3.7 3% 77% 251.0 ± 6.1 5% 75%
LTB4 5 5.0 ± 0.03 1% 99% 5.8 ± 0.1 2% 84% 20 22.3 ± 0.3 2% 89% 27.5 ± 0.4 3% 63% 100 125.0 ± 0.6 1% 75% 130.0 ± 1.8 3% 70% 200 231.0 ± 3.2 3% 85% 226.8 ± 2.9 3% 87%
20-‐OH-‐LTB4 5 5.4 ± 0.1 4% 93% 4.9 ± 0.03 1% 98% 20 17.1 ± 0.5 6% 86% 22.6 ± 0.4 3% 87% 100 111.3 ± 2.7 5% 89% 116.0 ± 0.8 1% 84% 200 223.3 ± 1.1 1% 88% 229.0 ± 3.0 3% 86%
20-‐COOH-‐LTB4 5 5.1 ± 0.4 16% 99% 5.2 ± 0.1 2% 97% 20 18.0 ± 0.9 9% 90% 21.4 ± 1.6 13% 93% 100 117.5 ± 1.3 2% 83% 114.0 ± 2.2 4% 86% 200 227.3 ± 2.3 2% 86% 253.8 ± 3.4 3% 73%
PGD2 5 5.7 ± 0.1 2% 87% 5.2 ± 0.1 4% 96% 20 17.1 ± 0.2 2% 86% 22.8 ± 0.3 3% 86% 100 105.5 ± 2.3 4% 95% 115.5 ± 1.0 2% 85% 200 213.3 ± 3.1 3% 93% 218.3 ± 3.7 3% 91%
PGE2 5 5.5 ± 0.1 4% 90% 4.9 ± 0.2 6% 97% 20 18.0 ± 0.5 4% 90% 22.9 ± 0.9 7% 86% 100 116.8 ± 4.0 7% 83% 113.8 ± 2.3 4% 86% 200 206.5 ± 1.2 1% 97% 209.5 ± 4.6 4% 95%
PGF2α 5 5.5 ± 0.1 2% 90% 5.2 ± 0.1 3% 97% 20 19.2 ± 0.5 4% 96% 25.6 ± 0.4 3% 72% 100 120.3 ± 1.7 3% 80% 123.8 ± 1.1 2% 76% 200 233.3 ± 3.1 3% 83% 220.8 ± 0.9 1% 90%
TXB2 5 4.7 ± 0.2 7% 94% 5.0 ± 0.01 0.3% 100% 20 16.8 ± 0.8 8% 84% 22.2 ± 1.3 10% 89% 100 111.2 ± 4.1 7% 89% 118.0 ± 4.5 8% 82% 200 219.0 ± 3.6 3% 91% 189.5 ± 6.9 7% 95%
Table 8 (part 3/4): Precision and accuracy of LM metabololipidomics. %RSD, relaFve standard deviaFon; %RSD = (SEM/mean) x 100; mean ± SEM; n = 4
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Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Compound name
Nominal concentraEon
(pg)
Intraday (repeatability) Interday (reproducibility)
Measured (pg) %RSD Accuracy Measured (pg) %RSD Accuracy 15-‐HETE 5 4.1 ± 0.1 2% 82% 4.2 ± 0.05 2% 84%
20 16.6 ± 0.2 2% 83% 21.8 ± 0.4 3% 91% 100 109.3 ± 2.6 5% 91% 110.8 ± 1.3 2% 89% 200 212.8 ± 2.3 2% 94% 219.0 ± 0.8 1% 91%
12-‐HETE 5 4.5 ± 0.04 2% 89% 4.8 ± 0.04 2% 95% 20 17.7 ± 0.3 2% 89% 23.1 ± 0.6 4% 85% 100 113.8 ± 1.8 3% 86% 117.0 ± 1.1 2% 83% 200 216.5 ± 1.8 2% 92% 220.0 ± 1.7 2% 90%
5-‐HETE 5 4.9 ± 0.05 2% 97% 5.0 ± 0.1 4% 100% 20 20.3 ± 0.3 3% 98% 25.7 ± 0.3 2% 72% 100 125.0 ± 3.0 5% 75% 127.8 ± 1.4 2% 72% 200 232.5 ± 1.4 1% 84% 239.5 ± 4.7 4% 80%
Table 8 (part 4/4): Precision and accuracy of LM metabololipidomics. %RSD, relaFve standard deviaFon; %RSD = (SEM/mean) x 100; mean ± SEM; n = 4
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Day-‐0 Day-‐1 Day-‐2 Day-‐3 Day-‐4 Day-‐5 2-‐weeks 4-‐weeks DHA bioacEve metabolome Δ change (%) RvD1 49.5±1.3
with -‐1.0 -‐0.2 +3.2 -‐3.2 -‐1.1 without +0.8 -‐2.0 +2.4 -‐13.2 -‐15.5 -‐33.4 -‐56.8
RvD2 13.4±0.8 with -‐1.3 +1.1 +6.4 +2.3 +1.1
without -‐9.2 +2.5 +2.2 -‐1.2 -‐19.2 -‐39.5 -‐59.0 RvD3 68.5±7.5
with -‐3.1 +8.0 +6.6 -‐4.4 +6.0 without -‐6.8 -‐8.5 -‐3.3 -‐11.3 -‐12.6 -‐18.9 -‐25.4
RvD5 24.9±2.2 with +6.5 -‐10.5 -‐18.0 -‐8.4 -‐16.8
without -‐16.4 -‐14.8 -‐15.1 -‐20.2 -‐17.0 -‐38.7 -‐44.0 RvD6 21.6±2.0
with +1.7 +2.2 -‐1.1 +0.4 -‐11.8 without +4.6 -‐9.8 -‐12.5 -‐17.2 -‐14.3 -‐19.5 -‐85.3
PD1 6.1±0.1 with -‐3.0 +5.5 -‐8.3 -‐11.9 -‐10.4
without +6.7 +1.7 -‐18.3 -‐26.8 -‐23.7 -‐33.0 -‐36.7 MaR1 9.0±0.8
with +2.3 +0.9 -‐8.0 -‐6.5 -‐17.8 without -‐6.5 -‐2.5 -‐2.6 -‐15.7 -‐24.7 -‐67.9 -‐73.1
EPA bioacEve metabolome RvE1 13.1±0.9
with -‐3.3 -‐9.0 -‐13.9 -‐9.4 -‐13.1 without +7.6 -‐4.2 -‐22.0 -‐23.7 -‐24.6 -‐50.7 -‐57.1
RvE3 686.3±51.0 with -‐6.4 -‐7.6 -‐5.1 -‐7.2 -‐4.4
without -‐1.3 -‐5.2 -‐4.5 -‐3.5 -‐18.7 -‐40.9 -‐42.2 AA bioacEve metabolome LXA4 11.2±1.0
with 1.8 +0.5 -‐8.6 -‐8.3 -‐5.9 without 4.4 -‐3.8 -‐5.2 -‐5.7 -‐3.8 -‐14.4 -‐39.9
LXB4 117.6±2.6 with -‐1.7 -‐3.6 -‐1.9 +5.2 -‐5.5
without -‐1.3 -‐5.8 -‐3.6 -‐5.8 -‐11.3 -‐17.7 -‐57.1 PGD2 55.1±1.9
with +9.8 -‐6.8 +3.3 +3.7 -‐15.5 without +7.6 -‐2.8 +5.8 +2.1 -‐16.9 -‐10.9 -‐26.7
PGE2 199.2±10.2 with +3.7 -‐1.2 +0.1 -‐11.8 -‐15.6
without -‐6.2 -‐12.2 -‐14.3 -‐20.8 -‐15.3 -‐11.9 -‐29.8 PGF2a 143.3±2.5
with -‐0.4 -‐0.2 +1.2 +8.9 -‐13.6 without +8.0 +1.1 +1.6 +4.8 -‐9.0 -‐15.6 -‐34.1
TxB2 6067.0±128.4 with -‐5.2 -‐7.8 +7.4 -‐5.5 -‐12.5
without +9.2 -‐3.2 +7.3 -‐16.6 -‐19.2 -‐17.8 -‐34.2
Table 9: Human serum (250µl) was stored under -‐30°C with or without 1ml methanol. On the designated day (Day-‐0 to 4-‐weeks), LC-‐MS-‐MS based LM metabololipidomics were carried out. Results are expressed as pg/ml serum; mean ± SEM of d = 3 determinaFons and Δ change (%) from Day-‐0.
MulEple ReacEon Monitoring TransiEons
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Table 1: MRM transiFon for LC-‐MS-‐MS based metabololipidomics of AA, EPA and DHA derived lipid mediators.
Table 2: MRM transiFon for LC-‐MS-‐MS based metabololipidomics of AA and DHA derived aspirin-‐triggered lipid mediators.
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Compound Q1 Q3 Compound Q1 Q3
AA 303.3 259.1 15-‐HEPE 317.2 219.1 PGD2 351.3 233.2 18-‐HEPE 317.2 259.1 PGE2 351.3 175.1 PGF2α 353.3 193.1 DHA 327.3 283.1 TXB2 369.3 169.1 RvD1 375.2 215.2 LTB4 335.3 195.2 RvD2 375.2 141.2 LXA4 351.2 235.1 RvD3 375.2 147.1 LXB4 351.2 221.1 RvD5 359.2 199.1 5,15-‐diHETE 335.2 115.2 RvD6 359.2 159.1 5-‐HETE 319.2 115.1 MaR1 359.2 250.1 12-‐HETE 319.2 179.1 4,14-‐diHDHA 359.2 221.1 15-‐HETE 319.2 219.1 PD1 359.2 153.1
4-‐HDHA 343.2 101.1 EPA 301.3 257.1 7-‐HDHA 343.2 141.1 LXA5 349.2 215.1 14-‐HDHA 343.2 205.1 LXB5 349.2 221.2 17-‐HDHA 343.2 245.1 5,15-‐diHEPE 333.2 235.2 RvE1 349.2 195.1 d4-‐PGE2 355.3 193.2 RvE2 333.3 253.2 d5-‐LXA4 356.3 115.2 RvE3 333.3 201.1 d4-‐LTB4 339.3 197.2 5-‐HEPE 317.2 115.1 d8-‐5S-‐HETE 327.3 116.1 12-‐HEPE 317.2 179.1 d5-‐RvD2 380.2 141.2
Compound Q1 Q3 Compound Q1 Q3
AT-‐LXA4 351.2 235.1 AT-‐RvD3 375.2 147.1 AT-‐LXB4 351.2 221.1 AT-‐RvD5 359.2 199.1
AT-‐RvD6 359.2 159.1 AT-‐RvD1 375.2 215.2 AT-‐RvD2 375.2 141.2 AT-‐PD1 359.2 153.1
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
AddiEonal references:
Specific lipid mediator signatures of human phagocytes: microparFcles sFmulate macrophage efferocytosis and pro-‐resolving mediators. Dalli J, Serhan CN. Blood. 2012 120(15)
Metabolomics-‐lipidomics of eicosanoids and docosanoids generated by phagocytes. Yang R, Chiang N, Oh SF, Serhan CN. Curr Protoc Immunol. 2011 Chapter 14:Unit 14.26.
Table 3: MRM transiFon for LC-‐MS-‐MS based metabololipidomics of further metabolites of AA, EPA and DHA derived lipid mediators.
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Compound Q1 Q3 Compound Q1 Q3
20-‐OH-‐LTB4 351.2 195.1 Dihydro-‐RvD1 377.2 279.1 20-‐COOH-‐LTB4 365.2 195.1 7-‐oxo-‐RvD2 373.2 260.1 15-‐oxo-‐LXA4 349.2 233.1 16-‐oxo-‐RvD2 373.2 260.1 13,14-‐dihydro-‐LXA4 353.2 253.1 22-‐OH-‐RvD2 391.2 249.1 5-‐oxo-‐LXB4 349.2 219.1 Dihydro-‐RvD2 377.2 279.1
14-‐oxo-‐MaR1 357.2 221.1 18-‐oxo-‐RvE1 347.2 213.1 7-‐oxo-‐MaR1 357.2 219.1 19-‐OH-‐RvE1 365.2 205.1 22-‐OH-‐MaR1 375.2 177.1 20-‐OH-‐RvE1 365.2 291.1 22-‐COOH-‐MaR1 389.2 177.1 20-‐COOH-‐RvE1 379.2 237.1 Dihydro-‐MaR1 361.2 223.1 Dihydro-‐RvE1 351.2 225.1 22-‐OH-‐PD1 375.2 153.1
22-‐COOH-‐PD1 389.2 153.1 8-‐oxo-‐RvD1 373.2 231.1 Dihydro-‐PD1 361.2 263.1 17-‐oxo-‐RvD1 373.2 231.1
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
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Lipid Mediator BiosyntheEc Pathways
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Key eicosanoids that play pivotal roles in iniEaEng inflammaEon and its resoluEon.
AnF-‐Inflammatory and Pro-‐Resolving Lipid Mediators. Charles N. Serhan, Stephanie Yacoubian and Rong Yang Annu Rev Pathol. 2008 3: 279–312. PMCID: PMC2739396
BiosyntheEc scheme for the Prostaglandins, Leukotrienes and Lipoxins
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Resolvins and ProtecFns in InflammaFon-‐ResoluFon Charles N. Serhan, Nicos A. Petasis Chem Rev. 2011 12 111(10): 5922–5943. PMCID: PMC3192290
E-‐series resolvin biosynthesis and metabolic inacEvaEon.
BiosyntheEc scheme for the E-‐series Resolvins
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Resolvins and ProtecFns in InflammaFon-‐ResoluFon Charles N. Serhan, Nicos A. Petasis Chem Rev. 2011 12 111(10): 5922–5943. PMCID: PMC3192290
BiosyntheEc scheme for the D-‐series Resolvins
Pathways and enzymes in the biosynthesis of D-‐series resolvins.
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Resolvins and ProtecFns in InflammaFon-‐ResoluFon Charles N. Serhan, Nicos A. Petasis Chem Rev. 2011 12 111(10): 5922–5943. PMCID: PMC3192290
BiosyntheEc scheme for the aspirin triggered D-‐series Resolvins
Pathways and enzymes involved in the biosynthesis of aspirin-‐triggered D-‐series resolvins.
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Resolvins and ProtecFns in InflammaFon-‐ResoluFon Charles N. Serhan, Nicos A. Petasis Chem Rev. 2011 12 111(10): 5922–5943. PMCID: PMC3192290
Biosynthetic scheme for the Protectins
Pathways and enzymes involved in the biosynthesis of protecEn (PD1/NPD1) and 10S,17S-‐diHDHA.
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Maresins: novel macrophage mediators with potent anFinflammatory and proresolving acFons. Serhan CN, Yang R, Mar6nod K, Kasuga K, Pillai PS, Porter TF, Oh SF, Spite M. J Exp Med. 2009 206(1):15-‐23. PMCID: PMC2626672
BiosyntheEc scheme proposed for MaR1 and related products.
Biosynthetic scheme for the Maresins
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LC-‐MS-‐MS Spectra
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Arachidonic Acid Metabolome
Prostaglandins & Thromboxane
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PGD2
10.6
351=M-‐H 333=M-‐H-‐H2O 315=M-‐H-‐2H2O 289=M-‐H-‐H2O-‐CO2 271=M-‐H-‐2H2O-‐CO2 235=279-‐CO2 233=251-‐H2O 217=279-‐H2O-‐CO2 189=251-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
271
189
315
233
333
351 289 217 251 235
100 140 180 220 260 300 340 380 m/z, Da
+H 251 -‐H
279
HO
O
COO-
OH
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PGE2
10.5
351=M-‐H 333=M-‐H-‐H2O 315=M-‐H-‐2H2O 289=M-‐H-‐H2O-‐CO2 271=M-‐H-‐2H2O-‐CO2 243=279-‐2H2O 235=279-‐CO2 233=251-‐H2O 217=279-‐H2O-‐CO2 207=251-‐CO2 189=251-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
271
315 333
189
233 289 217 351 243
235
207 279
100 140 180 220 260 300 340 380 m/z, Da
+H 251 -‐H
279
O
HO
COO-
OH
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PGF2α
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
10.9
353=M-‐H 335=M-‐H-‐H2O 317=M-‐H-‐2H2O 299=M-‐H-‐3H2O 291=309-‐H2O 273=309-‐2H2O 263=281-‐H2O 235=253-‐H2O 219=281-‐H2O-‐CO2 217=253-‐2H2O 209=253-‐CO2 193=253-‐H-‐CH3-‐CO2 191=253-‐H2O-‐CO2 173=253-‐2H2O-‐CO2
253 209 281
353
309
335 291
317 273 299 191 219 235 173
217
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
HO
HO
COO-
OH
253 281
+H
-‐H
193
309
51/104
263
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TxB2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
10.1
369=M-‐H 333=M-‐H-‐2H2O 325=M-‐H-‐CO2 315=M-‐H-‐3H2O 307=M-‐H-‐H2O-‐CO2 289=M-‐H-‐2H2O-‐CO2 279=297-‐H2O 233=269-‐2H2O 195=213-‐H2O 189=269-‐2H2O-‐CO2 177=213-‐2H2O 151=169-‐H2O 133=169-‐2H2O 125=169-‐CO2
169
195
177
125 289
151 369 307
315 333 279 325 189 133 233
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
269 297
+H
-‐H
213
169
O
OH
HO
COO-
OH
52/104
297
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Arachidonic Acid Metabolome
Leukotrienes
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Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
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COO-
OHOH
LTB4
13.3
335=M-‐H 317=M-‐H-‐H2O 299=M-‐H-‐2H2O 291=M-‐H-‐CO2 273=M-‐H-‐H2O-‐CO2 255=M-‐H-‐2H2O-‐CO2 205=223-‐H2O 179=223-‐CO2 177=195-‐H2O 161=223-‐H2O-‐CO2 151=195-‐CO2 133=195-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
335
195
317
151 273 129
111 177 299 255 205
133 291 115
179
219 161
100 140 180 220 260 300 340 380 m/z, Da
115
219 -‐H
223
111 -‐H
+H 195
270
261 281 λmax
MeOH = 270 nm
ε = 40,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
270 230 250 290 210 330 310
54/104 Wavelength, nm
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© 2014 Serhan et al.
129
20-‐OH-‐LTB4
8.8
351=M-‐H 333=M-‐H-‐H2O 315=M-‐H-‐2H2O 289=M-‐H-‐H2O-‐CO2 271=M-‐H-‐2H2O-‐CO2 179=223-‐CO2 177=195-‐H2O 151=195-‐CO2 133=195-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
351
195
333
151 315 289 179 177
271 133 115
100 140 180 220 260 300 340 380 m/z, Da
COO-
OHOH
OH
270
261 281
λmaxMeOH = 270 nm
ε = 40,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
270 230 250 290 210 330 310
115 195
223 -‐H
+H
-‐H
55/104 Wavelength, nm
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Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
129
129
20-‐COOH-‐LTB4
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
7.75
365=M-‐H 347=M-‐H-‐H2O 329=M-‐H-‐2H2O 321=M-‐H-‐CO2 303=M-‐H-‐H2O-‐CO2 285=M-‐H-‐2H2O-‐CO2 205=223-‐H2O 177=195-‐H2O 161=223-‐H2O-‐CO2 151=195-‐CO2
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
365
347
151
329 303
285 141 161 205 249 177 321 115
195
100 140 180 220 260 300 340 380 m/z, Da
270
261 281
λmaxMeOH = 270 nm
ε = 40,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
270 230 250 290 210 330 310
115 195
223
141 -‐H
+H
-‐H 249
56/104 Wavelength, nm
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Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
129
129
COO-
COOH
OH OH
Arachidonic Acid Metabolome
Lipoxins
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LXA4
11.1
351=M-‐H 333=M-‐H-‐H2O 315=M-‐H-‐2H2O 307=M-‐H-‐CO2 289=M-‐H-‐H2O-‐CO2 271=M-‐H-‐2H2O-‐CO2 261=279-‐H2O 233=251-‐H2O 217=235-‐H2O 215=251-‐2H2O 207=251-‐CO2 199=235-‐2H2O 189=251-‐H2O-‐CO2 127=145-‐H2O
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
115 351
217
235
289 189 271
307 333 315 251 207 127 145 233 261 215 199
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
115
+H
235
-‐H -‐H 145
251
279 -‐H
COO-
HO OH
OH
301
288
315
λmaxMeOH = 301 nm
ε = 50,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
260 280 300 320 340 240 360 380
58/104 Wavelength, nm
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LXB4
10.5
351=M-‐H 333=M-‐H-‐H2O 315=M-‐H-‐2H2O 307=M-‐H-‐CO2 297=M-‐H-‐3H2O 289=M-‐H-‐H2O-‐CO2 271=M-‐H-‐2H2O-‐CO2 261=279-‐H2O 243=279-‐2H2O 233=251-‐H2O 217=235-‐H2O 215=251-‐2H2O 207=251-‐CO2 203=221-‐H2O 189=251-‐H2O-‐CO2 177=221-‐CO2 159=221-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
351
221
315
233
333
189 251 207 271 203 177
159 289 297 215
243 307 261 217 115
100 140 180 220 260 300 340 380 m/z, Da
279 251
-‐H 221
115
235
+H
-‐H
+H
COO-
OH
HO OH
301
288
314
λmaxMeOH = 301 nm
ε = 50,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
260 280 300 320 340 240 360 380
59/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
13.0
5S,15S-‐diHETE
335=M-‐H 317=M-‐H-‐H2O 299=M-‐H-‐2H2O 291=M-‐H-‐CO2 273=M-‐H-‐H2O-‐CO2 255=M-‐H-‐2H2O-‐CO2 227=263-‐2H2O 217=235-‐H2O 201=219-‐H2O 191=235-‐CO2 173=235-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
255
317
335
173
201
115
273 235
299 217
191 291
227 219
100 140 180 220 260 300 340 380 m/z, Da
COO-
OH
OH
219
235
115
-‐H +H
263
-‐H
244
λmaxMeOH = 244 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
60/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Arachidonic Acid Metabolome
MonoHydroxyETE Products
61/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
5-‐HETE
16.4
319=M-‐H 301=M-‐H-‐H2O 275=M-‐H-‐CO2 257=M-‐H-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
257
319
301
115
203
275
100 140 180 220 260 300 340 380 m/z, Da
115 232
-‐H
203
-‐H
COO-
OH
236
λmaxMeOH = 236 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
232
62/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
12-‐HETE
15.9
319=M-‐H 301=M-‐H-‐H2O 275=M-‐H-‐CO2 257=M-‐H-‐H2O-‐CO2 163=207-‐CO2 145=207-‐H2O-‐CO2 135=179-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
319
179 257
301
135
163 275
145
207
100 140 180 220 260 300 340 380 m/z, Da
-‐H 207
+H
179
COO-
OH
236
λmaxMeOH = 236 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
63/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
15-‐HETE
15.6
319=M-‐H 301=M-‐H-‐H2O 275=M-‐H-‐CO2 257=M-‐H-‐H2O-‐CO2 203=247-‐CO2 175=219-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
319
301
257
175
219
203 275
247
100 140 180 220 260 300 340 380 m/z, Da
219 +H
247
-‐H
COO-
OH
236
λmaxMeOH = 236 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
64/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Eicosapentaenoic Acid Metabolome
Lipoxins
65/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
LXA5
10.2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
349=M-‐H 331=M-‐H-‐H2O 313=M-‐H-‐2H2O 305=M-‐H-‐CO2 287=M-‐H-‐H2O-‐CO2 269=M-‐H-‐2H2O-‐CO2 217=279-‐H2O-‐CO2 215=233-‐H2O 207=251-‐CO2 189=251-‐H2O-‐CO2 171=251-‐2H2O-‐CO2
100 140 180 220 260 300 340 380 m/z, Da
301
288
315 λmax
MeOH = 301 nm
ε = 50,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
260 280 300 320 340 240 360 380
349
COO-
OH
HO OH
115
+H
233 -‐H -‐H
145
251 279
-‐H
215 233
115
269 287
305 313
331 145 251
189
207 217 171
66/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
-‐H
5S,15S-‐diHEPE
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
333
100 140 180 220 260 300 340 380 m/z, Da
COO-
OH
OH
246 115 217
-‐H
235
+H -‐H 263
246
115
217
235
315
297
289
271
253 199
333=M-‐H 315=M-‐H-‐H2O 297=M-‐H-‐2H2O 289=M-‐H-‐CO2 271=M-‐H-‐H2O-‐CO2 253=M-‐H-‐2H2O-‐CO2 245=263-‐H2O 219=263-‐CO2 201=263-‐H2O-‐CO2 199=217-‐H2O 191=235-‐CO2 173=235-‐H2O-‐CO2
191
173
219
201
245
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
244
λmaxMeOH = 244 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
12.2
67/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Eicosapentaenoic Acid Metabolome
E-‐Series Resolvins
68/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
RvE1
349=M-‐H 331=M-‐H-‐H2O 313=M-‐H-‐2H2O 305=M-‐H-‐CO2 295=M-‐H-‐3H2O 287=M-‐H-‐H2O-‐CO2 273=291-‐H2O 269=M-‐H-‐2H2O-‐CO2 255=291-‐2H2O 229=291-‐H2O-‐CO2 205=223-‐H2O 187=223-‐2H2O 179=223-‐CO2 177=195-‐H2O 161=223-‐H2O-‐CO2 151=195-‐CO2 133=195-‐H2O-‐CO2
291
195
223
115
+H
+H
-‐H
-‐H
8.3
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
349
195
331
161
205
291 313 179 287 273
187 151 295 115 255 229 177 305 269
100 140 180 220 260 300 340 380 m/z, Da
271
262 282 λmax
MeOH = 271 nm
ε = 40,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
270 230 250 290 210 330 310
237
69/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
COO-
HO
OH
OH
11.9
RvE2
333=M-‐H 315=M-‐H-‐H2O 297=M-‐H-‐2H2O 289=M-‐H-‐CO2 271=M-‐H-‐H2O-‐CO2 257=275-‐H2O 253=M-‐H-‐2H2O-‐CO2 231=275-‐CO2 213=275-‐H2O-‐CO2 199=217-‐H2O 173=217-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
333
271
213 253
115 315
199
275 297
257 289 231 217 173
100 140 180 220 260 300 340 380 m/z, Da
115 217 -‐H
275
+H
COO-
HO
OH
243
λmaxMeOH = 243 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
70/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
RvE3
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
303 275
-‐H 245 +H
+H
333
315
297
289
271
253
245
201
275
257
231
213
259
333=M-‐H 315=M-‐H-‐H2O 297=M-‐H-‐2H2O 289=M-‐H-‐CO2 271=M-‐H-‐H2O-‐CO2 259=303-‐CO2 257=275-‐H2O 253=M-‐H-‐2H2O-‐CO2 231=275-‐CO2 213=275-‐H2O-‐CO2 201=245-‐CO2
270
260 281 λmax
MeOH = 270 nm
ε = 40,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
250 270 290 310 230 330
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
13.2
71/104
COO-
HO OH
Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Eicosapentaenoic Acid Metabolome
MonoHydroxyEPE Products
72/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
5-‐HEPE
15.4
317=M-‐H 299=M-‐H-‐H2O 273=M-‐H-‐CO2 255=M-‐H-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
255
317 115
201 299
273
100 140 180 220 260 300 340 380 m/z, Da
115 201
-‐H
COO-
OH
236
λmaxMeOH = 236 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
73/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
12-‐HEPE
15.0
317=M-‐H 299=M-‐H-‐H2O 273=M-‐H-‐CO2 255=M-‐H-‐H2O-‐CO2 189=207-‐H2O 163=207-‐CO2 145=207-‐H2O-‐CO2 135=179-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
317
273 145 109
179
255
135
299 163
207
189
100 140 180 220 260 300 340 380 m/z, Da
179 +H
207 -‐H
COO-
OH
236
λmaxMeOH = 236 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
74/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
15-‐HEPE
14.8
COO-
OH -‐H
247 219
+H
317=M-‐H 299=M-‐H-‐H2O 273=M-‐H-‐CO2 255=M-‐H-‐H2O-‐CO2 229=247-‐H2O 203=247-‐CO2 185=247-‐H2O-‐CO2 175=219-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
317
255
219 175
299
247
203 273
185 229
100 140 180 220 260 300 340 380 m/z, Da
237
λmaxMeOH = 237 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
75/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
18-‐HEPE
14.7
317=M-‐H 299=M-‐H-‐H2O 273=M-‐H-‐CO2 255=M-‐H-‐H2O-‐CO2 243=287-‐CO2 215=259-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
317
255
215
299
259
273
243
100 140 180 220 260 300 340 380 m/z, Da
259
+H
287 -‐H
COO-
OH
236
λmaxMeOH = 236 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
76/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Docosahexaenoic Acid Metabolome
D-‐Series Resolvins
77/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
RvD1
11.1
375=M-‐H 357=M-‐H-‐H2O 339=M-‐H-‐2H2O 331=M-‐H-‐CO2 313=M-‐H-‐H2O-‐CO2 295=M-‐H-‐2H2O-‐CO2 261=305-‐CO2 259=277-‐H2O 243=305-‐H2O-‐CO2 241=277-‐2H2O 215=233-‐H2O 197=233-‐2H2O 185=203-‐H2O 153=171-‐H2O 135=171-‐2H2O 127=171-‐CO2 123=141-‐H2O
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
215
375
233
141
135
277 357 171 295 331
313 123 197 259 339 241 153 127 185 243
113
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
COO-
HO
OH
HO
141
233 -‐H
+H 277
171 -‐H
113 +H
-‐H
305
203
301
288
316
λmaxMeOH = 301 nm
ε = 50,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
260 280 300 320 340 240 360 380
78/104
261
Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
COO-
HO
OH
OH
RvD2
10.6
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
375
128
277
295
233 357 339 197 203
313 331 185
215
110 321
375=M-‐H 357=M-‐H-‐H2O 339=M-‐H-‐2H2O 331=M-‐H-‐CO2 321=M-‐H-‐3H2O 313=M-‐H-‐H2O-‐CO2 295=M-‐H-‐2H2O-‐CO2 287=305-‐H2O 259=277-‐H2O 241=277-‐2H2O 215=233-‐H2O 203=247-‐CO2 197=233-‐2H2O 185=247-‐H2O-‐CO2 110=128-‐H2O
233
+H 247
277 +H
305
-‐H
-‐H 262
128 -‐H
301
288
315
λmaxMeOH = 301 nm
ε = 50,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
260 280 300 320 340 240 360 380
287
259
241
79/104
141 -‐H
141
247
Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
RvD3
277 +H
195
181 165
209 -‐H
+H
101 -‐H
375
147
137
357 165 215 181 277 313 295 259 159 177
339 101 191
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 m/z, Da
375=M-‐H 357=M-‐H-‐H2O 339=M-‐H-‐2H2O 313=M-‐H-‐H2O-‐CO2 295=M-‐H-‐2H2O-‐CO2 259=277-‐H2O 215=277-‐H2O-‐CO2 191=209-‐H2O 177=195-‐H2O 159=195-‐2H2O 147=165-‐H2O 137=181-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
10.8
80/104
220 240 260 280 300 320 200
Rel. Abs. (%)
100%
0%
271
λmaxMeOH = 271 nm
ε = 40,000 abs.L/mol.
281 260
234
Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
OH
HO
COO-HO
COO-
HO
HO
141
-‐H 289
+H
+H 246
113
261
-‐H
-‐H
217
RvD5
13.0
359=M-‐H 341=M-‐H-‐H2O 323=M-‐H-‐2H2O 315=M-‐H-‐CO2 297=M-‐H-‐H2O-‐CO2 279=M-‐H-‐2H2O-‐CO2 245=289-‐CO2 243=261-‐H2O 228=246-‐H2O 227=289-‐H2O-‐CO2 199=217-‐H2O
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
199
279 359
141 341 297
246 261 217
113 228
245 315 323
227
243
100 140 180 220 260 300 340 380 m/z, Da
242
λmaxMeOH = 242 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
81/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
RvD6
359=M-‐H 341=M-‐H-‐H2O 315=M-‐H-‐CO2 297=M-‐H-‐H2O-‐CO2 279=M-‐H-‐2H2O-‐CO2 245=289-‐CO2 243=261-‐H2O 239=257-‐H2O 227=289-‐H2O-‐CO2 217=261-‐CO2 209=289-‐2H2O-‐CO2 199=261-‐H2O-‐CO2
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
359
341
315
297
279
289
261
101
257
239
243
217
199
245
227
101
257
-‐H
+H 261
-‐H 289
209
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
240
λmaxMeOH = 240 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
13.4
82/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
OH
OH
-OOC
Docosahexaenoic Acid Metabolome
Maresins
83/104
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Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
OHOH
COO-
MaR1
250 113
246 -‐H
221
+H
+H 141 -‐H
13.1
359=M-‐H 341=M-‐H-‐H2O 323=M-‐H-‐2H2O 315=M-‐H-‐CO2 297=M-‐H-‐H2O-‐CO2 279=M-‐H-‐2H2O-‐CO2 232=250-‐H2O 228=246-‐H2O 203=221-‐H2O 177=221-‐CO2 159=221-‐H2O-‐CO2 123=141-‐H2O
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
359
177
250 297
123 341
228 113 246 221 315 232 279
141 323
203 159
100 140 180 220 260 300 340 380 m/z, Da
270
261 281
λmaxMeOH = 270 nm
ε = 40,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
270 230 250 290 210 330 310
84/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
13.6
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
244
λmaxMeOH = 244 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
4S,14S-‐diHDHA
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
359
341
100 140 180 220 260 300 340 380 m/z, Da
297
279
101
221
138 109 323 315
239
213 203
187
159
177
359=M-‐H 341=M-‐H-‐H2O 323=M-‐H-‐2H2O 315=M-‐H-‐CO2 297=M-‐H-‐H2O-‐CO2 279=M-‐H-‐2H2O-‐CO2 239=257-‐H2O 231=249-‐H2O 213=249-‐2H2O 203=221-‐H2O 187=249-‐H2O-‐CO2 177=221-‐CO2 159=221-‐H2O-‐CO2
231
COO-
OH
OH
249 -‐H
221 +H
101
-‐H
257
-‐H 138
109
85/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Docosahexaenoic Acid Metabolome
ProtecEns
86/104
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Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
PD1
13.0
COO-
OH
OH
153
206 -‐H
+H
-‐H
+H
177 181
261
359=M-‐H 341=M-‐H-‐H2O 323=M-‐H-‐2H2O 315=M-‐H-‐CO2 297=M-‐H-‐H2O-‐CO2 279=M-‐H-‐2H2O-‐CO2 243=261-‐H2O 217=261-‐CO2 199=261-‐H2O-‐CO2 188=206-‐H2O 159=177-‐H2O 137=181-‐CO2 119=181-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
153
359
137
206
297 188
341 261 217
159 323 315
199 119 177
181 279 243
100 140 180 220 260 300 340 380 m/z, Da
270
261 281 λmax
MeOH = 270 nm
ε = 40,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
250 270 290 310 230 330
87/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Docosahexaenoic Acid Metabolome
MonoHydroxyDHA Products
88/104
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Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
4-‐HDHA
16.7
343=M-‐H 325=M-‐H-‐H2O 299=M-‐H-‐CO2 281=M-‐H-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
343
281
101
299
325
241
100 140 180 220 260 300 340 380 m/z, Da
101 241 -‐H
COO-
OH
235
λmaxMeOH = 235 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
89/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
7-‐HDHA
16.1
343=M-‐H 325=M-‐H-‐H2O 299=M-‐H-‐CO2 281=M-‐H-‐H2O-‐CO2 123=141-‐H2O
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
281
343
201
141
325
299 113
123 230
100 140 180 220 260 300 340 380 m/z, Da
141 201
113 113
230 -‐H
+H
-‐H
COO-
OH
236
λmaxMeOH = 236 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
90/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
14-‐HDHA
15.9
343=M-‐H 325=M-‐H-‐H2O 299=M-‐H-‐CO2 281=M-‐H-‐H2O-‐CO2 215=233-‐H2O 189=233-‐CO2 161=205-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
343
281
161
325 205
299
233
189
215
100 140 180 220 260 300 340 380 m/z, Da
233 -‐H
205 +H
COO-
OH
237
λmaxMeOH = 237 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
91/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
17-‐HDHA
15.7
343=M-‐H 325=M-‐H-‐H2O 299=M-‐H-‐CO2 281=M-‐H-‐H2O-‐CO2 255=273-‐H2O 229=273-‐CO2 211=273-‐H2O-‐CO2 201=245-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
343
255 211
281
201
325 245
299
229 273
100 140 180 220 260 300 340 380 m/z, Da
-‐H 273
+H 245
COO-
OH
236
λmaxMeOH = 236 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
92/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Aspirin-‐Triggered Special Pro-‐resolving Mediators
93/104
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Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
AT-‐LXA4
11.3
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
351
115
217
235
189 289 307
271 333 315
233
127
251 199 145
171 279 215
207 243 261
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
351=M-‐H 333=M-‐H-‐H2O 315=M-‐H-‐2H2O 307=M-‐H-‐CO2 289=M-‐H-‐H2O-‐CO2 271=M-‐H-‐2H2O-‐CO2 261=279-‐H2O 243=279-‐2H2O 233=251-‐H2O 217=235-‐H2O 215=251-‐2H2O 207=251-‐CO2 199=235-‐2H2O 189=251-‐H2O-‐CO2 171=251-‐2H2O-‐CO2 127=145-‐H2O
100 140 180 220 260 300 340 380 m/z, Da
COO-
HO OH
OH
115
+H
235
-‐H -‐H 145
251
279 -‐H
301
288
315
λmaxMeOH = 301 nm
ε = 50,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
260 280 300 320 340 240 360 380
94/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
AT-‐LXB4
11.1
351=M-‐H 333=M-‐H-‐H2O 315=M-‐H-‐2H2O 307=M-‐H-‐CO2 297=M-‐H-‐3H2O 289=M-‐H-‐H2O-‐CO2 271=M-‐H-‐2H2O-‐CO2 261=279-‐H2O 243=279-‐2H2O 233=251-‐H2O 217=235-‐H2O 215=251-‐2H2O 207=251-‐CO2 203=221-‐H2O 189=251-‐H2O-‐CO2 177=221-‐CO2 159=221-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
351
221
315
233
333
189 251 207 271 203 177
159 289 297 215
243 307 261 217 115
100 140 180 220 260 300 340 380 m/z, Da
301
288
314
λmaxMeOH = 301 nm
ε = 50,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
260 280 300 320 340 240 360 380
95/104 Wavelength, nm
279 251
-‐H 221
115
235
+H
-‐H
+H
COO-
OH
HO OH
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
AT-‐RvD1
11.2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
375=M-‐H 357=M-‐H-‐H2O 339=M-‐H-‐2H2O 331=M-‐H-‐CO2 313=M-‐H-‐H2O-‐CO2 295=M-‐H-‐2H2O-‐CO2 261=305-‐CO2 259=277-‐H2O 243=305-‐H2O-‐CO2 241=277-‐2H2O 215=233-‐H2O 197=233-‐2H2O 185=203-‐H2O 153=171-‐H2O 135=171-‐2H2O 127=171-‐CO2 123=141-‐H2O
215
375
233
141
135
277
185 127 357 171 295 331
113 313 123 197
153 259 339 241
243 0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
COO-
HO
OH
HO
141
233 -‐H
+H 277
171 -‐H
113 +H
-‐H
305
203
301
288 316
λmaxMeOH = 301 nm
ε = 50,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
260 280 300 320 340 240 360 380
96/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
AT-‐RvD3
375=M-‐H 357=M-‐H-‐H2O 339=M-‐H-‐2H2O 313=M-‐H-‐H2O-‐CO2 295=M-‐H-‐2H2O-‐CO2 259=277-‐H2O 215=277-‐H2O-‐CO2 191=209-‐H2O 177=195-‐H2O 159=195-‐2H2O 147=165-‐H2O 137=181-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
10.5
97/104
220 240 260 280 300 320 200
Rel. Abs. (%)
100%
0%
271
λmaxMeOH = 271 nm
ε = 40,000 abs.L/mol.
281 260
234
375
147
137
357 165 215 181 277 313 295 259 159 177
339 101 191
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 m/z, Da
Wavelength, nm
277 +H
195
181 165
209 -‐H
+H
101 -‐H
HO
COO-
OH
HO
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
COO-
OH
OH
AT-‐PD1
12.4
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
270
261 281 λmax
MeOH = 270 nm
ε = 40,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
250 270 290 310 230 330
359=M-‐H 341=M-‐H-‐H2O 323=M-‐H-‐2H2O 315=M-‐H-‐CO2 297=M-‐H-‐H2O-‐CO2 279=M-‐H-‐2H2O-‐CO2 243=261-‐H2O 217=261-‐CO2 199=261-‐H2O-‐CO2 188=206-‐H2O 159=177-‐H2O 137=181-‐CO2 119=181-‐H2O-‐CO2 109=153-‐CO2
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
153
359
137
206
297 188
341 261 217
159 323 315
199 119 177
181 279 243
100 140 180 220 260 300 340 380 m/z, Da
98/104 Wavelength, nm
153
206 -‐H
+H
-‐H
+H
177 181
261
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
Deuterium Labeled Internal Standards
99/104
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Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
d4-‐PGE2
+H 255 -‐H
283
O
HO
COO-
OH
D D
D D
275
319 337
193
239 211 355 293
237
283
355=M-‐H 337=M-‐H-‐H2O 319=M-‐H-‐2H2O 293=M-‐H-‐H2O-‐CO2 275=M-‐H-‐2H2O-‐CO2 239=283-‐CO2 237=255-‐H2O 211=255-‐CO2 193=255-‐H2O-‐CO2
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
10.4
Rel. Int. (%
)
100/104
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
COO-
HO OH
OH
D D
D
D
D
d5-‐LXA4
10.1
356=M-‐H 320=M-‐H-‐2H2O 312=M-‐H-‐CO2 294=M-‐H-‐H2O-‐CO2 276=M-‐H-‐2H2O-‐CO2 233=251-‐H2O 222=240-‐H2O 189=251-‐H2O-‐CO2
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
356
115
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
115
+H
240
-‐H
251
301
288
315
λmaxMeOH = 301 nm
ε = 50,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
260 280 300 320 340 240 360 380
320 312
294
276 251
240
233
222
189
101/104 Wavelength, nm
-‐H 145
145
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
d4-‐LTB4
COO-
OHOH
D
D
D D
142
197 113
225 -‐H
+H 223
115 -‐H -‐H
339=M-‐H 321=M-‐H-‐H2O 303=M-‐H-‐2H2O 295=M-‐H-‐CO2 277=M-‐H-‐H2O-‐CO2 259=M-‐H-‐2H2O-‐CO2 207=225-‐H2O 205=223-‐H2O 181=225-‐CO2 179=197-‐H2O 163=225-‐H2O-‐CO2 153=197-‐CO2 135=197-‐H2O-‐CO2 124=142-‐H2O
339
197
321
153 277 207 181
115 303 259 163 124 135 295 142
113 205 179 0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
270
261 281 λmax
MeOH = 270 nm
ε = 40,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
270 230 250 290 210 330 310 0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
13.1
Rel. Int. (%
)
102/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
d8-‐5S-‐HETE
COO-
OH
D D D D
D D D D
116 210
-‐H 327
309 116 265
210
283
327=M-‐H 309=M-‐H-‐H2O 283=M-‐H-‐CO2 265=M-‐H-‐H2O-‐CO2
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
236
λmaxMeOH = 236 nm
ε = 25,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
220 230 240 250 270 210 280 290 260
16.2
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
Rel. Int. (%
)
103/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
d5-‐RvD2
10.6
Rel. Int. (%
)
0%
50%
100%
2 4 6 8 10 12 14 16 18 20 22
Time, min
0
380
0%
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
Rel. Int. (%
)
100 140 180 220 260 300 340 380 m/z, Da
301
288
315
λmaxMeOH = 301 nm
ε = 50,000 abs.L/mol.
Rel. Abs. (%)
0%
50%
100%
260 280 300 320 340 240 360 380
362
104/104 Wavelength, nm
Prof. Charles N. SERHAN Laboratory Brigham & Women’s Hospital Center for Experimental TherapeuFcs and Reperfusion Injury Harvard Medical School
Lipid Mediator Metabololipidomics LC-‐MS-‐MS Spectra Book 2014
© 2014 Serhan et al.
COO-
OH
HO
OH
D
D D
DD
380=M-‐H 362=M-‐H-‐H2O 344=M-‐H-‐2H2O 336=M-‐H-‐CO2 318=M-‐H-‐H2O-‐CO2 300=M-‐H-‐2H2O-‐CO2 259=277-‐H2O 241=277-‐2H2O 215=277-‐CO2-‐H2O 185=247-‐H2O-‐CO2
238
+H 247
277 +H
133 -‐H
141 -‐H
344 336 318
300
141 277
133 113
113 +H
247 238
259 241
215
185