linked data, publication, and the life cycle of ... · linked data, publication, and the life cycle...
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Linked Data, Publication, and
the Life Cycle of
Archaeological Information
Unless otherwise indicated, this work is licensed under a Creative Commons
Attribution 3.0 License <http://creativecommons.org/licenses/by/3.0/>
Eric C. Kansa (@ekansa) UC Berkeley D-Lab
& Open Context
2014-2015 Harvard Center for Hellenic
Studies & German Archaeological
Institute Research Fellow
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Data Sharing as Publication
• Started in 2007
• Open data (mainly CC-By)
• Archiving by California Digital Library
• Part of a broader reform movement in scholarly communications
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Introduction
Reforming scholarly communications 1. Why Linked Data?
2. Challenges of (Linked) Data in academic settings
3. Case studies in integrating Linked Data in research communication
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Introduction
Reforming scholarly communications 1. Why Linked Data?
2. Challenges of (Linked) Data in academic settings
3. Case studies in integrating Linked Data in research communication
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Web of Data (2011)
Need Archaeology on the Map
Contributions should not be isolated from other communities
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Image Credit: Wikimedia Commons (CC-BY-SA) http://en.wikipedia.org/wiki/Bootstrapping#mediaviewer/File:Dr_Martens,_black,_old.jpg
Bootstrapping Problem • Benefits mainly theoretical until
you get lots of Linked Data
• Need research community with skill sets to use Linked Data
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Stable Web URI: Reference this to disambiguate
between “Alexandria” (Egypt) and
other places called “Alexandria”
(many of which are also ancient)
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Pelagios: Heat map of museum collections,
archives, databases referencing
places in Pleiades (PIs Leif Isaksen, Elton Barker)
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Perio.do • Gazetteer of assertions about “periods”
(place-time entities)
• Not a controlled vocabulary, but Linked Data friendly way to author and reference scholarly assertions about periods
• NEH funded (PIs Adam Rabinowitz, Ryan Shaw, Eric Kansa)
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Introduction
Reforming scholarly communications 1. Why Linked Data?
2. Challenges of (Linked) Data in academic settings
3. Case studies in integrating Linked Data in research communication
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Commercial interests and
public policy
Conditions of
academic labor
Neoliberalism: (Loosely associated ideologies /
assumptions / interests)
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Source: The Occasional Pamphlet - Harvard University
(http://blogs.law.harvard.edu/pamphlet/2013/01/29/why-open-access-is-better-for-scholarly-societies/)
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Conditions of
academic labor
Neoliberalism: (Loosely associated ideologies /
assumptions / interests)
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Neoliberalism:
Taylorism,
“Audit Culture” and fierce
job/grant competition
Data contributions don’t
count!
Image Credit: Wikimedia Commons (Public Domain) http://en.wikipedia.org/wiki/Frederick_Winslow_Taylor#mediaviewer/File:Frederick_Winslow_Taylor_crop.jpg
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Ironies of data: Publications counted as data,
but data don’t count!
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Contingent Employment
Source: Washington Monthly (http://ecleader.org/2012/02/21/nation-wide-trend-towards-
adjuncts-threatens-higher-ed/)
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My Precious Data
Image Credit: “Lord of the Rings” (2003, New Line), All Rights Reserved Copyright
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Need more carrots!
1. Citation, credit, intellectually valued
2. Research outcomes (new insights from data reuse!)
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Introduction
Reforming scholarly communications 1. Why Linked Data?
2. Challenges of (Linked) Data in academic settings
3. Case studies in integrating Linked Data in research communication
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1. Referenced by US National Science Foundation and National Endowment for the Humanities for Data Management
2. “Data sharing as publishing” metaphor
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Need to consider the wider research community (inside & outside universities)
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Digital Index of North American Archaeology (DINAA)
1. ~ 500,000 site records curated by state officials
2. Key (Linked Data!) reference for N. American archaeology
3. PIs/Co-PIs: David G. Anderson, Joshua Wells, Eric Kansa, Sarah Kansa, Stephen Yerka
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Digital Index of North American Archaeology (DINAA)
1. Rich metadata (cultures, chronology, site-types)
2. Reduced precision location data (site security, legal)
3. Data modeling challenges (using GeoJSON-LD, CIDOC-CRM, event models)
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Using site
file data to
examine the
impacts of
sea level rise
In 100 years,
19,676 sites will
be covered!
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DINAA to help
“bootstrap” a linked
data ecosystem for
North American
archaeology
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EOL Computable Data Challenge
(Ben Arbuckle, Sarah W. Kansa, Eric Kansa)
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Large scale data sharing & integration for exploring the origins of farming.
Funded by EOL / NEH
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1. 300,000 bone specimens
2. Complex: dozens, up to 110 descriptive fields
3. 34 contributors from 15 archaeological sites
4. More than 4 person years of effort to create the data !
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Relatively collaborative bunch, Ben Arbuckle cultivated relationships & built trust over years prior to EOL funding.
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Raw Data: Idiosyncratic, sometimes highly coded, often inconsistent
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Raw Data Can Be Unappetizing
See DIPIR study: http://dipir.org
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Sometimes data is better served cooked
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Publishing Workflow
Improve / Enhance
1. Consistency
2. Context (intelligibility, interoperability)
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- Documentation
- Review, editing
- Annotation
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- Documentation
- Review, editing
- Annotation
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“Ovis orientalis” http://eol.org/pages/311906/
Code: 14
Wild
sheep
Code: 70
Code: 16
Ovis orientalis
Code: 15
Sheep,
wild
O.
orientalis
Sheep
(wild)
- Documentation
- Review, editing
- Annotation
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“Sheep/goat” http://eol.org/pages/32609438/
1. Needed to mint new concepts like “sheep/goat”
2. Vocabularies need to be responsive + dynamic, esp. for multidisciplinary uses
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Linking to UBERON 1. Needed a controlled vocabulary for
skeletal anatomy
2. Better data modeling than common in zooarchaeology, adds quality
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Linking to UBERON 1. Models links between anatomy,
developmental biology, and genetics
2. Unexpected links between the Humanities and Bioinformatics!
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7000 BC (many pigs, cattle)
7500 BC (sheep + goat dominate, few pigs, few cattle)
6500 BC (few pigs, mixing with wild animals?)
8000 BC (cattle, pigs,
sheep + goats)
• Not a neat model of progress to adopt a more productive
economy. Very different, sometimes piecemeal adoption in
different regions.
Arbuckle BS, Kansa SW, Kansa E, Orton D, Çakırlar C, et al. (2014) Data Sharing Reveals
Complexity in the Westward Spread of Domestic Animals across Neolithic Turkey. PLoS ONE
9(6): e99845. doi:10.1371/journal.pone.0099845
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Easy to Align
1. Animal taxonomy
2. Skeletal elements
3. Sex determinations
4. Side of the animal
5. Fusion (bone growth, up to a point)
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Hard to Align (poor modeling, recording)
1. Tooth wear (age)
2. Fusion data
3. Measurements
Despite common research methods!!
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Professional expectations for data reuse
1. Need better data modeling (than feasible with, cough, Excel)
2. Data validation, normalization
3. Requires training & incentives for researchers to care more about the quality of their data!
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Data are challenging!
1. Decoding takes 10x longer
2. Data management plans should also cover data modeling, quality control (esp. validation)
3. More work needed modeling research methods (esp. sampling)
4. Editing, annotation requires lots of back-and-forth with data authors
5. Data needs investment to be useful!
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One does not simply
walk into Mordor
Academia and share
usable data…
Image Credit: Copyright Newline Cinema
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Final Thoughts
Data require intellectual investment, methodological and theoretical innovation.
Institutional structures are poorly configured to support data-powered research.
New professional roles needed, but who will pay for it?
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Thank you!
Special Thanks!
Harvard Center for Hellenic Studies & the German Archaeological Institute (DAI)