linepig: developing a taxonomic reference using collections-management systems

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LinEpig: Developing a taxonomic reference using collections-management systems

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Page 1: LinEpig: Developing a taxonomic reference using collections-management systems

LinEpig:

Developing a taxonomic reference using collections-management

systems

Page 2: LinEpig: Developing a taxonomic reference using collections-management systems
Page 3: LinEpig: Developing a taxonomic reference using collections-management systems

ErigoninaeLinyphiidae is the 2nd-most speciose spider

family in the world, and it has the most genera.

The erigonines account for 90% of linyphiid diversity. North America has more than 120 erigonine genera – 42% of them monotypic – and over 650 species.

Page 4: LinEpig: Developing a taxonomic reference using collections-management systems

Stylish male Erigone atrarepresenting the subfamily at Wikipedia

Spiders of North America: An Identification Manual, 2005

Page 5: LinEpig: Developing a taxonomic reference using collections-management systems
Page 6: LinEpig: Developing a taxonomic reference using collections-management systems

Intended use:

Subverted use:

But spider ID reference was not really what Picasa was meant for…

Page 7: LinEpig: Developing a taxonomic reference using collections-management systems

And now Picasa was going away.

The images in Google+ were better – but they were no longer presented in a useful way.

Page 8: LinEpig: Developing a taxonomic reference using collections-management systems

But there were also other things we couldn’t do even on the old Picasa

Erigonines in Cooliris display, David Shorthouse ispiders.blogspot.com December 2008

Page 9: LinEpig: Developing a taxonomic reference using collections-management systems

The Nearctic Spider

Database, RIP

(2007-2010)

Page 10: LinEpig: Developing a taxonomic reference using collections-management systems

And palps … but now we had the Leica with automontage

and that created new possibilities

Ceratinopsis nigriceps by N. Dupérré, 2003

Page 11: LinEpig: Developing a taxonomic reference using collections-management systems

And by this point, the Field Museum had acquired a collection-management system

This created the possibility of re-creating LinEpig as a custom-built, taxonomically rich resource in its proper home at the museum.

Page 12: LinEpig: Developing a taxonomic reference using collections-management systems

Authors

Moving in…

First nameLast nameYear bornYear diedID

TaxaGenusSpeciesParent taxonAuthor(s)YearID

ImagesSpeciesSexAnatomyViewCreatorInstitutionID

SpecimenDateLocationHabitatCollection methodCollected byDet asDet byInstitutionID

Page 13: LinEpig: Developing a taxonomic reference using collections-management systems

Authors

291 =>

Page 14: LinEpig: Developing a taxonomic reference using collections-management systems

Some of them required a bit of disambiguation

Page 15: LinEpig: Developing a taxonomic reference using collections-management systems

Taxa

4,474 =>

Page 16: LinEpig: Developing a taxonomic reference using collections-management systems

The result

4474 linyphiid taxa =>

291 linyphiid authors =>

241 LinEpig images =>

<= specimen info will go here, with a field for the institution

Page 17: LinEpig: Developing a taxonomic reference using collections-management systems

Say something – but briefly

Page 18: LinEpig: Developing a taxonomic reference using collections-management systems

Say something – but briefly

Page 19: LinEpig: Developing a taxonomic reference using collections-management systems

Say something – but briefly

Page 20: LinEpig: Developing a taxonomic reference using collections-management systems

Which is great for collections, when you know you’re looking for, and want to see if we have it. It’s not so helpful for the mystery specimen in your dish…

What you want is one of those mug books like the police have, so you can identify your suspect

Page 21: LinEpig: Developing a taxonomic reference using collections-management systems

The New LinEpig

DEMO: http://bit.ly/LinEpigdemo

YOUR COMMENTS:

http://bit.ly/LinEpigfeedback

This is a shared Google doc in which you can all make comments right now, simultaneously, as we look at the demo, or later, on your own.

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One thing I haven’t added yet is the locality info. We have better data than what was in Picasa

It will be up to GBIF standards

EOL map based on GBIF Linyphiidae occurrence records eol.org/pages/8781/maps

Page 27: LinEpig: Developing a taxonomic reference using collections-management systems

<= Go to MCZ collection record

Page 28: LinEpig: Developing a taxonomic reference using collections-management systems

The specimen record in MCZbase

Page 29: LinEpig: Developing a taxonomic reference using collections-management systems

What do we want to build?

<=Equipment

<=Code

Spiders =>

Page 30: LinEpig: Developing a taxonomic reference using collections-management systems

• Internal links/filters

• External links

• Info enrichment

Ways to make LinEpig more useful

Page 31: LinEpig: Developing a taxonomic reference using collections-management systems

Internal links/filters

• Show larger/research view of image

• Show all species of this genus

• Show all species by this author

• Select states or regions

• Select certain genera

Example:

Page 32: LinEpig: Developing a taxonomic reference using collections-management systems

External links

• Lending institution’s specimen record

• Link to species page in World Spider Catalog

• Link to species page in BOLD, GBIF, etc.

http://www.wsc.nmbe.ch/species/14755/Ceraticelus_bulbosus

http://www.boldsystems.org/index.php/TaxBrowser_TaxonPage?taxon=Ceraticelus+bulbosus

Examples:

Page 33: LinEpig: Developing a taxonomic reference using collections-management systems

Information enrichment

• Literature references

• More info on authors

• Descriptive narrative, possibly for genus

• Character coding (eg, has epigynal atrium)

Grammonota tends to have an abdominal chevron

Li Shuqiang is at the Chinese Academy of Sciences’ Institute of Zoology in Beijing

Examples:

Page 34: LinEpig: Developing a taxonomic reference using collections-management systems

Things to consider

• How effort much would it take?

• Is it something someone else is already doing, or should be doing, or could do better? (the classic cybertaxonomy dilemma)

• Should the effort go into imaging more of the Erigoninae?

Page 35: LinEpig: Developing a taxonomic reference using collections-management systems

Data issues

• Data rights issues

• Contributed images

• Accuracy issues

• Updates and maintenance

Gnathonarium famelicum palp & epigynum by D. Buckle, 2011

Example:

Page 36: LinEpig: Developing a taxonomic reference using collections-management systems

What are your thoughts?

DEMO: http://bit.ly/LinEpigdemo

YOUR COMMENTS:

http://bit.ly/LinEpigfeedback

This is a shared Google doc in which you can make comments at any time.

Page 37: LinEpig: Developing a taxonomic reference using collections-management systems

Thank you Field Museum colleagues

• Petra Sierwald, arachnids & myriapods• Corrie Moreau, Stephanie Ware, Robin Delapena,

Alexandra Westrich, and everybody at our Collaborative Invertebrate Lab and Moreau Ant Lab

• Sharon Grant, technology liaison to science• Pete Herbst, web & database specialist

Page 38: LinEpig: Developing a taxonomic reference using collections-management systems

Thank you friends and supporters

• Norman Platnick, World Spider Catalog 2000-14• David Shorthouse, Nearctic Spider Database• My linyphiid elders and mentors Rod Crawford, Mike

Draney, Robert Edwards, Don Buckle• LinEpig contributors Paula Cushing, Rich Bradley,

Rick Vetter, Tom Prentice, GB Edwards, Marc Milne, Derek Sikes & Brandi Fleshman, Jim Steffen, Claudia Copley & Derek Copley, Gonzalo Giribet & Laura Leibensperger

• Lee Sandlin

Page 39: LinEpig: Developing a taxonomic reference using collections-management systems

Nina SandlinSpiders - ZoologyThe Field Museum1400 South Lake Shore Drive Chicago, IL 60605-2496 USA [email protected]

llinepig.fieldmuseum.org

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