last lecture where do nadh and fadh 2 come from?? glycolysis and citric acid cycle ecb 14-10
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Last lecture
Where do NADH and FADH2 come from?? Glycolysis and Citric Acid Cycle
ECB 14-10
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Lecture 8
Citric acid cycle = Tricarboxylic acid (TCA) cycle = Krebs cycle
* Glycolysis
Anaerobic pathways
Catabolism of other carbon sources
Regulation of catabolic pathways
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Metabolic webMetabolic web
Glycolysis(in cytosol)
Citric Acid Cycle(in mitochondrial matrix)
Stage 1 polymers to monomers
Stage 2Monomers to acetyl CoAYields limited ATP and NADH
Stage 3Oxidation of acetyl CoA to CO2
Yields lots of NADH for respiration
Catabolic pathways yieldingenergy and building blocks
ECB 13-2
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Energy must be released in small steps to be useful to cell
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Glucose (6 Carbons)
Three phases:Three phases:
2 Pyruvate (2 X 3 carbons) + energy
Glycolysis overview
1. Input of energy (3 steps)
2. Cleavage of the 6-carbon molecule to 2 3-carbon molecules (2 steps)
3. Energy producing steps (5 steps)
ECB 13-3
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fructose6-phosphate6 carbon
Phosphoglucose isomerase(6 member ring to 5 member ring)
ATP ADP
Hexokinase
glucose6 carbon
Glucose6-phosphate6 carbon
(Phosphorylation)
Phosphofructokinase
fructose1,6-bisphosphate6 carbon
ATP ADP
(Phosphorylation)
Glycolysis - phase 1 - input of energy Panel 13-1
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fructose1,6-bisphosphate6 carbon
Aldolase
Triose isomerase
Dihydroxyacetonephosphate
3 carbon
Glyceraldehyde3-phosphate
3 carbon
Glycolysis - phase 2 - cleavage of the 6-carbon compound into two 3-carbon
compounds
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Glyceraldehyde3-phosphate3 carbon
Glyceraldehyde 3-phosphate dehydrogenase
Phosphoglycerate kinase
Phosphoglyceromutase
Enolase
Pyruvate kinase
1,3-bisphosphoglycerate3 carbon
3-phosphoglycerate3 carbon
2-phosphoglycerate3 carbon
phosphoenolpyruvate3 carbon
pyruvate3 carbon
NAD+ NADHPi
ADP ATP
ADP ATP
Glycolysis - phase 3 - Energy-producing steps
Structures in Panel 13-1
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Energy conversions in steps 6 & 7
Don’t need to know structures or enzymes, but know energy conversions
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Three phases:
1. Input of energy (3 steps)
2. Cleavage of the 6-carbon cmpd to 2 3-carbon cmpds (2 steps)
3. Energy producing steps (5 steps)
1 6-Carbon (glucose) to 1 6-carbon (fructose 1,6-bisphosphate)
2 ATP used
1 6-carbon (fructose 1,6-bisphosphate) to 2 3-carbon(Glyceraldehyde 3-phosphate)
2 3-carbon (glyceraldhyde 3-phosphate) to 2 3-carbon (pyruvate)1 NADH and 2 ATP per 3C compound2 NADH and 4 ATP total
Net yield: 2 NADH + 2 ATP
No energy use/production
Glycolysis - energy yield
Know this for exam!
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* Citric acid cycle = Tricarboxylic acid (TCA) cycle = Krebs cycle
Glycolysis
Lecture 8
Anaerobic pathways
Catabolism of other carbon sources
Regulation of catabolic pathways
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Summary of Citric Acid Cycle (mitochondrial matrix)
Pyruvate imported into mitochondria under aerobic conditions
acetyl CoA enters TCA cycleacetyl CoA enters TCA cycle
Converted to acetyl CoAConverted to acetyl CoA
acetyl CoA oxidized to COacetyl CoA oxidized to CO22
Energy captured as Energy captured as NADH (FADHNADH (FADH22, GTP), GTP)ECB 13-7
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In mitochondrial matrix
Pyruvate dehydrogenase
complex
NAD+ NADH
CO2
CoA
Pyruvate to acetyl CoA
3-carbon pyruvate
Acetyl CoA2 carbon
See ECB 13-8
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Acetyl CoAAcetyl CoA
ATP
Adenine
Riboseacetyl
Acetyl CoA structure
ECB 3-37
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Input: 2-carbon acetyl CoA
Circular pathway (“cycle”) composed of 8 steps
2 acetyl groups completely oxidized to 2 CO2
Overview of Citric Acid Cycle
Yields 3 NADH, 1 FADH2, and 1 GTP per acetyl CoA
Fig. 13-11
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Citric Acid Cycle
Panel 13-2
See movie on CD
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Structure of GTPStructure of GTP
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8 steps that generate a circular path (“cycle”)
“our city is kept safe and sound from menaces”
Summarize Citric Acid Cycle
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Glycolysis and TCA cycle completely oxidize glucose
to CO2 and H2O
Energy is stored as reducing power (NADH, FADH2), high energy phosphate bonds (ATP, GTP) and covalent bond energy (CO2, H2O)
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Glycolysis: glucose to 2 pyruvate:
Pyruvate dehydrogenase step:
Glucose (6C) to 2 pyruvate (2 X 3C)
Pyruvate (3C) to Acetyl CoA (2C)
2 NADH + 2 ATP per glucose
1 NADH per pyruvate2 NADH per glucose
Citric Acid Cycle:Acetyl CoA (2C) to 2 CO2
3 NADH + 1 FADH + 1 GTP per Acetyl CoA
6 NADH + 2 FADH + 2 GTP per glucose
Combined: 10 NADH + 2 FADH + 4 ATP
Complete Oxidation of Glucose: energy yield
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4
4 2
2
2
2
FADH2
2 e-
Each NADH and FADH2 donates 2 e- tomitochondrial e- transport chain
Recall 10 H+ moved per NADH, 6 H+ per FADH2
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Per glucose: 10 NADH + 2 FADH + 4 ATP per glucose
ATP Synthase: 4 H+ per ATP
NADH: 10 H+ per NADH So: 2.5 ATP per NADH
10 NADH X 2.5 ATP/NADH = 25 ATP
FADH2:6 H+ per FADH2So 1.5 ATP per FADH2 FADH X 1.5 ATP/FADH = 3 ATP
1 glucose = 25 ATP (NADH) + 3 ATP (FADH) + 4 ATP = 32 ATP
Bookkeeping of ATP yield
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Efficiency of glycolysis and respiration
G gly + resp = -686 Kcal/mol
Make 32 ATPHydrolysis of 1 ATP yields 7.4 to 11 kcal/mol32 X 7.4 = 237 kcal/mol are captured in ATP
Minimum efficiency 237/686 ~ .35 or 35% of total energyreleased is captured(Maximum 352/686 = .51 or 51%)
E = W + q (much energy is lost as heat)
(32 X 11 = 352)
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Energy conversions from glycolysis to oxidative phosphorylation
Glycolysis - covalent bond energy of glucose is convertedto bond energy of pyruvate and ATP, plus reducing powerin NADH
Citric Acid Cycle - bond energy of acetyl CoA is convertedto bond energy of CO2 and GTP, plus reducing power of NADHand FADH2
Electron transport - reducing power of NADHand FADH2 is converted to electrochemical gradient of H+
Oxidative phosphorylation - electrochemical gradient of H+ isconverted to bond energy of ATP
Respiration
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Lecture 8Lecture 8
Citric Acid Cycle
Glycolysis
*Anaerobic pathways
Catabolism of other carbon sources
Regulation of catabolic pathways
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4
4 2
2
2
2
FADH2
2 e-
Mitochondrial e- transport stops in the absence of
O2
Oxygen is the terminal electron acceptor
What happens?
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Purpose of anaerobic metabolism is to regenerate NAD+
Anaerobic metabolism-fermentation
Muscle Yeast
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Lecture 8Lecture 8
Citric Acid Cycle
Glycolysis
Anaerobic pathways
*Catabolism of other carbon sources
Regulation of catabolic pathways
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Proteins as C source
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Energy stored as polysaccharide and lipids
Glycogen (similar to starch)Glycogen (similar to starch)
ECB 13-18
Triacylglycerol (fat or oil)Triacylglycerol (fat or oil)
ECB 13-9
Glucose catabolized by glycolysis
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FA shorter by FA shorter by 2 carbons; repeat2 carbons; repeat
pathwaypathway
Energy from Energy from oxidationoxidation
Fatty Acid catabolized by -oxidation(cyclic pathway)
Energy from oxidationEnergy from oxidationof alcohol to ketoneof alcohol to ketone
Split off Split off AcetylCoAAcetylCoA
(to TCA cycle)(to TCA cycle)
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Glycolysis and Citric Acid Cycle Provide the Building Blocks for Biosynthesis (Anabolic
pathways)
ECB 13-23
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Chloroplasts and mitochondria act together to provide metabolites and
energy
Chloroplast exports sugars, not ATP or NADPHMitochondrion exports ATP
ECB 13-22
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Global carbon cycle
ECB 3-11
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CO2 levels are rising
Vostok ice core CO2 record
Petit et al. (1999) Nature 399:429
Industrial revolutionIce ages
Rise in CO2 does not cause rise in photosynthesis due to other limitations (e. g. nutrients)
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Greenhouse effect
CH4
CO2
CO2
CH4
CO2
CH4
CH4
CO2
CO2
CH4
CO2
CH4
CO2 CO2
CO2
CO2
CO2
CO2
incoming
outgoing
C=0 absorbs IR radiated by Earth after solar heating; predict atmosphere is warming
Solar radiation
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Global temperatures
IPCC (2001)
Last 1000 years
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Reservoirs of CO2
buffer Photosynthesis and respiration
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Most of the CO2 fluxes are from biological sources
fossil fuels6.3
-92.590.8
Respiration &decomposition118.6
net ocean exchange
GrossPrimary
Production(Photosynthesis)
-120
net terrestrialexchange
-1.4
atmospheric increase 3.2
-1.7
1990s Global Carbon Cycle Fluxes (Gt C yr -1)
Burning of fossil fuels takes net balance from negative to positive (emission)
Can discriminate CO2 from fossil fuels from other sources (resp.) by its isotopic composition (C13, C14)
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Seasonal variation in atmospheric CO2 levels
Low CO2 at height of summer in northern hemisphereTime of maximum photosynthesis
Seasonal variation in photosynthesis and respiration in temperate zone
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Seasonal variation in CO2 is limited to northern hemisphere
Land mass of Earth is mainly in northern hemisphere,hence variation in photosynthesis and respiration are magnified