Supplemental Figure S1. Relationship between marker order and genetic distances of the 13 component maps to the tetraploid consensus map. Component maps are reported as projection plots (Y values) on the consensus map (X values) for all chromosomes. Spearman rank correlations are reported as ro (r) values for each linkage group.

A HIGH-DENSITY, SNP-BASED CONSENSUS MAP OF TETRAPLOID WHEAT AS A BRIDGE TO INTEGRATE DURUM AND BREAD WHEAT GENOMICS AND BREEDING

Marco Maccaferri1§, Andrea Ricci1, Silvio Salvi1, Sara Giulia Milner1, Enrico Noli1, Pier Luigi Martelli2, Rita Casadio2, Eduard Akhunov3, Simone Scalabrin4, Vera Vendramin4, Karim Ammar5, Antonio Blanco6, Francesca Desiderio7, Assaf Distelfeld8, Jorge Dubcovsky9, Tzion Fahima10, Justin Faris11, Abraham Korol10, Andrea Massi12, Anna Mastrangelo13, Michele Morgante4, Curtis Pozniak14, Steven Xu11, Roberto Tuberosa1

1Department of Agricultural Science (DipSA), Viale Fanin 44, University of Bologna, 40127 Bologna, Italy2Biocomputing Group, Via Selmi 3, University of Bologna, 40126 Bologna, Italy3Department of Plant Pathology, Kansas State University, Manhattan, Kansas 665064Istituto di Genomica Applicata, c/o Parco Scientifico e Tecnologico L. Danieli, 33100 Udine, Italy and University of Udine, Dipartimento di Scienze Agrarie e Ambientali, 33100 Udine, Italy5CIMMYT Carretera Mexico-Veracruz km 45, 56130 Texcoco, Mexico6Dipartimento di Biologia e Chimica Agro-forestale ed ambientale, Università di Bari, Aldo Moro, Via Amendola 165/A, 70126 Bari, Italy7Consiglio per la ricerca e la sperimentazione in agricoltura, Genomics Research Centre, Via San Protaso 302, 29017 Fiorenzuola d'Arda, Italy8Faculty of Life Sciences, Dept. of Molecular Biology and Ecology of Plants, Tel Aviv University, 69978 Tel Aviv, Israel9Department of Plant Sciences, University of California, Davis, CA 95616, USA, and Howard Hughes Medical Institute, Chevy Chase, MD 2081510Department of Evolutionary and Environmental Biology, Institute of Evolution, Faculty of Science and Science Education, University of Haifa, Mt. Carmel, 31905 Haifa, Israel11USDA-ARS Cereal Crops Research Unit, NCSL 1605 Albrecht Blvd. N., Fargo, 58102-2765 ND, USA 12Società Produttori Sementi Bologna (PSB), Via Macero 1, 40050 Argelato, Italy13Consiglio per la ricerca e la sperimentazione in agricoltura, Cereal Research Centre, SS16 km 675, 71122 Foggia, Italy14Crop Development Centre and Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada

Kf x

Sv

Kf x

UC1

113

Cl x

Ld

Mr x

Cd

Chromosome

1A 1B 2A 2B 3A 3B 4A 4B 5A 5B 6A 6B 7A 7B

Mh

x Cr

Sv x

Cc

G95

86Sm

x Lv

Chromosome

1A 1B 2A 2B 3A 3B 4A 4B 5A 5B 6A 6B 7A 7B

Lt x

MG

_532

3Ln

x G

16-1

8Sv

x Z

vBn

x P

I_40

125

Sm x

Ml

Chromosome

1A 1B 2A 2B 3A 3B 4A 4B 5A 5B 6A 6B 7A 7B

Chr. Kf x Sv Kf X UC Cl X Ld Mr X Cd Sm X Lv Mh X Co Cc X Sv G9586 Bn X PI Sm X Ml Lt X MG Ln X G18-16 Sv X Zv

1A 0.906 0.973 0.954 0.984 0.923 0.919 0.959 0.958 0.977 0.993 0.994 0.432 0.996

1B 0.993 0.985 0.997 0.958 0.971 0.949 0.946 0.968 0.993 0.994 0.995 0.970 0.998

2A 0.707 - 0.994 0.886 0.990 0.898 0.945 0.977 0.988 0.988 0.988 0.958 0.994

2B 0.912 0.737 0.989 0.985 0.976 0.969 0.966 0.935 0.941 0.998 0.988 0.979 0.999

3A 1.000 0.931 0.990 0.990 0.979 0.961 0.984 0.874 0.981 0.997 0.996 0.955 0.999

3B 0.845 0.953 0.960 0.993 0.960 0.995 0.958 0.958 0.977 0.997 0.997 0.981 0.994

4A 0.972 0.976 0.930 0.978 0.963 0.933 0.983 0.931 0.921 0.990 0.991 0.974 0.985

4B 0.799 0.942 0.991 0.995 0.971 0.967 0.977 0.972 0.967 0.994 0.999 0.986 0.998

5A 0.945 0.607 0.971 0.984 0.985 0.983 0.993 0.874 0.989 0.978 0.998 0.962 0.998

5B 0.887 0.965 0.979 0.974 0.985 0.986 0.992 0.962 0.990 0.981 0.985 0.983 0.996

6A 0.988 0.971 0.979 0.971 0.936 0.975 0.966 0.650 0.946 0.996 0.990 1 0.988

6B 0.976 0.985 0.998 0.984 0.994 0.987 0.958 0.982 0.991 0.987 0.992 0.978 0.997

7A 0.970 1 0.945 0.980 0.994 0.972 0.996 0.719 0.980 0.990 0.996 0.820 0.995

7B 0.980 0.983 0.997 0.971 0.995 0.954 0.971 0.974 0.986 0.991 0.998 0.714 0.994

Spearman rank correlations of marker order between linkage groups of single maps and the consensus map