jodi humann, stephen ficklin, taein lee, chun-huai cheng, jill wegrzyn, david neale and dorrie main...
TRANSCRIPT
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Jodi Humann, Stephen Ficklin, Taein Lee, Chun-Huai Cheng, Jill Wegrzyn, David Neale and Dorrie Main
A web-based platform for genome annotation
GenSAS PosterP1153, Monday, 3-4:30 PM
Genome Sequence Annotation Server
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http://gensas.bioinfo.wsu.edu/
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GenSAS welcome tab provides users with a quick overview of what each of the three screen sections do.
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Each tab has an instructions section at the top that explains the function and use of the tab.
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The addition of support files increase the accuracy of the
annotation and curation
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Clicking on Job Name shows user more details and allows for download of raw output files and logs
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• Decide which set(s) of masking data will be included in consensus by opening WebApollo through link on right
• Masking step can also be skipped
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Consensus masking job is added to Job Queue and the details list which sets of masking data were included.
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• Settings for each tool can be adjusted
• Job Names for each tool can be changed to allow users to run the same tool with different settings under one project
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• GenSAS provides some standard transcript and protein databases• Databases added by user under Files step will also be
available for use here
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• Job status can be monitored through Job Queue
• Progress through GenSAS is automatically saved
• Users can log off GenSAS and jobs will continue running
• While jobs are running, users can look at the completed results in WebApollo/JBrowse
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GenSAS exports data in GFF3 and FASTA formats
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Supported by
- NRSP 10