jefferson county smp updatejefferson county smp update exhibit b. bibliography of scientific and...

Jefferson County SMP Update

Exhibit B. Bibliography of Scientific and Technical Information Considered

1 10,000 Years Institute. 2004. Integrated Population and Environmental Baseline Evaluation for Bull Trout,

Lower Hoh River. Prepared for Jefferson County Public Works Department. July 2004.2 54th Joint Western Fish Disease Workshop & AFS Fish health Section Meeting. 2013. Port Townsend,

Washington.

3 Abbe, T. B., and D. R. Montgomery. 1996. Large woody debris jams, channel hydraulics, and habitat

formation in large rivers . Regulated Rivers: Research & Management. 12:201-221.4 Abbe, T. B., and D. R. Montgomery. 2003. Patterns and processes of wood debris accumulation in the

Queets River Basin, Washington. Geomorphology, 51:81-107.5 Abbe, T. B., Pess, G., Montgomery, D. R., and K. L. Fetherston. 2003. Integrating Engineered Log Jam

Technology into River Rehabilitation . In D. R. Montgomery, S. Bolton, D. B. Booth, and L. Wall (eds)

Restoration of Puget Sound Rivers, 443-482.6 Abt, S.R., W.P. Clary, and C.I. Thorton. 1994. Sediment deposition and entrapment in vegetated streambeds.

In: Proceedings of the American Society of Civil Engineers, Irrigation and Drainage Division 120:1098-1111.

7 Adams, M.J. 1999. Correlated factors in amphibian decline: Exotic species and habitat change in Western

Washington. Journal of Wildlife Management 63(4): 1162-1171.8 Admin. April 2011. Montana Hutterite colonies diving into commercial salmon farming / fresh Alaska

salmon. www.alaskafreshsalmonm.com/2011/04/15/montana-hutterite-colonies-diving-into-commercial-

salmon-farming-3/ 3 pp.

9 Admiralty Audubon Society. 1990. Jefferson County Significant Natural Areas Vol. 1. East Jefferson. Port

Townsend, Washington.10 Alberti, M. et al. 2006. The impact of urban patterns on aquatic ecosystems: An empirical analysis in Puget

lowland sub-basins. Article in Press: Landscape Urban Planning. doi: 10.1016/jlandurbplan.2006.08.0.

www.elsevier.com/locate/landurbplan

11 Allan, J.D. 2004. Landscapes and riverscapes: the influence of land use on stream ecosystems. Annual

Review of Ecology, Evolution and Systematics 35: 257-284.12 Alvarez, D. 2011. Outline of '86 "Recommended Interim Guidelines for the Management of Salmon Net Pen

(aqua) Culture". 7 pp.13 Alvarez, D. April 11, 2011. Summary 1990 Final EIS; Finfish - Final Programmatic EIS-Jan. 1990 Table 1

Summarized by DA. 4 pp.14 American Gold Seafoods, LLC. January 2010. NPDES Pollution Prevention Plan. 4 pp.

15 Amos, K. 2003. Disease Interactions in Wild and Atlantic Salmon [slideshow]; Pacific States Marine Fisheries

Council Conference. 59 pp.16 Amos, K.H. and Appleby, A. September 1999. Atlantic Salmon in Washington State: A fish management

perspective. Washington Department of Fish and Wildlife. 13 pp.17 ApendiX a (Excerpt from "ISAV Surveillance Needs and Proposed Plan for the Pacific Northwest United

States" dated march 10, 2012).

18 Aquaculture Quick Facts - with attached list of Issues 1 through 6 summary of content. 6 pp.

19 Aquaculture Siting Study. October 1986. Prepared by EDAW Inc. and CH2M/Hill for WA Dept. of Ecology.

104 pp.20 AquaOptima RAS. www.aquaoptima.com 3 pp.

21 Azous, A.L. and K.O. Richter. 1995. Amphibian and plant community responses to changing hydrology in

urban wetlands . Pages 156-162 in E. Robichaud (ed.), Puget Sound Research 1995 Proceedings, Volume 1.

Olympia, WA: Puget Sound Water Quality Authority.

Note: The citations below were considered, but any conclusions/findings within those citations were not necessarily

incorporated into the final SMP.

1 of 43



22 Azous, Amanda L. and Richard R. Horner, 1997. Wetlands and Urbanization: Implications for the Future.

Final Report of the Puget Sound Wetlands and Stormwater Management Research Program. Available on

the internet at http://splash.metrokc.gov/wlr/basins/weturban.htm.

23 B. This document is not intended to be an exhaustive list of all sources considered. All sources considered,

including public comment letters and other information, are contained in the record maintained by the

Jefferson County Department of Community Development.24 Bahls, P. 2004. Fish Distribution and Abundance in Shallow Intertidal Habitats of Tarboo and North Dabob

Bays. Prepared for Jefferson County Marine Resources Committee. February 2004.25 Bahls, P. 2006. Personal communication to ESA Adolfson, comments on preliminary draft I&C report.

October 2006.26 Bahls, P., C. Kindberg, M. Wait, J. Glasgow. 2006. An Assessment of Error in State Shoreline Designation for

Lakes in Washington. Northwest Watershed Institute and Washington Trout. August, 2006.

27Bahls, Peter, Cary Kindberg, Micah Wait, and Jamie Glasgow. 2002. An Assessment of Error in State

Shoreline Designation for Lakes of Washington. http://www.washingtontrout.org/ludlow/index.shtml

28 Baker, J.M.R. and T.R. Halliday. 1999. Amphibian colonization of new ponds in an agricultural landscape.

Herpetological Journal 9:55-63.29 Bargmann, G. 1998. Forage Fish Management Plan. Washington Department of Fish and Wildlife.

30 Bash, Berman, and Bolton. 2001. Effects of sediment and suspended solids on salmonids. UW Center for

Streamside Studies. November, 2001.31 Beamer, Eric, Aundrea McBride, Rich Henderson, and Karen Wolf, May 2003. The Importance of Non-Natal

Pocket Estuaries in Skagit Bay to Wild Chinook Salmon: An Emerging Priority for Restoration. Skagit System

Cooperative Research Department. 32 Beamish, R. J., S. Jones, CE. Neville, F. Sweeting, G. Karreman, S. Saksida, and E. Gordon. 2006. Exceptional

marine survival of pink salmon that entered the marine environment in 2003 suggests that farmed Atlantic

salmon and Pacific salmon can coexist successfully in a marine ecosystem on the Pacific coast of Canada.

ICES Journal of Marine Science, Vol. 63. Pp. 1326 - 1337.33 Beardslee, K. June 2007. Wild Fish Conservancy comment letter to WA Dept. of Ecology re: Draft Renewal

NPDES Permits, American Gold Seafoods Marine Net Pens. 17pp.34 Belknap, William. 1994. Wall-base channels in western Washington: Location, detection, mapping and

winter use by juvenile salmonid fishes. M.S. Thesis, U.W. Center for Streamside Studies.

http://depts.washington.edu/cwws/Theses/belknap.html

35 Benbrook, C.M. February 2002. Antibiotic drug use in U.S. aquaculture. The Institute for Agriculture and

Trade Policy. 18 pp.36 Benda, L.E., P. Bigalow, and W. Worsley. 2002. Recruitment of instream large wood in old-growth and

second-growth redwood forests, northern California, U.S.A. Canadian Journal of Forestry Research 32:

1460–1477.37 Berbells, R.S. 2003. Shoreline Survey of the Discovery Bay Shellfish Growing Area. Prepared by Scott

Berbells, Public Health Advisor. March 2004.38 Beschta, R.L. 1978. Long-term patterns of sediment production following road construction and logging in

the Oregon Coast Range. Water Resources Research. 14:1101-1016.39 Bilby, R. E. 1984. Characteristics and frequency of cool-water areas in a western Washington stream. Journal

of Freshwater Ecology 2: 593-602.40 Bilby, R.E. and J.W. Ward. 1989. Changes in characteristics and function of woody debris with increasing size

of streams in western Washington. Transactions of the American Fisheries Society 188:368-378.

41 Bilby, R.E. and J.W. Ward. 1989. Changes in characteristics and function of woody debris with increasing size

of streams in western Washington. Transactions of the American Fisheries Society 188:368-378.

2 of 43

12-9-2013



42 Bishop D.M. and M.E. Stevens. 1964. Landslides on logged areas in southeast Alaska. U.S. Dept. Agr. For.

Serv. Res. Pap. NOR-1.43 Blunt, D.J., D.J. Easterbrook, and N.W. Rutter. 1987. Chronology of Pleistocene sediments in the Puget

Lowland, Washington, Washington Division of Earth Resources Bulletin 77: 321-353.44 Bolton et al. 2001. Ecological Issues in Floodplains and Riparian Corridors. Submitted to Washington

Department of Fish and Wildlife, Washington Department of Ecology, Washington Department of

Transportation. July 2001.45 Booth, D.B. 1994. Glaciofluvial infilling and scour of the Puget Lowland, Washington, during ice-sheet

glaciation. Geology 22: 695-698.46 Booth, D.B. 2000. Forest Cover, Impervious-Surface Area, and the Mitigation of Urbanization Impacts in King

County, Washington. Prepared for King County Water and Land Resources Division. Seattle, Washington. 18

pp.47 Booth, D.B. and C.R. Jackson. 1997. Urbanization of aquatic systems: degradation thresholds, stormwater

detection, and the limits of mitigation. Journal of the American Water Resources Association 33(5): 1077-

1090.48 Booth, D.B. and L.E. Reinelt. 1993. Consequences of urbanization on aquatic systems – Measured effects,

degradation thresholds, and corrective strategies. Proceedings from Watershed ’93 A National Conference

on Watershed Management, March 21-23, 1993. pp. 545-550.49 Boyce, J. A. December 1988. WA Department of Ecology: Use Conflicts and Floating Aquaculture in Puget

Sound. 43 pp.50 Brabec, E., S. Schulte, and P.L. Richards. 2002. Impervious Surfaces and Water Quality: A Review of Current

Literature and Its Implications for Watershed Planning. Journal of Planning Literature 16(4) 499-514.

51 Brennan, J.S. Riparian Functions and the Development of Management Actions in Marine Nearshore

Ecosystems. p. 11 in Lemieux, J.P., Brennan, J.S., Farrell, M., Levings, C.D., and Myers, D. Proceedings of the

DFO/PSAT sponsored Marine Riparian Experts Workshop , Tsawwassen, BC, February 17-18, 2004. 2004.

Can. Man. Rep. Fish. Aquat. Sci. No. 2680.52 Brennan, J.S., and H. Culverwell. 2004. Marine Riparian: An Assessment of Riparian Functions in Marine

Ecosystems. Published by Washington Sea Grant Program Copyright 2005, UW Board of Regents Seattle,

WA. 34 p. http://www.wsg.washington.edu/research/ecohealth/brennan.pdf

53 Brennan, J.S., and H. Culverwell. 2004. Marine Riparian: An Assessment of Riparian Functions in Marine

Ecosystems. Published by Washington Sea Grant Program Copyright 2005, UW Board of Regents, Seattle,

WA. 27p.54 Brewer, S., J. Watson, D. Christensen, and R. Brocksmith. 2005. Hood Canal and Eastern Strait of Juan de

Fuca Summer Chum Salmon Recovery Plan. Hood Canal Coordinating Council, version November 15, 2005.

55 Bricknell, I. R., S. J. Dalesman, B. O'Shea, C. C. Pert and A. J. Luntz. August 2006. Effect of environmental

salinity on sea lice Lepeophtheirus salmonis settlement success. 1 P.

56 Bright, K. April 5, 2011. State, Local, and Federal Regulatory Controls for Finfish Net Pen Aquaculture in

Washington. 3 pp.57 Brooks, K. M. 2005. Reviews in Fisheries Science. The Effects of Water Temperature, Salinity, and Currents

on the Survival and Distribution of the Infective Copepodid Stage of Sea Lice (Lepeophtheirus Salmonis)

Originating on Atlantic Salmon Farms in the Broughton Archipelago of British Columbia, Canada. 13: Pp.

177-204

58 Brooks, K. M. 1991. The Genetics and Epizootiology of Hemic Neoplasia in Mytilus edulis. 1991. Ph.D.

dissertation, University of Washington, Seattle, WA. 282 pp.59 Brooks, K. M. 1992. Infaunal community structure changes associated with organic loading at an intensive

salmon husbandry site. Report to the Washington State Department of Natural Resources, Olympia,

Washington. 19 pp.

3 of 43

12-9-2013



60 Brooks, K. M. 1992. Review of bacterial and toxicant contamination in Dyes Inlet, WA and request for

shellfish harvest certification of Chico Bay, Phiney Bay and the east side of Erland Point, all in Dyes Inlet,

Kitsap County, Washington. 21 pp.61 Brooks, K. M. and C. V. W. Mahnken. 2003. Interactions of Atlantic salmon in the Pacific northwest

environment. II. Organic wastes. Fisheries Research 62 (2003) Pp. 255-293

62 Brooks, K. M. and Elston R. A. 1991. Epizootiology of hemic neoplasia in Mytilus trossulus in Washington

State, Part II. J. Shellfish Res. , 10:22363 Brooks, K. M. and S. R. M. Jones. Perspectives on pink Salmon and sea lice: scientific evidence fails to

support the extinction hypothesis. 15 pp.

64 Brooks, K.M. (In-Review). The frequency of Mytilus edulis galloprovincialis alleles in Washington State

marine waters where the species is commercially cultivated. 14 pp.65 Brooks, K.M. , A.R. Stierns and C. Backman. 2004. Seven year remediation study at the Carrie Bay Atlantic

salmon (Salmo salar ) farm in the Broughton Archipelago, British Columbia, Canada. Aquaculture.

Aquaculture 239, pp. 81-123.66 Brooks, K.M. 1991. Shellfish Inventory and Management Considerations associated with the intensive

cultivation of Crassostrea gigas in California and Washington by Coast Oyster Company. Report prepared

for First Interstate Bank, Seattle, Washington.67

to control burrowing shrimp in Willapa Bay, Washington - July to September, 1992. Report to the US EPA,

Contract BSCC 692. 31 pp. plus appendices.68 Brooks, K.M. 1993. Impacts on Benthic Invertebrate Communities Associated with the Aerial Application of

Carbaryl to Control Burrowing Shrimp on Cultivated Oyster Beds in Willapa Bay for the U.S. Environmental

Protection Agency. 63 pp.69 Brooks, K.M. 1993. Integrated Pest Management Program Development. Differential pesticide impacts on

closely related invertebrate species in eelgrass meadows of Pacific Northwest estuaries. Pacific Estuarine

Research Society Annual Meeting, Long Beach, WA, May 14, 1993. 47 pp.

70 Brooks, K.M. 1993. Literature Review and Assessment of the Environmental Risks Associated with the Use of

Treated Wood Products in Aquatic Environments. Report prepared for, and published by, the Western

Wood Preservers Association, 601 Main Street, Suite 401, Vancouver, WA 98550.71 Brooks, K.M. 1993. Recovery of benthic communities associated with interrupted production at a

commercial salmon net-pen in Port Townsend, WA. Report to the Washington State Department of Natural

Resources. (Included in the annual monitoring report for the Paradise Bay net pen site.)

72 Brooks, K.M. 1994. Histopathological Examination of Archived Bivalves Mytilus edulis trossulus and

Protothaca staminea in Support of the Prince William Sound Long Term Monitoring Program. Report to

NOAA/ORCA/HMRAD/ORCA32. 7600 Sand Point Way NE, Seattle, WA 98115. 40 pp.73 Brooks, K.M. 1994. Histopathological Examination of Archived Bivalves Mytilus edulis trossulus and

Protothaca staminea in Support of the Prince William Sound Long Term Monitoring Program. Report to

NOAA/ORCA/HMRAD/ORCA32. 7600 Sand Point Way NE, Seattle,WA 98115. 40 pp.74 Brooks, K.M. 1995. Aquatic Environmental Risk Assessments and a Spreadsheet Model Predicting Creosote

Treated Wood Contributions of Polycyclic Aromatic Hydrocarbons to the Water Column and Sediments.

ASTM Conference Proceedings. Fifth Symposium on Environmental Toxicology and Risk Assessments:

Biomarkers and Risk Assessment. Sponsored by: ASTM Committee E-47 on Biological Effects and

Environmental Fate. April 3 - 5, 1995. Denver, Colorado.75 Brooks, K.M. 1995. Assessment of the Environmental Risks Associated with the Use of Treated Wood in Lotic

Systems. Published by the Western Wood Preservers Institute, 601 Main Street, Suite 401, WA 98660. 17

pp.

4 of 43

12-9-2013



76 Brooks, K.M. 1995. Literature Review, Computer Model and Assessment of the Potential Environmental

Risks Associated With Creosote Treated Wood Products Used in Aquatic Environments. Published by the

Western Wood Preservers Institute, 601 Main Street, Suite 401, Vancouver, WA 98660. 137 pp.

77 Brooks, K.M. 1995. Long Term Response of Benthic Invertebrate Communities Associated with the

Cultivated Pacific Oyster (Crassostrea gigas ) Beds in Willapa Bay, Washington to Fulfill Requirements of the

EPA Carbaryl Data Call In. Report to the U.S. EPA under Contract BSCC 692. 69 pp.

78 Brooks, K.M. 1996. Assessment and Management of Wastes Associated with the Intensive Culture of

Salmon in British Columbia, Canada. Prepared for the B.C. Salmon Farmers Association, Vancouver, B.C. 47

pp.79 Brooks, K.M. 1996. Baseline Shellfish Surveys of Tidelands Near the Tatitlek, Nanwalek and Port Graham

Villages in Support of the Nanwalek/Port Graham/Tatitlek Clam Restoration Project; Exxon Valdez Oil Spill

Trustee Council Project Number 95131. 52 p. plus appendices.80 Brooks, K.M. 1996. City of Ocean Shores Wetland Inventory. Produced for the City of Ocean Shores under

Department of Ecology Grant G9600033. 28 pp. plus appendices. 81 Brooks, K.M. 1996. City of Ocean Shores Wetland Inventory. Produced for the City of Ocean Shores under

Department of Ecology Grant G9600033. 28 pp. plus appendices. Brooks. K.M. 1997. Literature Review and

Assessment of the Environmental Risks Associated with the Use of ACZA Treated Wood Products in Aquatic

Environments. Second Edition. Prepared for the Western Wood Preservers' Institute 7017 NE Highway 99,

Suite 108, Vancouver, WA 98665. 98 pp.82 Brooks, K.M. 1996. Evaluating the environmental risks associated with the use of chromated copper

arsenate-treated wood products in aquatic environments. Estuaries Vol. 19, No. 2A, p. 296-305.

83 Brooks, K.M. 1996. September, 1996, Baseline electrophoretic survey of mussels, Mytilus edulis trossulus

and Mytilus edulis galloprovincialis in Holmes Harbor, Washington. Produced for Taylor United, Inc.

Southeast 130 Lynch Road, Shelton, Washington 98584 in fulfillment of conditions of Island County

Shoreline Substantial Development Permit SPD 013/94 and Army Corps of Engineers Permit COE (94-1-

00327). 13 pp.84 Brooks, K.M. 1997. Final Report – PAH Sediment Sampling Study in River South Parcel – July 17, 1996 to

August 26, 1997. Prepared for Commonwealth Edison Company, Environmental Services Department, One

First National Plaza, 10 South Dearborn, Chicago, Illinois 60690. 21 pp. plus appendices.

85 Brooks, K.M. 1997. Literature Review and Assessment of the Environmental Risks Associated With the Use

of CCA Treated Wood Products in Aquatic Environments. 3rd Edition. Prepared for the Western Wood

Preservers Institute, 7017 NE Highway 99 Ste. 108, Vancouver, WA 98665. 100 pp.

86 Brooks, K.M. 1998. 1998 Annual Report of the Evaluation of Polycyclic Aromatic Hydrocarbon Migration

From Railway Ties Into Ballast and Adjacent Wetlands – a Mesocosm Study. Prepared for Dr. Richard

Monzingo, Commonwealth Edison, P.O. Box 767, Chicago, IL 60690-0767 for submission to the U.S. Fish and

Wildlife Service. 34 pages plus appendices.87 Brooks, K.M. 1998. Literature Review and Assessment of the Environmental Risks Associated With the Use

of ACQ Treated Wood Products in Aquatic Environments. Prepared for: Western Wood Preservers Institute,

7017 NE Highway 99, Suite 108, Vancouver, WA 9866588 Brooks, K.M. 1998. Literature Review and Assessment of the Environmental Risks Associated With the Use

of ACQ Treated Wood Products in Aquatic Environments. Prepared for: Western Wood Preservers Institute,

7017 NE Highway 99, Suite 108, Vancouver, WA 98665.

5 of 43

12-9-2013



89 Brooks, K.M. 1998. Literature Review, Computer Model and Assessment of the Potential environmental risks

Associated with Pentachlorophenol Treated Wood Products Used in Aquatic Environments. Prepared for:

Western Wood Preservers Institute, 7017 NE Highway 99, Suite 108, Vancouver, WA 98665.

90 Brooks, K.M. 1999. Stolt Canada Arrow Pass Salmon Farm Benthic and Shellfish Effects Study 1996 – 997.

Produced for Stolt Sea Farm Incorporated, 1405 Spruce Street, Campbell River, British Columbia, Canada

V9W 7K1. 107 pp. plus appendices.91 Brooks, K.M. 1999. Stolt Canada Arrow Pass Salmon Farm Benthic and Shellfish Effects Study 1996 – 1997.

Produced for Stolt Sea Farm Incorporated, 1405 Spruce Street, Campbell River, British Columbia, Canada

V9W 7K1. 107 pp. plus appendices.92 Brooks, K.M. 2000. Assessment of the environmental effects associated with wooden bridges preserved

with creosote, pentachlorophenol or chromated-copper-arsenate (CCA-C). U.S. Department of Agriculture –

Res. Pap. FPL-RP-587. Madison, WI: U.S. Department of Agriculture, Forest Service, Forest Products

Laboratory, 100 pp.93 Brooks, K.M. 2000. Database report describing sediment physicochemical response to salmon farming in

British Columbia from 1996 through April 2000. Report prepared for the British Columbia Ministry of

Environment and the British Columbia Salmon Farmers Association, 408 West Pender Street, Vancouver,

British Columbia, Canada V6E 2S9. 41 pp.94 Brooks, K.M. 2000. Determination of copper loss rates from Flexgard XI™ treated nets in marine

environments and evaluation of the resulting environmental risks. Report prepared for the British Columbia

Ministry of Environment and the British Columbia Salmon Farmers Association. 24 pp.95 Brooks, K.M. 2000. Environmental effects associated with the use of CCA-C, ACZA and ACQB pressure

treated wood used to construct boardwalks in wetland areas. U.S. Department of Agriculture – Forest

Products Laboratory, Research Paper FPL-RP-582. 126 pp. plus appendices.96 Brooks, K.M. 2000. Final Report – Evaluation of Polycyclic Aromatic Hydrocarbon Migration From Railway

Ties Into Ballast and Adjacent Wetlands. Midwest Generation, Corporate EH&S Group, 440 S Lasalle Street,

Suite 3500, Chicago, IL 60605. 94 pp.97 Brooks, K.M. 2000. Literature review and model evaluation describing the environmental effects and

carrying capacity associated with the intensive culture of mussels (Mytilus edulis galloprovincialis ).

Technical appendix for an Environmental Impact Statement prepared for Taylor Resources, Southeast 130

Lynch Road, Shelton, WA 98584. 129 pp.98 Brooks, K.M. 2000. Recommended interim sediment quality guidelines for evaluating the environmental

response to marine netpen culture operations. Prepared for the British Columbia Salmon Farmers’

Association, Number 408 – 1200 West Pender Street, Vancouver, British Columbia, Canada V6E 2S9. 11 pp.

99 Brooks, K.M. 2000. Results of the Fall 2000 interim salmon farm monitoring at tenures operated by Stolt Sea

Farms and Pacific National Aquaculture in British Columbia. Prepared for the British Columbia Salmon

Farmers’ Association. Number 408 – 1200 West Pender Street, Vancouver, British Columbia, Canada V6E

2S9. 15 pp.100 Brooks, K.M. 2000. Results of the June 2000 interim salmon farm monitoring at Pacific National Group

netpens located in Clayoquot Sound, British Columbia. Report prepared for Pacific National Group, 737

Yates Street – Suite 310, Victoria, British Columbia, Canada V8W 1L6. 35 pp.101 Brooks, K.M. 2000. Results of the June 2000 interim salmon farm monitoring at Stolt Sea Farm, Inc. salmon

aquaculture tenures located in British Columbia. Report prepared for Stolt Sea arm, Inc. 1261 Redwood

Street, Campbell River, British Columbia, Canada V9W 3K7. 93 pp.102 Brooks, K.M. 2000. Results of the June 2000 interim salmon farm monitoring at Stolt Sea Farm, Inc. salmon

aquaculture tenures located in British Columbia. Report prepared for Stolt Sea Farm, Inc. 1261 Redwood

Street, Campbell River, British Columbia, Canada V9W 3K7. 93 pp.

6 of 43

12-9-2013



103 Brooks, K.M. 2000. Sediment concentrations of sulfides and total volatile solids near salmon farms in British

Columbia, Canada, during the period June through August, 2000 and recommendations for additional

sampling. Prepared for the British Columbia Ministry of Environment and the British Columbia Salmon

Farmers’ Association. 16 pp.104 Brooks, K.M. 2000. Sediment concentrations of zinc near salmon farms in British Columbia, Canada during

the period June through August 2000. Report prepared for the British Columbia Ministry of Environment

and the British Columbia Salmon Farmers Association. 12 pp.105 Brooks, K.M. 2001. An evaluation of the relationship between salmon farm biomass, organic inputs to

sediments, physicochemical changes associated with those inputs and the infaunal response – with

emphasis on total sediment sulfides, total volatile solids, and oxidationreduction potential as surrogate

endpoints for biological monitoring – Final Report. Technical report produced for the Technical Advisory

Group (TAG) to the British Columbia Ministry of Environment, 2080-A Labieux Road, Nanaimo, British

Columbia, Canada V9T 6J9. 186 pp. plus appendices.106 Brooks, K.M. 2001. An evaluation of the relationship between salmon farm biomass, organic inputs to

sediments, physicochemical changes associated with those inputs and the infaunal response – with

emphasis on total sediment sulfides, total volatile solids, and oxidationreduction potential as surrogate

endpoints for biological monitoring – Final Report. Technical report produced for the Technical Advisory

Group (TAG) to the British Columbia Ministry of Environment, 2080-A Labieux Road, Nanaimo, British

Columbia, Canada V9T 6J9. 186 pp. plus appendices.107 Brooks, K.M. 2001. Chapter 4. Salmon Farming and the Environment. In: Nash (2001) The Net-pen Salmon

Farming Industry in the Pacific Northwest. NOAA Technical Memorandum NMFS-NWFS-NWFSC-49. pp. 36 –

73.108 Brooks, K.M. 2001. Dungeness crab (Cancer magister ) and spot prawn (Pandalus platyceros ) holding and

feeding studies in support of Emamectin Benzoate acute toxicity testing. Technical report produced for Dr.

Rejean Berman, Schering-Plough Animal Health, 3535 Trans-Canada Highway, Pointe-Claire, Quebec,

Canada H9R 1B4. 50 pp.109 Brooks, K.M. 2001. Dungeness crab (Cancer magister ) and spot prawn (Pandalus platyceros ) holding and

feeding studies in support of Emamectin Benzoate acute toxicity testing. Technical report produced for Dr.

Rejean Berman, Schering-Plough Animal Health, 3535 Trans-Canada Highway, Pointe-Claire, Quebec,

Canada H9R 1B4. 50 pp.110 Brooks, K.M. 2001. Environmental assessment and monitoring program associated with aquaculture

production facilities operated by Hubbs SeaWorld Research Institute at the Grace oil drilling platform in the

Santa Barbara Channel, California. Technical report prepared for Hubbs SeaWorld Research Institute, 2595

Ingraham Street, San Diego, California 92109. 26 pp.111 Brooks, K.M. 2001. Final Report – Chugach Regional Resources Commission Bivalve Enhancement Program –

Bivalve inventories and native littleneck clam (Protothaca staminea ) culture studies – Exxon Valdez Oil Spill

Trustee Council Project Number 95131. 189 pp.112 Brooks, K.M. 2001. Native littleneck clam (Protothaca staminea ) culture and associated environmental

effects in Alaska. Technical paper presented at the November 13 – 14, 2001 Alaska Sea Grant Program

conference in Anchorage, Alaska. 23 pp.113 Brooks, K.M. 2001. New salmon net-pen site assessments and baseline surveys at Beddingfield and South

Millar Channel, Clayoquot Sound, British Columbia. Technical reported prepared for Pacific National

Aquaculture, 1001 Wharf Street – Suite 300, Victoria, British Columbia, Canada V8W 1T8. 21 pp.

114 Brooks, K.M. 2001. Recommendations to the British Columbia Farmed Salmon Waste Management

Technical Advisory Group for Biological and Physicochemical Performance Standards Applicable to Marine

Netpens. Technical report produced for the Technical Advisory Group of the British Columbia Ministry of

Environment, 2080-A Labieux Road, Nanaimo, British Columbia, Canada V9T 6J9. 24 pp.

7 of 43

12-9-2013



115 Brooks, K.M. 2001. Results of Summer 2001 interim salmon farm monitoring at Pacific National Aquaculture

netpens located in Clayoquot Sound, British Columbia. Technical reported prepared for Pacific National

Aquaculture, 1001 Wharf Street – Suite 300, Victoria, British Columbia, Canada V8W 1T8. 65 pp.

116 Brooks, K.M. 2001. Results of the July 2001 interim salmon farm monitoring at Stolt Sea Farm, Inc. salmon

aquaculture tenures located in British Columbia. Technical report prepared for Stolt Sea Farm, Inc. 1261

Redwood Street, Campbell River, British Columbia, Canada V9W 3K7. 64 pp.117 Brooks, K.M. 2002. Characterizing the environmental response to pressure treated wood. Proceedings. In:

Enhancing the Durability of Lumber and Engineered Wood Products”, Forest Products Society, 2801

Marshall Court, Madison, WI 53705-2299. pp. Annual Meeting, February 11 – 13, 2002, Kissimmee, Florida.

Pp. 59-71.118 Brooks, K.M. 2002. Characterizing the environmental response to pressure treated wood. Proceedings. In:

Enhancing the Durability of Lumber and Engineered Wood Products”, Forest Products Society, 2801

Marshall Court, Madison, WI 53705-2299. pp. Annual Meeting, February 11 – 13, 2002, Kissimmee, Florida.

Pp. 59-71.119 Brooks, K.M. 2002. Copper loss from copper naphthenate treated piling immersed in fresh water. Technical

report prepared for Mr. James A. Brient, Naphthenic Acid Technology Manager, Merichem Company

Research Center, 1503 Central, Houston, Texas 77012-2797. 9 pp. plus appendices.

120 Brooks, K.M. 2002. Copper loss from copper naphthenate treated piling immersed in fresh water. Technical

report prepared for Mr. James A. Brient, Naphthenic Acid Technology Manager, Merichem Company

Research Center, 1503 Central, Houston, Texas 77012-2797. 9 pp. plus appendices.

121 Brooks, K.M. 2002. Literature review, computer model and assessment of the potential environmental risks

associated with copper naphthenate treated wood products used in aquatic environments. Technical report

prepared for Mr. Gerald E. Davis, Merichem Chemicals and Refinery Services LLC, 2701 Warrior Road, P.O.

Box 40777, Tuscaloosa, Alabama 24404. 22 pp.122 Brooks, K.M. 2002. Results of the July 2001 interim salmon farm monitoring at Stolt Sea Farm, Inc. salmon

aquaculture tenures located in British Columbia. Technical report prepared for Stolt Sea Farm, Inc. 1261

Redwood Street, Campbell River, British Columbia, Canada V9W 3K7. 81 pp.123 Brooks, K.M. 2003. An assessment of whether pink salmon (Oncorhynchus gorbuschai) runs in the

Broughton Archipelago of British Columbia, Canada are threatened by sea lice (Lepeophtheirus salmonis )

infections originating on cultured Atlantic salmon (Salmo salar ). Legal affidavit prepared for Mr.

Christopher Harvey, Q.C., MacKenzie Fujisawa Barristers & Solicitors, 1600-1095 West Pender Street,

Vancouver, British Columbia Canada V6E 2M6 57 pp.124 Brooks, K.M. 2003. Application of the Infaunal Trophic Index to the evaluation of macrobenthic effects

associated with salmon farming in British Columbia. Technical report prepared for the British Columbia

Ministry of Agriculture, Food and Fisheries. 30 pp.125 Brooks, K.M. 2003. Chemical and Biological Remediation at the Upper Retreat Atlantic Salmon Farm in

Retreat Passage, Broughton Archipelago, British Columbia – Tenure 1404379. Technical report prepared for

Stolt Sea Farms, 1761 Redwood Street, Campbell River, British Columbia, Canada V9W 3K7. 34 pp.

126 Brooks, K.M. 2003. Chemical and Biological Remediation at the Upper Retreat Atlantic Salmon Farm in

Retreat Passage, Broughton Archipelago, British Columbia – Tenure 1404379. Technical report prepared for

Stolt Sea Farms, 1761 Redwood Street, Campbell River, British Columbia, Canada V9W 3K7. 34 pp.

127 Brooks, K.M. 2003. Chemical and biological remediation of the benthos near Atlantic salmon farms.

Aquaculture, Volume 219, Issues 1-4, pp. 355-377.

8 of 43

12-9-2013



128 Brooks, K.M. 2003. Comments regarding the Environmental Protection Agencies Draft preliminary Risk

Assessment on Creosote. Technical response provided to U.S. Creosote Council II, care-of Mr. David Webb,

357 Browns Hill Road, Valencia, PA 16059. 47 pp.129 Brooks, K.M. 2003. Comments regarding the Environmental Protection Agency’s Draft Preliminary Risk

Assessment for Arsenical Wood Preservatives. Technical response provided to the Arsenical Wood

Preservatives Task Force, American Chemistry Council, care-of Mr. Has Shah, 1300 Wilson Blvd., Arlington,

VA 22209. 41 pp.130 Brooks, K.M. 2003. Environmental response to the use of ACQ-C, CCA-C Tebuconazole, and Untreated

southern yellow pine floats and posts in Montgomery’s Pond. Technical report produced for Chemical

Specialties Inc. One Woodlawn Green, Suite 250, Charlotte, North Carolina 28217. 31 pp. plus appendices.

141 pp. plus appendices.131 Brooks, K.M. 2003. Environmental Risk Assessment for CCA-C and ACZA Treated Wood. Technical report

prepared for the Western Wood Preservers Institute, 7017 NE Highway 99 Ste. 108, Vancouver, WA 98665.

40 pp.132 Brooks, K.M. 2003. Environmental Risk Assessment for CCA-C and ACZA Treated Wood. Technical report

prepared for the Western Wood Preservers Institute, 7017 NE Highway 99 Ste. 108, Vancouver, WA 98665.

40 pp.133 Brooks, K.M. 2003. Measurement of nutrients in bottom water under and adjacent to the Deepwater Point

mussel farm in Totten Inlet, Washington. Prepared for the Pacific Shellfish Institute, 120 State Avenue NE

#142, Olympia, Washington as part of Department of Commerce Award No. NA16RG1591. 9 pp.

134 Brooks, K.M. 2003. Metal loss rates as a function of rainfall from southern yellow pine treated with ACQ-C

preservative amended with and without water repellents. Technical report produced for Chemical


22 pp. plus appendices.135 Brooks, K.M. 2003. Metal loss rates from southern yellow pine treated with ACQ-C preservative amended

with and without water repellents and from CCA-C treated wood. Technical report produced for Chemical


136 Brooks, K.M. 2004. Baseline inventory of macrobenthos at Stolt Sea Farms’ Humphrey Rocks Tenure in

Tribune Channel, Broughton Archipelago, British Columbia. Technical report prepared for Stolt Sea Farms,

1761 Redwood Street, Campbell River, British Columbia, Canada V9W 3K7. 18 pp.

137 Brooks, K.M. 2004. Creosote treated piling – perceptions versus reality. Public outreach document prepared

for U.S. Creosote Council II, care-of Mr. David Webb, 357 Browns Hill Road, Valencia, PA 16059. 15 pp.

138 Brooks, K.M. 2004. Environmental feasibility study for aquaculture in Port Angeles Harbor and the Straits of

Juan de Fuca. Technical report prepared for Olympic Aqua Ventures, L.L.C., 111 Hurricane View Lane Port

Angeles, WA 98362 42 pp.139 Brooks, K.M. 2004. Environmental response to ACZA treated wood structures in Pacific Northwest marine

environments. Technical report prepared for J.H. Baxter and Company, 1700 South El Camino Real, San

Mateo, CA 94402. 30 pp.140 Brooks, K.M. 2004. Environmental response to creosote treated wood structures in Puget Sound,

Washington. Technical report prepared for U.S. Creosote Council II, care-of Mr. David Webb, 357 Browns Hill

Road, Valencia, PA 16059. 52 pp.141 Brooks, K.M. 2004. Evaluation of the macrobenthic community at the edge of tenure on the 300 oT transect

at Stolt Sea Farms’ Swanson Island Tenure (Number 1304381) in the Broughton Archipelago, British

Columbia. Technical report prepared for Stolt Sea Farms, 1761 Redwood Street, Campbell River, British

Columbia, Canada V9W 3K7. 12 pp.

9 of 43

12-9-2013



142 Brooks, K.M. 2004. Metal loss rates in a dynamic leaching system from Strong-Seal fibreglass wrapped CCA-C

treated wood. Technical report prepared for Wood Preservers Incorporated, P.O. Box 158, Warsaw, Virginia

22572. 8 pp.143 Brooks, K.M. 2004. Modelling, managing and assessing the environmental risks associated with the use of

creosote treated wood products. Technical report prepared for Creosote Council Europe, care of Per Bech

A/S, Koppers Denmark, Avernakke, 5800, Nyborg, Denmark. 84 pp.144 Brooks, K.M. 2004. Polycyclic Aromatic Hydrocarbon Migration From Creosote-Treated Railway Ties Into

Ballast and Adjacent Wetlands. Res. Pap. FPL-RP-617. Madison, WI: U.S. Department of Agriculture, Forest

Service, Forest Products Laboratory. 53 pp.145 Brooks, K.M. 2004. Polycyclic Aromatic Hydrocarbon Migration From Creosote-Treated Railway Ties Into

Ballast and Adjacent Wetlands. Res. Pap. FPL-RP-617. Madison, WI: U.S. Department of Agriculture, Forest

Service, Forest Products Laboratory. 53 pp.146 Brooks, K.M. 2004. September 2004 sediment physicochemical monitoring at Hubbs-SeaWorld Research

Institute’s enhancement netpens located at Santa Catalina Island, Aqua Hedionda Laboon and San Diego

Bay. Technical report prepared for Hubbs-SeaWorld Research Institute 2595 Ingraham Street, San Diego, CA

92109. 29 pp.147 Brooks, K.M. 2005 (In-review) Computer model and risk assessment predicting the aquatic environmental

response to bridges constructed using creosote preserved wood. Technical report prepared for the U.S.

Department of Agriculture, Forest Service, Forest Products Laboratory, Madison, WI 53705. Timber Bridge

Joint Venture Agreement 01-JV-11111136-104. 86 pp.148 Brooks, K.M. 2005. Baseline information describing sediment physicochemistry of Totten Inlet and the

macrobenthos of the proposed North Totten Inlet mussel farm. Technical report prepared for Taylor

Resources, Southeast 130 Lynch Road, Shelton, WA 98584. 53 pp.149 Brooks, K.M. 2005. Baseline information describing sediment physicochemistry of Totten Inlet and the

macrobenthos of the proposed North Totten Inlet mussel farm. Technical report prepared for Taylor

Resources, Southeast 130 Lynch Road, Shelton, WA 98584. 53 pp. 150 Brooks, K.M. 2005. Benthic response at the Deepwater Point mussel farm in Totten Inlet, Puget Sound,.

Washington State USA. Technical report prepared for Taylor Resources, Southeast 130 Lynch Road, Shelton,

WA 98584. 45 pp.151 Brooks, K.M. 2005. Biological evaluation and essential fish habitat assessment – road crossing over the

Middle Branch of Cassalery Creek and adjacent wetlands. U.S. Army Corps of Engineers Reference

D200401495-3755. Prepared for Four Seasons Engineering, Port Angeles, Washington 98362. 19 pp.

152 Brooks, K.M. 2005. Biological evaluation and essential fish habitat assessment – road crossing over the

Middle Branch of Cassalery Creek and adjacent wetlands. U.S. Army Corps of Engineers Reference

D200401495-3755. Prepared for Four Seasons Engineering, Port Angeles, Washington 98362. 19 pp.

153 Brooks, K.M. 2005. Copper and tebuconazole loss rates from southern yellow pine treated to a retention of

0.246 pounds per cubic foot with CA-B preservative. Technical report produced for Arch Wood Protection,

1955 Lake Park Drive, Smyrna, Georgia 30080. 38 pp. plus appendices.154 Brooks, K.M. 2005. Copper, zinc and arsenic loss rates from Douglas fir piling treated to a nominal retentions

1.0 and 1.5 pounds per cubic foot with Ammoniacal Copper Zinc Arsenate (ACZA) preservative and receiving

four different post treatment Best Management Practices designed to minimize metal losses to fresh- and

saltwater environments. Technical report prepared for J.H. Baxter and Company, 1700 South El Camino

Real, San Mateo, CA 94402. 41 pp.155 Brooks, K.M. 2005. Copper, zinc and arsenic loss rates from Douglas fir piling treated to a nominal retentions

1.0 and 1.5 pounds per cubic foot with Ammoniacal Copper Zinc Arsenate (ACZA) preservative and receiving

four different post treatment Best Management Practices designed to minimize metal losses to fresh- and

saltwater environments. Technical report prepared for J.H. Baxter and Company, 1700 South El Camino

Real, San Mateo, CA 94402. 41 pp.

10 of 43

12-9-2013



156 Brooks, K.M. 2005. Metal loss rates to rainfall falling on 2”x6” lumber treated with Ammoniacal Copper Zinc

Arsenate (ACZA) preservative. Technical report produced for J.H. Baxter and Company, 1700 South El

Camino Real, San Mateo, CA 94402. 12pp.157 Brooks, K.M. 2005. The affects of water temperature, salinity and currents on the survival and distribution

of the infective copepodid stage of sea lice (Lepeophtheirus salmonis ) originating on Atlantic salmon farms

in the Broughton Archipelago of British Columbia, Canada. Reviews in Fisheries Science. 13:177-204.

158 Brooks, K.M. 2005. The epibenthic community observed in association with the intensive raft culture of

Mytilus edulis galloprovincialis in Totten Inlet, Washington. Funded by the U.S. Department of Commerce

Award No. NA16RG1591. Submitted to Pacific Shellfish Institute, 120 State Avenue NE #142, Olympia, WA

98501.159 Brooks, K.M. 2006. Assessing the environmental costs associated with the netpen culture of Atlantic salmon

in the Northeast Pacific. 59 pp. Food and Agriculture Organization of the United Nations (FAO) and World

Fisheries Trust (WFT) Workshop on Comparative Environmental Costs of Aquaculture and Other Food

Production Sections – 24-28 April 2006, Vancouver, British Columbia, Canada. In-press by FAO.

160 Brooks, K.M. 2006. DRAFT Supplemental Best Available Science. Produced for the Jefferson County Critical

Area Ordinance Review Committee. Aquatic Environmental Sciences, 644 Old Eaglemount Road, Port

Townsend, Washington 98368. 67 pp.161 Brooks, K.M. 2006. Sediment physicochemical monitoring at delayed release netpens and raceways for

white seabass located in southern California during 2004 and 2005. Report prepared for Hubbs-Sea World

Research Institute, California Department of Fish and Game and Advisors to the Ocean Resources

Enhancement and Hatchery Program (OREHP). Aquatic Environmental Sciences, 644 Old Eaglemount Road,

Port Townsend, WA 98368. 97 pp.162 Brooks, K.M. 2006. Sediment physicochemical monitoring at delayed release netpens and raceways for

white seabass located in southern California during 2004 and 2005. Report prepared for Hubbs-Sea World

Research Institute, California Department of Fish and Game and Advisors to the Ocean Resources

Enhancement and Hatchery Program (OREHP). Aquatic Environmental Sciences, 644 Old Eaglemount Road,

Port Townsend, WA 98368. 97 pp.163 Brooks, K.M. 2006. Supplemental study of dissolved nutrients and particulate organic matter in waters near

the proposed mussel farm in North Totten Inlet, Washington State, USA. Technical report prepared for

Taylor Resources, Southeast 130 Lynch Road, Shelton, WA 98584. 48 pp.164 Brooks, K.M. 2006. Supplemental study of dissolved nutrients and particulate organic matter in waters near

the proposed mussel farm in North Totten Inlet, Washington State, USA. Technical report prepared for

Taylor Resources, Southeast 130 Lynch Road, Shelton, WA 98584. 48 pp.165 Brooks, K.M. 2007. An analysis of sediment sulfide and macrobenthic data for purposes of assessing the

concept of ecological threshold in monitoring the benthic effects of fish farms. British Columbia Ministry of

Environment Contract CNAEN07029. Technical report produced for the British Columbia Ministry of

Environment 2080-A Labieux Road, Nanaimo, British Columbia V9T 6J9. 63 pp., plus appendices

166 Brooks, K.M. 2007. An analysis of sediment sulfide and macrobenthic data for purposes of assessing the

concept of ecological threshold in monitoring the benthic effects of fish farms. British Columbia Ministry of

Environment Contract CNAEN07029. Technical report produced for the British Columbia Ministry of

Environment 2080-A Labieux Road, Nanaimo, British Columbia V9T 6J9. 63 pp., plus appendices

167 Brooks, K.M. 2007. Sediment physicochemical monitoring at delayed release netpens and raceways for

white seabass located in Southern California during the period 2004 through 2006. Technical report

produced for Hubbs-Sea World Research Institute, California Department of Fish and Game, and Advisors to

the Ocean Resources Enhancement and Hatchery Program (OREHP). 118 pp.

11 of 43

12-9-2013



168 Brooks, K.M. 2007. Supplemental best available science supporting recommendations for wetland buffer

widths in Jefferson County, Washington. Aquatic Environmental Sciences, 644 Old Eaglemount Road, Port

Townsend, Washington.169 Brooks, K.M. 2007a. Jefferson County Critical Area Ordinance Review Committee – Response to the

Department of Ecology critique of Brooks (2006) dated March 9, 2007. Aquatic Environmental Sciences, 644

Old Eaglemount Road, Port Townsend, Washington 98368. 71 pp.170 Brooks, K.M. 2007b. Background information and development of recommendations for wetland buffers by

the Jefferson County Critical Area Ordinance Review Committee. Aquatic Environmental Sciences, 644 Old

Eaglemount Road, Port Townsend, Washington 98368. 67 pp.171 Brooks, K.M. and C.V.W. Mahnken. 2003. Interactions of Atlantic Salmon in the Pacific Northwest

Environment. II. Organic Wastes. Fisheries Research, Vol. 62, Issue 3, pp. 255 – 293.172 Brooks, K.M. and C.V.W. Mahnken. 2003. Interactions of Atlantic salmon in the Pacific Northwest

Environment. III. Accumulation of zinc and copper. Fisheries Research, Vol. 62, Issue 3, pp. 295-305.

173 Brooks, K.M. and D.J. Stucchi. 2006. The Effects of Water Temperature, Salinity and Currents on the Survival

and Distribution of the Infective Copepodid Stage of the Salmon Louse (Lepeophtheirus salmonis )

Originating on Atlantic Salmon Farms in the Broughton Archipelago of British Columbia, Canada (Brooks,

2005) – A Response to the Rebuttal of Krkosek et al. (2005a). Reviews in Fisheries Science. 14:13-23.

174 Brooks, K.M., C. Mahnken and C. Nash. 2002. Environmental Effects Associated with Marine Netpen Waste

with Emphasis on Salmon Farming in the Pacific Northwest. In: Responsible Marine Aquaculture, Eds:

Stickney and McVey. CABI Publishing, Wallingford, United Kingdom pp. 159 – 204.

175 Brooks, K.M., D. Goyette and S. Christie. 2006. Sooke Basin Creosote Evaluation – Results of the October

2005 Reconnaissance Survey. Creosote Evaluation Committee, Fisheries and Oceans Canada, Pacific Yukon

Region, 201-401 Burrard Street, Vancouver, British Columbia, Canada V6C 3S5. 150 pp.

176 Brooks, K.M., D.E. Konasewich, H.C. Bailey, E.B. Szenasy and G.E. Brudermann. 1996. Antisapstain chemical

Technical Review. Prepared for the British Columbia Ministry of Environment; Subcommittee on

Antisapstain chemical Waste Control Regulation Amendments of the B.C. Stakeholder Forum on Sapstain

Control. 133 pp.177 Brooks. K.M. 1997. Literature Review and Assessment of the Environmental Risks Associated with the Use of

ACZA Treated Wood Products in Aquatic Environments. Second Edition. Prepared for the Western Wood

Preservers' Institute 7017 NE Highway 99, Suite 108, Vancouver, WA 98665. 98 pp.

178 Brosofske, K.D, J. Chen, R. J. Naiman, and J. F. Franklin. Harvesting effects on microclimatic gradients from

small streams to uplands in western Washington. Ecological Applications, 7(4), 1997, pp. 1188–1200.

179 Brosofske, K.D., J. Chen, R.J. Naiman, and J.F. Franklin. 1997. Harvesting effects on microclimatic gradients

from small streams to uplands in western Washington. Ecological Applications 7:188-1200.

180 Browdy, C. L. and J. A. Hargreaves (editors). 2009. Overcoming Technical Barriers to the Sustainable

Development of Competitive Marine Aquaculture in the United States. Summary of a Workshop on

Enhancing Competitiveness of Sustainable Marine Aquaculture in the United States: Addressing

Measurement Barriers to Technological Innovation. 120 pp.

181 Brumme, C.J., Abbe, T.B., Sampson, J.R. & Montgomery, D.R. 2006. Influence of vertical channel change

associated with accumulations on delineated channel migration zones, Washington, USA. Geomorphology

80, 2006. 295-309.

12 of 43

12-9-2013



182 Brummer, C. J. et al. 2006. Influence of vertical channel change associated with wood accumulations on

delineating channel migration zones, Washington, USA. Geomorphology, 80 (2006) 295–309. November,

2006. www.elsevier.com/locate/geomorph

183 Brummer, C.J. 2007. Effects of Riparian Forest Recovery on the Delineation of Channel Migration Zones.

Geologic Society Annual Meeting, Seattle May 4-6, 2007.184 Buckhouse and Gifford. 1976. Water Quality Implications of Cattle Grazing on a Semiarid Watershed in

Southeastern Utah. J. Range Management 29(2):109-113. 185 Bulthuis, D.A. 1994. Light environments/implications for management. Pages 23-27 in Wyllie-Echeverria, S.,

A.M. Olson, and M.J. Hershman (eds.). Seagrass Science and Policy in the Pacific Northwest: Proceedings of

a Seminar Series School of Marine Affairs. University of Washington, Seattle, WA.

186 Buschmann, A. H., V. A. Riquelme, M. C. Hernandez-Gonzalez, D. Varela, J. E. Jimenez, L. A. Henriquez, P. A.

Vergara, R. Guinez, L. Filun. 2006. A review of the impacts of salmonid farming on marine coastal

ecosystems in the southeast Pacific. ICES Journal of Marine Science. Vol. 63. Pp. 1338 - 1345.

187Bussell, M. 2011. EPA Ltr to Susewind and Pendowski, Ecology. Revised Sediment Management Standards

(WAC 173-204) including the Marine Finfish Rearing Facility Provision, as submitted on June 3, 1996. 32 pp.

188 Caicco, S.L. 1989. Natural Features Report: Dabob Bay Natural Area Reserve. Prepared for Division of Land

and Water Conservation, Department of Natural Resources, Olympia, Washington

189 Cairns, J. Jr. 1988. Increasing Diversity by Restoring Damaged Ecosystems. In: National Research Council.

1992. Restoration of Aquatic Ecosystems: Science, Technology and Public Policy. Washington, DC: National

Academy Press.190 Cascadia Consulting Group. 2003. Watershed Management Plan for the Quilcene-Snow Water Resource

Inventory Area (WRIA 17). Report to the Jefferson County Natural Resources Division. October 28, 2003.

191 Cascadia Consulting Group. 2006. Summary of Watershed Management Plan for the Skokomish-Dosewallips

Water Resource Inventory Area (WRIA 16). Report to the Mason County Department of Community

Development.192 Casola, J., J. Kay, A. Snover, R. Norheim, and L. Whitely Binder. 2005. Climate Impacts on Washington’s

Hydropower, Water Supply, Forests, Fish, and Agriculture. Prepared for King County Conference on Climate

Change, by University of Washington Climate Impacts Group. October 27, 2005. Available at:

http://www.cses.washington.edu/cig/outreach/workshops/kc2005.shtml193 Casola, J., J. Kay, A. Snover, R. Norheim, and L. Whitely Binder. 2005a. Climate Impacts on Washington’s

Hydropower, Water Supply, Forests, Fish, and Agriculture. Prepared for King County Conference on Climate

Change, by University of Washington Climate Impacts Group. October 27, 2005. Available at:

http://www.cses.washington.edu/cig/outreach/workshops/kc2005.shtml194 Casola, J., J. Kay, and A. Snover. 2005b. Climate Change Impacts Sector Fact Sheets. Prepared for King

County Conference on Climate Change, by University of Washington Climate Impacts Group. October 27,

2005. Available at: http://www.cses.washington.edu/cig/outreach/workshops/kc2005.shtml

195 Castelle, A.J., A.W. Johnson and C. Conolly. 1994. Wetland and Stream Buffer Size Requirements – A review.

J. Environ. Qual. 234:878-882.196 Castelle, A.J., A.W. Johnson, and C. Conolly. 1994. Wetland and stream buffer size requirements—a review.

Journal of Environmental Quality 23:878-882.197 Cederholm, C. J., et.al. 2000. Pacific Salmon and Wildlife – Ecological contexts, relationships, and

implications for management. Special Edition Technical Report, Prepared for D.H. Johnson and T.A. O’Neil

(Managing Directors), Wildlife-Habitat Relationships in Oregon and Washington. Washington Department

of Fish and Wildlife, Olympia.

13 of 43

12-9-2013



198 Cederholm, C.J., D.B. Houston, D.L. Cole, W.J. Scarlett. 1989. Fate of Coho Salmon (Oncorhynchus kisutch)

Carcasses in Spawning Streams. Canadian Journal of Fisheries and Aquatic Sciences. 46:1347-1355.

199 Cederholm, C.J., L.M. Reid, and E.O. Salo. 1980. Cumulative Effects of Logging Road Sediment on Salmonid

Populations in the Clearwater River, Jefferson County, Washington. Contribution No. 543, College of

Fisheries, University of Washington, Seattle, Washington.200 Central Puget Sound Growth Management Hearings Board. 2007. Digest of Decisions 1992-2007. (February

2007)201 Chemical Treatments: SLICE / Farmed and Dangerous. 4 pp.

202 Chen, J. et al. 1999. Microclimate in Forest Ecosystem and Landscape Ecology: Variations in local climate

can be used to monitor and compare the effects of different management regimes. BioScience Vol. 49 No. 4,

pp 288 – 297.203 Christensen, D. 2004. Environmental Analysis of Brinnon Subarea and Associated Comprehensive Plan and

UDC Amendments, Jefferson County Natural Resources Division. Available at:

http://www.co.jefferson.wa.us/commdevelopment/Brinnon%20Plan/Addendum%20to%20FEIS%201-26-

2004%20FINAL%20.pdf

204 Christiansen, D. 2004. Review of Best Available Science for 2004 Comprehensive Plan and Development

Regulations Update. September 22, 2004.205 Christiansen, D. 2005. Draft Hood Canal/Eastern Strait of Juan de Fuca Summer Chum Salmon Recovery

Plan . November 15, 2005. Draft report to Jefferson County Natural Resources Department.

206 Chu, Y.H., 1985. Beach erosion and protection: a case study at Lincoln Park, Seattle: Shore and Beach 53: 26-

32.207 Clallam County. 2012. Clallam County SMP Final Draft Chapter 2, Clallam County, Washington.

208 Clallam County. 2012. Clallam County SMP Final Draft Chapter 3, Clallam County, Washington.

209 Clark, M. 2007. Letter to Dr. Brooks describing the effectiveness of voluntary programs undertaken by the

Washington State Conservation Commission and the state’s 39 Conservation Districts. Washington State

Conservation Commission. PO Box 47721, Olympia, WA 98504-7721.210 Clary, W.P., C.I. Thornton, and S.R. Abt. 1996. Riparian stubble height and recovery of degraded

Streambanks. Rangelands 18:137-140.211 Clogston, S. and S. Hopkins, personal communication to Michelle McConnell, Project Coordinator, May 17,

2007.212 Coffin, B.A. and R.D. Harr. 1992. Effects of forest cover on volume of water delivery to soil during rain-on-

snow. Final Report, Project SH-1. Sediment, Hydrology, and Mass Wasting Steering Committee,

Timber/Fish/Wildlife program, Olympia, Washington.213 Collins, B. D., and D. R. Montgomery. 2002. Forest development, wood jams, and restoration of floodplain

rivers in the Puget Lowland, Washington. Restoration Ecology 10(2):237-247.214 Collins, B. D., D. R. Montgomery, and A. D. Haas. 2002. Historical changes in the distribution and functions of

large wood in Puget Lowland rivers. Canadian Journal of Fisheries and Aquatic Sciences (59):66-76.

215 Collins, B.D., and Sheikh A.J. 2005. Historical reconstruction, classification, and change analysis of Puget

Sound tidal marshes. Project Completion Report to: Washington Dept. Natural Resources, Aquatic

Resources Division. Olympia, Washington 98504-7027. Puget Sound River History Project, Dept. of Earth

and Space Sciences, Seattle, Washington 98195.216 Collins, B.D., D.R. Montomery, and A.J. Sheikh. 2003. Chapter 4: Reconstructing the historic riverine

landscape of the Puget lowland. In: Montgomery, D.R., S. Bolton, D.B. Booth, and L. Wall (eds.). Restoration

of Puget Sound Rivers. University of Washington Press.p. 79-128.

14 of 43

12-9-2013



217 Collins, B.D., D.R. Montomery, and A.J. Sheikh. 2003. Chapter 4: Reconstructing the historic riverine

landscape of the Puget lowland. In: Montgomery, D.R., S. Bolton, D.B. Booth, and L. Wall (eds.). Restoration

of Puget Sound Rivers. University of Washington Press.p. 79-128.218 Community Trade and Economic Development Portal on BAS

http://www.cted.wa.gov/portal/alias__CTED/lang__en/tabID__418/DesktopDefault.aspx

219 Conners, B. M., M. Krkosek, J. Ford, and L. M. Dill. 2010. Coho salmon productivity in relation to salmon lice

from infected prey and salmon farms. Journal of Applied Ecology, Vol. 47. Pp. 1372 - 1377.

220 Connors, B. M., M. Krkosek and L. M. Dill. 2008. Biology Letters. Sea lice escape predation on their host. 4

pp.

221Cooke, Sarah, et al. 2002. Pacific Northwest Forested Wetland Literature Survey Synthesis. Cooke Scientific

Services. November 1, 2002. Forested Wetlands and Silvicultural Practices Workshop presentation

downloads available at: http://www.cookescientific.com/FWWS_Downloads.HTM

222 Correa, G. 2002. Salmon and Steelhead Habitat Limiting Factors WRIA 17, Quilcene-Snow Basin, Washington

State Conservation Commission.223 Correa, G. 2003. Salmon and Steelhead Habitat Limiting Factors WRIA 16, Skokomish-Dosewallips Basin,

Washington Conservation Commission.224 Correa, G. 2003. Salmon and Steelhead Habitat Limiting Factors WRIA 16, Washington Conservation

Commission. 225

Costello, M. J. Proceedings of the Royal Society - Biological Sciences. 2009. How sea lice from salmon farms

may cause wild salmonid declines in Europe and North America and be a threat to fishes elsewhere. 11 pp.

226 Cox, S.E., F.W. Simonds, L. Doremus, R.L. Huffman, and R.M. Defawe. 2005. Ground Water/Surface Water

Interactions and Quality of Discharging Ground Water in Streams of the Lower Nooksack River Basin,

Whatcom County, Washington. U.S. Geological Survey Scientific Investigations Report 2005-5255. 46 p.

227 Crittenden, R.N. 1978. A theoretical model for the water temperature of small clear streams. Ecol. Mod. 5:

207-224.228 Crittenden, R.N. 1992. Salmon at Risk, first edn. Hargrave Publishing, Carlsborg WA.

229 Crittenden, R.N. 1994. Optimum Escapement Computed using the Ricker Spawner Recruit Curve. Fisheries

Research . 20: 215-227.230 Cullinan, T. 2001. Important Bird Areas of Washington, Audubon Washington. Available at:

http://www.audubon.org/chapter/wa/wa/PDFs/IBA-51-92_Western_Lowlands.pdf231 Cummins, K. W. and M. A. Wilzbach. 2005. The inadequacy of the fish-bearing criterion for stream

management. Overview Article, Aquatic Sciences 67: 486-49120. January, 2005.232 Davis, J. 2006. personal communication to ESA Adolfson, comments on preliminary draft I&C report.

October 2006233

Department of Ecology. September 25, 2006. Individual NPDES/State Permits/General Permits. 2 pp.

234 Department of Fish and Wildlife. 2006. Policy 5104.

235Department Of Natural Resources. 2010. Smith & Minors Islands Aquatic Reserve Management Plan.

236 Department of Natural Resources. 2012. Washington State Aquatic Reserves.

237 Desbonnet, A., Pogue, P., Lee, V., and N. Wolff. 1994. Vegetated buffers in the coastal zone: A summary

review and bibliography. Coastal Resources Center Technical Report No. 2064. University of Rhode Island

Graduate School of Oceanography, Narragansett, Rhode Island. 72pp.238 Desbonnet, A., V. Lee, P. Pogue, D. Reis, J. Boyd, J. Willis, and M. Imperial. 1995. Development of coastal

vegetated buffer programs. Coastal Management, Vol. 23, pp. 91-109.

15 of 43

12-9-2013



239 Diana. S. James, Egna. S. Hillary, and more. 2013. Responsible Aquaculture in 2050: Valuing Local Conditions

and Human Innovations Will Be Key to Success.

240 Diefenderfer, H L., K L. Sobocinski, R. M. Thom, C. W. May, S. L. Southard, A. B. Borde, C. Judd, J. Vavrinec,

and N. K. Sather. 2006. Multi-Scale Restoration Prioritization for Local and Regional Shoreline Master

Programs: A Case Study from Jefferson County, Washington. Battelle Marine Sciences Laboratory, Sequim,

Washington Report No. PNWD-3762. November 22, 2006.241 Diefenderfer, H L., K L. Sobocinski, R. M. Thom, C. W. May, S. L. Southard, A. B. Borde, C. Judd, J. Vavrinec,

and N. K. Sather. 2006a. Jefferson County Marine Shoreline Restoration Prioritization: Summary of Methods.

Battelle Marine Sciences Laboratory, Sequim, Washington. Report No. PNWD-3762. November 22, 2006.

242 Diefenderfer, H L., K L. Sobocinski, R. M. Thom, C. W. May, S. L. Southard, A. B. Borde, C. Judd, J. Vavrinec,

and N. K. Sather. 2006b. Multi-Scale Restoration Prioritization for Local and Regional Shoreline Master

Programs: A Case Study from Jefferson County, Washington. Battelle Marine Sciences Laboratory, Sequim,

Washington Report - Not for Distribution.243 Dillaha, T.A. and S.P. Inamdar. 1997. Buffer Zones as Sediment Traps or Sources. In: Buffer Zones: Their

Processes and Potential in Water Protection. Eds: N.E. Haycock, T.P. Burt, K.W.T. Goulding and G. Pinay.

ISBN 09530051 Quest Environmental. Doyle, R.C., G.C. Stanton and D.C. Wolf. 1977. Effectiveness of Forest

and Grass Buffer Strips in Improving the Water Quality of Manure Polluted Runoff. American Society of

Agricultural Engineers Paper No. 77-2501.244 Dillaha, T.A., J.H. Sherrard and D. Lee. 1986. Long-Term Effectiveness and Maintenance of Vegetative Filter

Strips. Wirginia Water Resources Research Center, Virginia Polytechnic Institute and State University Bulletin

153.245 Disclaimers:

246 Downing, J. 1983. The Coast of Puget Sound, Its Processes and Development. Washington Sea Grant

Publication, University of Washington Press, Seattle. 126 pp.247 Dramatic Declines in Wild Salmon Populations Linked to Exposure to Farmed Salmon.

www.sciencedaily.com/releases/2008/02/080212085841.htm 2 pp.

248 Dumbauld, B.R., K.M. Brooks and M.H. Posey. 2001. Response of an Estuarine Benthic Community to

Application of the Pesticide Carbaryl and Cultivation of Pacific Oysters (Crassostrea gigas ) in Willapa Bay,

Washington. Marine Pollution Bulletin Vol. 42, No. 10, pp. 826 - 844.249 Dunne, T., L.B. Leopold. 1978. Water in environmental planning. New York: W.H. Freeman and Co. 818 p.

250 Eagle, J, R. Naylor, W. Smith. 2003. Marine Policy from www.sciencedirect.com. Why farm salmon

outcompete fishery salmon. 12 pp.

251 Easter, F. R. 2007. Review Comments – Supplemental Best Available Science supporting recommendations

for minimum buffer widths in Jefferson County with emphasis on a voluntary wildlife enhancement

program. U.S. Department of Agriculture, Natural Resources Conservation Service. 316 W. Boone Avenue,

Suite 450, Spokane, WA 99201-2348.252 Easterbrook, D.J. 1969. Pleistocene chronology of the Puget Lowland and the San Juan Islands, Washington,

Geological Society of America Bulletin, v. 80, p. 2273-2286.253 Easterbrook, D.J. 1986. Stratigraphy and chronology of Quaternary deposits of the Puget Lowland and

Olympic Mountains of Washington and the Cascade Mountains of Washington and Oregon, In Sibrava, V.,

D.Q. Bowen, and G.M. Richmond, eds., Quaternary glaciation in the northern hemisphere, Quaternary

Science Reviews. p. 145-159.254 Easterbrook, D.J. 1992. Advance and retreat of Cordilleron ice sheets in Washington, USA: Geographie

physique et Quaternaire, 46(1): 51-68.255 Eastern Washington Growth Management Hearings Board. 2006. Digest of Decisions 1992 through August

2006.

16 of 43

12-9-2013



256 Ebbert, J.C., S.S. Embrey, R.W. Black, A.J. Tesoriero, and A.L. Haggland. 2000. Water Quality in the Puget

Sound Basin, Washington and British Columbia, 1996-1998. U.S. Geological Survey Circular 1216. 31pp.

257 Ebersole, J.L. et al. 2006. Juvenile Coho Salmon Growth and Survival across Stream Network Seasonal

Habitats. Transactions of the American Fisheries Society 135:1681–1697, 2006258 Edge, W.D. 2001. Wildlife of Agriculture, Pastures, and Mixed Environments. In: Johnson, D.H. and T.A.

O’Neil (eds). Wildlife-Habitat Relationships in Oregon and Washington. Oregon State University Press,

Corvallis. Pp. 342-360.259 Edwards, D.R., B.T. Larson and T.T. Lim. 2000. Runoff Nutrient and Fecal Coliform Content From Cattle

Manure Application to Fescue Plots. J. American Water Res. Assn. 36(4):711-721.260 Edwards, D.R., T.C. Daniel and P.A. Moore Jr. 1996. Vegetative Filter Strip Design for Grassed Areas Treated

with Animal Manures. Applied Engineering in Agriculture. 12(1):31-38.261 Elston, R., Bonar, D., Brooks, K., Gee, A., Miahle, E., Moore, J., Noel, D., and Stephens, L. 1990b. Studies on

pathogenesis and etiology of circulating sarcomas in Mytilus. 4th Internat. Colloq. Pathol. Marine Aquacul.,

17-21 Sept., Vigo (Pontevedra), Spain, p. 119.262 Elston, R.A., J.D. Moore and K.M. Brooks. 1992. Disseminated Neoplasia of Bivalve Mollusks. Reviews in

Aquatic Sciences, 6(5,6): 405-466.263 Elwha-Dungeness Planning Unit. May 2005. Elwha-Dungeness Watershed Plan, Water Resource Inventory

Area 18 (WRIA 18) and Sequim Bay in West WRIA 17. Published by Clallam County. Volume 1: Chapters 1-3

and 15 appendices; Volume 2: Appendix 3-E.264 Environ International Corporation. 2007. Environmental effects of shellfish aquaculture: An annotated

bibliography. Prepared for Pacific Coast Shellfish Growers Association by Jeffrey P. Fisher, Ph. D. and Karl

Mueller, M. S. October 4, 2007. 169 p.

265 Environment [journal]. April 2004. Commentary: Salmon Farms and Hatcheries [letters to editor re: Naylor

et al. 2003.]. Pp. 40 - 45.266 Environmental Protection Agency (EPA). 1992. Region 10 In-Stream Biological Monitoring Handbook For

Wadable Streams in the Pacific Northwest. EPA 910/9-92-013.267 Environmental Protection Agency (EPA). 2001. Source water protection: its role in controlling disinfection by-

products (dbps) and microbial contaminants. In: R. Clark and B. Boutin (eds.). Controlling disinfection by-

products and microbial contaminants in drinking water. EPA 600R01110: 4-1 to 4-36.

268 Environmental Protection Agency: Compliance Guide for the Concentrated Aquatic Animal Production Point

Source Category. March 1995. 292 pp.269 EPA Region 10. December 2010. Update to the biological evaluation submitted April 17 and August 6, 2008,

regarding EPA action on Washington's marine finfish rearing facility provision contained in the sediment

management standards. 80 pp.

270 ESA Adolfson, Coastal Geologic Services, and Shannon and Wilson. 2008. Jefferson County Shoreline Master

Program Update Project Ecology Grant # G0600343, Final Shoreline Inventory and Characterization Report –

Revised June 2008.271 Euliss, N.H. Jr. and D.M. Mushet. 1999. Influence of agriculture on aquatic invertebrate communities of

temporary wetlands in the prairie pothole region of North Dakota, USA. Wetlands 19:578-583.

272 Fagergren, D., A. Criss, and D. Christensen. 2004. Hood Canal Low Dissolved Oxygen Preliminary Assessment

and Corrective Action Plan. Puget Sound Action Team and Hood Canal Coordinating Council. Publication

#PSAT04-06. May 6, 2004.273 Fahrig, L. 1997. Relative effects of habitat loss and fragmentation on population extinction. Journal of

Wildlife Management. 61(3): 603-610.274 Fahrig, L. 2003. Effects of habitat fragmentation on biodiversity. Annual Revue of Ecology and Systematics.

34:487-515.

17 of 43

12-9-2013



275 Fairbairn, S.E. and J.J. Dinsmore. 2001. Local and landscape-level influences on wetland bird communities of

the prairie pothole region of Iowa, USA. Wetlands 21(1): 41-47. Fore, L.S., J.R. Karr, and R.W. Wisseman.

1996. Assessing invertebrate responses to human activities: Evaluating alternative approaches. Journal of

the North American Benthological Society. 15(2): 212-231.

276 Fairgrieve, W. T. and M. B. Rust. 2003. Interactions of Atlantic salmon in the Pacific northwest. V. Human

health and safety. Fisheries Research 62 (2003) Pp. 329-338

277 Fantoni, B. July 2011. Postmedia News. Male GM salmon can breed with wild species, researchers find.

www.canada.com 3 pp.

278 FAO Fisheries and Aquaculture Department. Food and Agriculture Organization of the United Nations.

Rome, 2010. The State of World Fisheries and Aquaculture - 2010. 197 pp.

279 FAO Fisheries and Aquaculture Technical Paper #529. Food and Agriculture Organization of the United

Nations. Rome, 2009. Integrated Mariculture - A Global Review. 194 pp.

280 Federal Register. 2005a. Volume 70, Number 170. Friday, September 2, 2005. Endangered and Threatened

Species; Designation of Critical Habitat for 12 Evolutionarily Significant Units of West Coast Salmon and

Steelhead in Washington, Oregon, and Idaho.281 Federal Register. 2005b. Volume 70, Number 185. Monday, September 26, 2005. Endangered and

Threatened Wildlife and Plants; Designation of Critical Habitat for the Bull Trout.282 Federal Register. 2006. Volume 71, Number 115. Thursday, June 15, 2006. Endangered and Threatened

Species; Designation of Critical Habitat for the Southern Resident Killer Whale.283 FEMA. 1999. FEMA Riverine Erosion Hazard Areas Mapping Feasibility Study. September 1999. Forest

Practices Board Manual - 02/2002 Determining Fish Use for the Purpose of Typing Waters Section 13 -

Guidelines for Determining Fish Use for the Purpose of Typing Waters

http://www.dnr.wa.gov/forestpractices/board/manual/section13.pdf

284 Finlayson, D., and H. Shipman. 2003. Puget Sound Drift Cells: The importance of waves and wave climate:

Puget Sound Notes, v. 47, p. 1-4.285 Fish and Fishery Products Hazards and Controls Guidance Fourth Edition. 2011. Department of Health and

Human Services, Public Health Services, Food and Drug Administration, Center for Food Safety and Applied

Nutrition Office of Food Safety. United States of America.

286Fisheries Co-Managers of Washington State. 2006. The Salmonid Disease Control Policy, Washington State.

287 Fitzpatrick, Kevin.c. 2011. National Pollutant Discharge Elimination System Waste Discharge Permit, State of

Washington Department of Ecology.

288 Floberg, J., M. Goering, G. Wilhere, C. MacDonald, C. Chappell, C. Rumsey, Z. Ferdana, A Holt, P. Skidmore, T.

Horsman, E. Alverson, C. Tanner, M. Bryer, P. Ianchetti, A. Harcombe, B. McDonald, T. Cook, M. Summers,

and D. Rolph. 2004. Willamette Valley- Puget Trough- Georgia Basin Ecoregional Assessment, Volume One:

Report. Prepared by the Nature Conservancy with support from the Nature Conservancy of Canada,

Washington Department of Fish and Wildlife, Washington Department of Natural Resources, Oregon State

Natural Heritage Information Center and the British Columbia Conservation Data Centre.

289 Flora, D. F. 2009. Evidence of near-zero habitat harm from nearshore development. 10 p.

290Flora, Don. 2008. Correspondence to City of Bainbridge Island, Planning & Communty Development,

Interim Director, Kathy Cook Re: Insects, surf smelt, trees , and buffers in the SMP. May 13, 2008. 1 p.

291 Flora, Don. 2008. Cited buffer science: Its ecogeographic domains. March 2008 Updated. 7 p.

292Flora, Donald F. 2007. A perspective on insects eaten by juvenile Puget Sound salmon. December 2007. 10 p.

293 Flora, Donald F. 2008. Shoreline vegetated buffers good and bad for Puget Sound. May 2008. 12 p.

294 Food and Agriculture Organization of the United Nations (FAO): Code of Conduct for Responsible Fisheries.

1995. 49 pp.

18 of 43

12-9-2013



295 Food and Agriculture Organization of the United Nations (FAO): Technical Guidelines for Responsible

Fisheries 5. Aquaculture Development. 1997; Reprinted 2004. 47 pp.296 Ford, J. S., R A Myers. February 2008. PLOS Biology. A Global Assessment of Salmon Aquaculture Impacts

on Wild Salmonids. www.plosbioloty.org Vol. 6, Issue 2, e33 Pp. 411-417.

297 Forest Ecosystem Management Assessment Team (FEMAT ). 1993. Forest ecosystem management: an

ecological, economic, and social assessment. U.S. Departments of Agriculture, Commerce, and Interior.

Portland, Oregon.298 Freeze R.A., and J.A. Cherry. 1979. Groundwater. Prentice Hall. Englewood Cliffs, New Jersey.

299 Fresh, K. L., D. Rabin, C. Simenstad, E. O. Salo, K. Garrison, and L. Matheson. 1979. Fish ecology studies in

the Nisqually Reach area of Southern Puget Sound, Washington . University of Washington School of

Fisheries, Fisheries Research Institute. FRI-UW-7904. Seattle.300 Fresh, K.L., R.D. Cardwell, and R.R. Koons. 1981. Food habitats of pacific salmon, baitfish, and their

potential competitors and predators in the marine waters of Washington, August 1978 to September 1979 .

Washington Department of Fisheries. Progress Report No. 145. 58pp.301 Fulcher, J. Office of Regulatory Assistance. April 2011. Finfish Aquaculture - Environmental Permit Table

(Clallam County). 5 pp.302 Gardner, J. and D. L. Peterson. January 2003. Making Sense of the Salmon Aquaculture Debate - Executive

Summary; Analysis of issues related to netcage salmon farming and wild salmon in British Columbia; Pacific

Fisheries Resource Conservation Council. 12 pp.303 Gardner, J. and D. L. Peterson. January 2003. Making Sense of the Salmon Aquaculture Debate; Analysis of

issues related to netcage salmon farming and wild salmon in British Columbia; Pacific Fisheries Resource

Conservation Council.304 Gary, H.L., S.R. Johnson and S.L. Ponce. 1983. Cattle grazing impact on surface water quality in a Colorado

Front Range stream. J. Soil and Water Conservation. March-April 1983:124-128.305 GeoEngineers. 2004. Characterization of Functions and Ecosystem-Wide Processes, Jefferson County,

Washington. Prepared for City of Port Townsend. November 23, 2004.306 Gerba, C.P., C. Wallis and J.L. Melnick. 1975. Fate of Wastewater Bacteria and Viruses in Soil. J. Irrigation and

Drainage Division 11572:IR3:157-174.307 Gersib, R. 2001. The Need for Process-Driven, Watershed-based Wetland Restoration in Washington State.

Proceedings of the Puget Sound Research Conference 2001.308 Gerstel, W.J., M.J. Brunengo, W.S. Lingley Jr., R.L. Logan, H.S. Shipman, and T.J. Walsh. 1997. Puget Sound

Bluffs: The Where, Why, and When of Landslides Following the Holiday 1996/97 Storms. Washington

Geology. March 1997. Vol. 25, no. 1.309 Gibbs, James. 1993. Importance of small wetlands for the persistence of local populations of wetland-

associated animals . Wetland Journal. Vol 13, No. 1 (pages 25-31).310 Gillis, D. Farmed Salmon Exposed [video], Pure Salmon Campaign, The Canadian TV. 22:59 minutes.

311 Glasoe, S. and A. Christy. 2004. Literature Review and Analysis: Coastal Urbanization and Microbial

Contamination of Shellfish Growing Areas. Puget Sound Action Team Publication #PSAT04-09.

312 Goldburg, R. J., M. S. Elliott, R. L. Naylor. 2001. Marine Aquaculture in the United States: Environmental

Impacts and Policy Options. Pew Oceans Commission, Arlington, Virginia. 42 pp.313 Golder Associates. 2002. Skokomish- Dosewallips Basin Watershed Planning (WRIA 16) Level 1 Assessment-

DRAFT. Prepared for WRIA 16 Planning Unit Steering Committee, Shelton.314 Golder Associates. 2005. Mulit-Purpose Storage Assessment, Water Resources Inventory Area 20. Prepared

for Clallam County and the WRIA 20 Planning Unit. June 30, 2005.315 Gonor, J. J., J. R. Sedell, and P. A. Benner. 1988. “What we know about large trees in estuaries, in the sea,

and on coastal beaches.” in From the Forest to the Sea: A Story of Fallen Trees. Edited by C. Maser, R.F.

Tarrant, J.M. Trappe, and J.F. Franklin. Pac. NW Res. Sta. USDA Forest Service Gen. Tech. Rept. PNW-GTR-

229.

19 of 43

12-9-2013



316 Gorsline. 2004. Personal communication to ESA Adolfson, comments on preliminary draft I&C report.

October 2006317 Goyette, D. and K.M. Brooks. 1998. Creosote Evaluation: Phase II. Sooke Basin Study – Baseline to 535 Days

Post Construction 1995 – 1996. Published by Environment Canada. 224 West Esplanade, North Vancouver,

British Columbia, Canada V7M 3H7. 568 pp.318 Goyette, D. and K.M. Brooks. 2000. Addendum Report – Continuation of the Sooke Basin Creosote

Evaluation Study (Goyette and Brooks, 1998). Year 4 – Days 1360 and 1540. Published by Environment

Canada. 224 West Esplanade, North Vancouver, British Columbia, Canada V7M 3H7. 51 pp.

319 Granger, T., T. Hruby, A. McMillan, D. Peters, J. Rubey, D. Sheldon, S. Stanley and E Stockdale. 2005.

Wetlands in Washington State, Volume 2: Guidance for Protecting and Managing Wetlands Final.

Washington Department of Ecology Publication 05-06-008.320 Granger, T., T.Hruby, A. McMillan, D. Peters, J. Rubey, D. Sheldon, S. Stanley, and E. Stockdale. 2005.

Wetlands in Washington State, Volume 2: Guidance for Protecting and Managing Wetlands. FINAL. April

2005. Ecology Publication #05-06-008.321 Gray, D., and R.B. Sotir. 1996. Biotechnical and Soil Bioengineering Slope Stabilization: A Practical Guide for

Erosion Control, John Wiley and Sons.322 Groot, C. and L. Margolis. 1991. Pacific salmon life histories. University of British Columbia BC Press.

Vancouver, British Columbia. Reprinted in 2003323 Gustafson R.G., W.H. Lenarz, B.B. McCain, C.C. Schmitt, W.S. Grant, T.L. Builder, and R.D. Methot. 2000.

Status review of Pacific Hake, Pacific Cod, and Walleye Pollock from Puget Sound, Washington. U.S. Dept.

Commer., NOAA Tech. Memo. NMFS-NWFSC- 44, 275 p.324 Haggerty, M., M. McHenry and R. McCoy. 2006. Pysht River Floodplain Inventory and Habitat Assessment.

February 2, 2006. Report submitted to Pacific Salmon Commission. Vancouver, B.C.325 Hall, S. J., A. Delaport, M. J. Philips, M. Beveridge and M. O'Keefe. 2011. Blue Frontiers: Managing the

Environmental Costs of Aquaculture. 103 pp.

326 Hampton, M., G. Griggs, T. Edil, D. Guy, J. Kelly, P. Komar, D. Mickleson, and H. Shipman. 2004. Processes

that Govern the Formation and Evolution of Coastal Cliffs: Formation, Evolution, and Stability of Coastal

Cliffs—Status and Trends. USGS Professional Paper 1693, p. 7-38.327 Hanson, B.S. and D.J. Easterbrook. 1974. Stratigraphy and palynology of late Quaternary sediments in the

Puget Lowland, Washington: Geological Society of America Bulletin, 85: 587-602.

328 Haring, D. 1999. Salmon and Steelhead Habitat Limiting Factors, Water Resource Inventory Area 18.

Washington State Conservation Commission. December 27, 1999.329 Harrison, P.J., D.L. Mackas, B.W. Frost, R.W. Macdonald, and E.A. Crecelius. 1994. An assessment of

nutrients, plankton and some pollutants in the water column of Juan de Fuca Strait, Strait of Georgia and

Puget Sound, and their transboundary transport. Can. Tech. Rep. Fish. Aquat. Sci. 1948:138-172

330 Heifetz, J., M.L. Murphy, and K.V. Koski. 1986. Effects of logging on winter habitat of juvenile salmonids in

Alaskan streams. North American Journal of Fisheries Management 6: 52-58.331 Hemond, H.F. and J. Benoit. 1988. Cumulative Impacts on water quality functions of wetlands.

Environmental Management 12(5):639-653.332

Henning, Julie 2004. An Evaluation of Fish and Amphibian Use of Restored and Natural Floodplain Wetlands.

Final Report EPA Grant CD-97024901-1. Washington Department of Fish and Wildlife, Olympia, Washington,

USA. 81 p. http://www.noplegroup.org/NOPLE/documents/watersheds/pysht/Pysht-

FP%20Report%20Final_1.pdf

333 Herrera Environmental Consultants (Herrera). 2005. City of Bellevue’s Critical Areas Update, 2005 Best

Available Science (BAS) Review. Report to the City of Bellevue, Bellevue, WA. March 23, 2005.

20 of 43

12-9-2013



334 Herrera Environmental Consultants (Herrera). and Northwest Hydraulics. 2002. Reach Analysis. Hoh River in

the vicinity of U.S. Highway 101, milepost 17.6.6 170.2. Prepared for the Washington State Department of

Transportation, Environmental Affairs Office.335 Herrera Environmental Consultants (Herrera). et al. 2002. Reach Analysis: Hoh River in the Vicinity of U.S.

Highway 101, MP 176.6 to MP 170.2. Prepared for WSDOT. April, 2002. 336 Heufelder, G.R. and S.G. Rask. No date. Survival and Transport of Enteric Bacteria and Viruses in the

Nearshore Marine Environment: An Annotated Bibliography. Excerpted on:

http://www.learntitle5.org/Apendix1.htm

337 Hicks, M. 1998a. Evaluating Standards for Protecting Aquatic Life In Washington’s Surface Water Quality

Standards Temperature Criteria. Sponsored by the Washington State Department of Ecology Water Quality

Program Watershed Management Section, Olympia, Washington 98504-7710.

338 Hicks, M. 1998b. Water Quality Antidegradation Implementation Plan. Example of Possible Rule Language to

Replace Chapter 173-201A-070 WAC. Sponsored by the Washington State Department of Ecology Water

Quality Program Watershed Management Section, Olympia, Washington 98504-7710.

339 Hirschi, R. 1999. Critical nearshore habitats, Tala to Kala Point, Jefferson County. Prepared for Jefferson

County Long Range Planning, Port Townsend, 33 p.340 Hirschi, R. 1999. Critical nearshore habitats, Tala to Kala Point, Jefferson County. Prepared for Jefferson

County Long Range Planning, Port Townsend, 33 p. 341 Hirschi, R., T. Doty, A. Keiler, and T. Labbe. 2003a. Juvenile salmonid use of tidal creek and independent

marsh areas in North Hood Canal: summary of first year findings. Point No Point Treaty Council.

342 Hirschi, R., T. Labbe, and A. Carter- Mortimer. 2003b. Shoreline Alterations in Hood Canal and the Eastern

Strait of Juan de Fuca. Point No Point Treaty Council Technical Report 03-1.343 Hirschi, Ron, Thomas Doty, Aimee Keller, and Ted Labbe. 2003. Juvenile Salmonid Use of Tidal Creek and

Independent Marsh Environments in North Hood Canal: Summary of First Year Findings. Port Gamble

S’Klallam Tribe Natural Resources.344 Hirschi. 2003. personal communication to Neil Harrington, Jefferson County.

345 Hofmann, L. and R.E. Ries. 1991. Relationship of soil and plant characteristics to erosion and runoff on

pasture and range. J. Soil and Water Conservation. March-April 1991:143-147.346 Hoh River Trust. 2006. www.hohrivertrust.org (accessed 11/1/06).

347 Hoh River Trust. 2006. www.hohrivertrust.org (accessed 11/1/06).

348 Holcomb, J. 2005. Developing Riparian Guidelines on Forest Service Land in the Southern Appalachians.

Proceedings of the 2005 Georgia Water Resources Conference, April 25-27, at the University of Georgia,

Athens Georgia.349 Hood Canal Coordinating Council. 2004. Impervious Cover Mapping - Hood Canal Chum Salmon ESU for

Hood Canal Coordinating Council. Final Report. June 2004.350 Hood Canal Coordinating Council. 2005. Salmon Habitat Recovery Strategy for the Hood Canal & Eastern

Strait of Juan de Fuca, Version 09-2005. Poulsbo, WA.351 Hood Canal Dissolved Oxygen Program (HCDOP). 2006. www.hoodcanal.washington.edu

352 Hood Canal Dissolved Oxygen Program (HCDOP). 2006. www.hoodcanal.washington.edu

353 Hook, A. 2004. WRIA 20 Technical Assessment Level I, Water Quality and Habitat. Prepared for the WRIA 20

Planning Unit. June 10, 2004.354 Hruby, T., A. McMillan, R. Mraz. 2007. Department of Ecology Comments on the document “Supplemental

best available science supporting recommendations for minimum buffer widths in Jefferson County with

emphasis on a voluntary wildlife enhancement program by Dr. Kenneth M. Brooks. Department of Ecology,

PO Box 47775, Olympia, Washington 98504-7775. 28 pp.

21 of 43

12-9-2013



355 Hruby, T., S. Stanley, T. Granger, T. Duebendorfer, R. Friesz, B. Lang, B. Leonard, K. March, and A. Wald.

2000. Methods for Assessing Wetland Functions, Volume II: Depressional Wetlands in the Columbia Basin of

Eastern Washington. Publication #00-06-47. Washington State Department of Ecology. Olympia,

Washington.356 http://depts.washington.edu/cwws/Outreach/Publications/Salmon%20and%20Turbidity.pdf

357 Hubanks, R.L. 2007. Letter to Dr. Brooks from the NRCS State Conservations regarding the efficacy of

voluntary stewardship programs. U.S. Department of Agriculture. Natural Resources Conservation Service

(NRCS), 316 W. Boone Ave. Suite 450, Spokane, Washington 99201-2348.358 Hutchinson, W., M. Jeffrey, D. O'Sullivan, D. Casement and S. Clarke. Inland Aquaculture Association of

South Australia, Inc. January 2004. Recirculating Aquaculture Systems. Minimum Standards for Design,

Construction and Management. 76 pp.

359 Icicle Acquisition Subsidiary LLC, DBA American Gold Seafoods. June 2009. Fin Fish Aquaculture Compliance

Procedures ['WDFW Operations Permit']. 27 pp.360 Icicle Acquisition Subsidiary, LLC, DBA American Gold Seafoods. June 2009. Employee Guidance for Routine

Handling Procedures to Minimize the Potential for Escapement. 6 pp.361 Icicle Acquisition Subsidiary, LLC, DBA American Gold Seafoods. June 2009. Fish Escape Reporting and

Response Plan [Final]. 7 pp.362 Icicle Acquisition Subsidiary, LLC, DBA American Gold Seafoods. June 2009. Fish Escape Prevention Plans

[Final]. 8 pp.363 Innes, J.L., Er. K.b.H., , K. Martin, and B. Klinkenburg. Forest loss with urbanization predicts bird extirpations

in Vancouver. Biol. Cons. 126 (2005)410-419.364 Intergovernmental Panel on Climate Change. 2007. Climate Change 2007: The Physical Science Basis –

Summary for Policy Makers. Contribution of Working Group I to the Fourth Assessment Report of the

Intergovernmental Panel on Climate Change. February 2007. Available at: http://www.ipcc.ch/

365 Isenhart, T.M., R.C. Schultz and J.P. Colletti. 1998. Watershed restoration and agricultural practices in the

Midwest: Bear Creek of Iowa. Chapter 19, pp. 318-334. Eds. J.E. Williams, C.A. Wood and M.P. Dombeck.

Watershed Restoration: Principles and practices. Am. Fish. Soc. 561 pp.366 Island County. 2012. Shoreline Master Program Chapter 17.05A. Island County Washington.

367 Island County. 2012. Shoreline Master Program Goals and Policies. Island County Washington.

368 Jacobsen, E. E. and M.L. Schwartz. 1981. The use of geomorphic indicators to determine the direction of net

shore-drift. Shore and Beach, 49: 38-42.369 Jefferson Conservation District (2001). Water Quality Screening Report. Water Quality Implementation

Grant 99-02-1M. Puget Sound Grant 99-02-PS. CREP Grant 01-02-CR. Prepared for the Washington State

Conservation Commission, by the Jefferson County Conservation District, Port Hadlock, WA, August 2001.

370 Jefferson County Conservation District. 2003. 2003 Annual Report. Accessed at:

http://www.nosc.org/downloads/nosc_annual2003.pdf

371 Jefferson County Critical Areas Web Page – Studies and Reports:

http://www.co.jefferson.wa.us/commdevelopment/criticalareas.htm

372 Jefferson County Department of Community Development (JCDCD). 2005. Wahl permit decision with SEPA

MLA03-00377.

http://www.co.jefferson.wa.us/commdevelopment/PDFS/FINAL%20WAHL%20decision%207-18-05.pdf

373 Jefferson County Department of Public Works. 1998. Lower Big Quilcene River Comprehensive Flood Hazard

Management Plan, Quilcene, Washington. Prepared for Jefferson County Department of Public Works and

State of Washington, Department of Ecology. Grant Number G9700029.

374 Jefferson County Marine Resources Committee (MRC). 2006. Jefferson County Marine Resource Maps.

Available at: http://jefferson.wsu.edu/mrc/maps.html

22 of 43

12-9-2013



375 Jefferson County Resolution No. 89-86. Emergency Moratorium on Filing and Processing Substantial

Development Permits for the Growth and Culture of Fish in the Marine Waters of Jefferson County (Fish

Farms), November 10, 1986. 1 p.376 Jefferson County. 2002. Jefferson County Parks, Recreation and Open Space Plan. September 2002.

377 Jefferson County. 2012. Moratorium on Atlantic Salmon Fish Farms in the Coastal Waters of Washington

State.

378 Jeffries, S.J., P.J. Gearin, H.R. Huber, D.L. Saul, and D.A. Pruett. 2000. Atlas of Seal and Sea Lion Haulout Sites

in Washington. Washington Department of Fish and Wildlife, Wildlife Science Division, 600 Capitol Way

North, Olympia WA. pp. 150.379 Jennings, J. 2010 Ltr to Landino. EPA's approval of the revisions to Washington's Sediment Management

Standards. 2 pp.

380 Johannessen, J. 1992. Net Shore-Drift of San Juan and parts of Jefferson, Island and Snohomish Counties,

Washington. Shorelands and Coastal Zone Management Program, Washington Department of Ecology,

Olympia, Washington.381 Johannessen, J. 1999. Critical shoreline areas relative to critical nearshore habitats at Tala Point to Kala

Point, Eastern Jefferson County, Washington. Prepared for Jefferson County Planning Department.

Prepared by Coastal Geologic Services, Inc.382 Johannessen, J. 1999. Critical shoreline areas relative to critical nearshore habitats at Tala Point to Kala

Point, Eastern Jefferson County, Washington. Prepared for Jefferson County Planning Department. Prepared

by Coastal Geologic Services, Inc.383 Johannessen, J.W. 1993. Net Shore-Drift of San Juan County and Parts of Jefferson, Island and Snohomish

Counties, Washington. Unpublished M.S. thesis, Western Washington University., Bellingham, 175 p.

384 Johannessen, J.W. and M.C. Chase. 2003. Point Whitehorn to Birch Bay State Park Shoreline Reach Analysis,

Whatcom County WA. Final Report. Prepared for Whatcom County Public Works, River and Flood Division

by Coastal Geologic Services, Inc. 33p.385 Johannessen, J.W., and M.C. Chase. 2002. Coastal Processes, Historic Shoreline Change, and Sediment

Distribution of Portage Bay, Lummi Indian Reservation, WA. Prepared for the Lummi Nation by Coastal

Geologic Services, Inc. Bellingham, Washington.386 Johnson, A.W. and D. Ryba. 1992. A literature review of recommended buffer widths to maintain various

functions of stream riparian areas. King County Surface Water Management Division, Seattle, Washington.

387 Johnson, A.W. and D. Ryba. 1992. A literature review of recommended buffer widths to maintain various

functions of stream riparian areas. King County Surface Water Management Division, Seattle, Washington.

In: Castelle, A.J. and A.W. Johnson, Riparian vegetation effectiveness. Technical Bulletin No. 799 NCASI.

388 Johnson, D.H. and T.A. O’Neil (managing directors). 2001. Wildlife-Habitat Relationships in Oregon and

Washington. Oregon State University Press, Corvallis, OR. 768pp.389 Jones, M.A. 1998. Geologic Framework for the Puget Sound Aquifer System, Washington and British

Columbia. Part of the Regional Aquifer-System Analysis – Puget- Willamette Lowland. U.S. Geological Survey

Professional Paper 1424 – C. 31 pp.390 Jorgensen, J. 1996. Coho, Steelhead, and Chinook production at Elk Creek, Hoh River, Washington. Report

to the Hoh Tribe.391 Kahler, T., M Grassley, and D. Beauchamp. 2000. A Summary of the Effects of Bulkheads, Piers, and Other

Artificial Structures and Shorezone Development on ESA-listed Salmonids in Lakes: Final Report. Prepared

for City of Bellevue, July 2000.392 Kalina, B. 2000. personal communication to Neil Harrington, Jefferson County.

393 Kerwin, J. 2003. The Role of the Washington Department of Fish and Wildlife in Atlantic Salmon

Management [slideshow]; Pacific States Marine Fisheries Council Conference. 45 pp.

23 of 43

12-9-2013



394 Kerwin, J. 2012. New Findings of Regulated Viral Pathogens for Viral Findings at American Gold Seafoods

marine Netpen Facility, State of Washington Department of Fish and Wildlife Fish Program.

395 Keuler, R.F. 1979. Coastal zone processes and geomorphology of Skagit County, Washington. Unpublished

M.S. thesis, Western Washington University., Bellingham, 127 p., 8 maps.396 Keuler, R.F. 1988. Map showing coastal erosion, sediment supply, and longshore transport in the Port

Townsend 30- by 60-minute quadrangle, Puget Sound region, Washington. U.S. Geologic Survey

Miscellaneous Investigations Map I-1198-E, scale 1:100,000.397 King County Department of Natural Resources (KCDNR). 2001. Reconnaissance Assessment of the State of

the Nearshore Report: Including Vashon and Maury Islands (WRIAs 8 and 9). Seattle, WA

398 King County. 2006. King County Shoreline Master Program. DRAFT. December 2006.

399 King County. 2004. Best Available Science, Volume I: A Review of Science Literature. Critical Areas,

Stormwater, and Clearing and Grading Proposed Ordinances. King County Executive Report. Seattle,

Washington. February, 2004.400 Kitsap County Department of Community Development. 2012. Revised Draft of the Kitsap County Shorline

Master Program.

401 Kitsap County Shoreline Master Program - Aquaculture Practices [excerpted]; Code 22.28.070. 3 pp.

402 Klawon, J.E. 2004. Channel Migration Zone Study for the Duckabush, Dosewallips, Big Quilcene, and Little

Quilcene Rivers, Jefferson County, Washington. Bureau of Reclamation Technical Service Center, U.S.

Department of Interior, Denver, Co.403 Klawon, J.E. 2004. Channel Migration Zone Study for the Duckabush, Dosewallips, Big Quilcene and Little

Quilcene Rivers, Jefferson County, Washington. US Department of Interior Bureau of Reclamation.

September 2004.404 Knutson, K.L. and V.L. Naef. 1997. Management Recommendations for Washington’s Priority Habitats:

Riparian. Washington Department of Fish and Wildlife. Olympia, Washington.405 Knutson, K.L. and V.L. Naef. 1997. Management recommendations for Washington’s priority habitats:

riparian. Washington Department of Fish and Wildlife (WDFW), 181 pp. Olympia, Washington.

406 Knutson, M.G., J.R. Sauer, D.A. Olsen, M.J. Mossman, L.M. Hermesath, and M.J. Lannoo. 1999. Effects of

landscape composition and wetland fragmentation on frog and toad abundance and species richness in

Iowa and Wisconsin, USA. Conservation Biology 13(6): 1437-1446.407 Knutson, M.G., W.B. Richardson, D.M. Reineke, B .R. Gray, J.R. Parmelee, and S.E. Weick. 2004. Agricultural

ponds support amphibian populations. Ecological Applications. 14:669-684.408 Komar, P.D. 1976. Beach Processes and Sedimentation. Prentice-Hall, Inc., Englewood Cliffs, 429 p.

409Krause, V. M. February 2010. Research on Contaminants in Farmed Salmon: Science or Marketing? 23 pp.

410 Kresh et al. 2000. Determination of Upstream Boundary Points on Western Washington Streams and Rivers

under the Requirements of the Shoreline Management Act . Water-Resources Investigation Report 96-4208,

USGS. The new jurisdictional points are listed at:

http://www.ecy.wa.gov/programs/sea/sma/st_guide/jurisdiction/rivers.html411 Krkosek, M., A. Morton, J. P. Volpe, and M. A. Lewis. 2009. Sea lice and salmon population dynamics:

effects of exposure time for migratory fish. Proceedings of the Royal Society, Vol. 276. Pp. 2819 - 2828.

412 Krkosek, M., J. S. Ford, A. Morton, S. Lele, M.A. Lewis. December 19, 2008. Response to Comment on

"Declining Wild Salmon Populations in Relation to Parasites from Farm Salmon". Science, Vol. 322. 2 pp.

24 of 43

12-9-2013



413 Krkosek, M., J. S. Ford, A. Morton, S. Lele, R.A. Myers, M. A. Lewis. December 14, 2007. Declining Wild

Salmon Populations in Relation to Parasites from Farm Salmon, Science, Vol. 318. Pp. 1772 - 1775; Plus

Science; Corrections - Erratum, Posted December 19, 2008. Pp. 1 - 2.414 Krkosek, M., M. A. Lewis, A. Morton, L. N. Frazer, and J. P. Volpe. October 17, 2006. Epizootics of wild fish

induced by farm fish. PNAS, Vol. 103, No. 42. Pp. 15506 - 15510.415 Krkosek, M., M. A. Lewis, J. P. Volpe, and A. Morton. 2006. Fish Farms and Sea Lice Infestations of Wild

Juvenile Salmon in the Broughton Archipelago - A Rebuttal to Brooks (2005).Reviews in Fisheries Science,

Taylor & Francis Group, Vol. 14. 11 pp.416 Labbe, T. 2004. personal communication to Neil Harrington, Jefferson County.

417 Labbe, T., A. Adams, and B.Conrad. 2006. Hood Canal riparian landscapes: early historical condition and

ecological changes. Port Gamble S’Klallam Tribe418 Labbe, T., R. Grotefendt, A. Carter-Mortimer, and J. L. Jones. 2005. Dosewallips River Habitat Assessment:

Coupling High-Resolution Remote Sensing and Ground Surveys to Prioritize Aquatic Conservation, Olympic

Mountains, Washington State. Port Gamble S'Klallam Tribe. December 6, 2005. Final Report to: USDI –

Bureau of Indian Affairs, Portland Area Office.419 Labbe, T., R. Grotefendt, A. Carter-Mortimer, and J.L. Jones. 2005. Dosewallips River Habitat Assessment:

Coupling High-Resolution Remote Sensing and Ground Surveys to Prioritize Aquatic Conservation, Olympic

Mountains, Washington State. Final Report to USDI – Bureau of Indian Affairs. December 6, 2005.

420 Ladenburg, C. and S. Sturges. May 1999. Potential Offshore Finfish Aquaculture in the State of Washington;

WA Dept. of Natural Resources Technical Report, Aquatic Resources Division. 67 pp.421

Lambert, G. 2005. Invasive Ascidians in Washington State—Problematic Species and Current Status.

Prepared for WDFW. December 2005. Available at: http://www.psat.wa.gov/Programs/Aquatic.htm

422 Lance, M., S. Richardson, and H. Allen. 2004. State of Washington Sea Otter Recovery Plan. Prepared by

WDFW, Olympia WA.Lambert, G. 2005. Invasive Ascidians in Washington State—Problematic Species and

Current Status. Prepared for WDFW. December 2005. available online at

http://www.psat.wa.gov/Programs/Aquatic.htm (accessed 10/31/06)

423 Larsen, R.E., J.R. Miner, J.C. Buckhouse and J.A. Moore. 1994. Water-Quality Benefits of Having Cattle

Manure Deposited Away From Streams. Bioresource Technology. 48:113-118.424 Larson, K and T. Hunter, 2008. Personal communication to Michelle McConnell, Jefferson County, July 10,

2008.425 Larson, P.A. and L.L. Larson. 2003. Landowner monitoring of stream temperature and bottom sediments.

426 Latham, A. 2006. personal communication to Michelle McConnell, Jefferson County, October 12, 2006.

427 Latham, A. 2007. Letter to Dr. Brooks describing voluntary programs undertaken by the Jefferson County

Conservation District and the beneficial effects of these efforts demonstrated through monitoring. Jefferson

County Conservation District, 205 W. Patison Street, Port Hadlock, Washington 98339-9751.

428 Lebow, S. and K.M. Brooks 2002. Environmental Impact of Treated Wood in Service. Proceedings:

“Enhancing the Durability of Lumber and Engineered Wood Products”, February 11 – 13, 2002, Kissimmee,

Florida. 25 pp.429 Lee, D., T.A. Dillaha, and J.H. Sherrard. 1989. Modeling phosphorus transport in grass buffer strips. J. Env.

Eng. 115:409-427.430 Lehman, G, and C. Noland. December 2010. Kelp Reforestation Made Easy. Can Kelp Plants Be Spored

Successfully On Location Without Using A Laboratory? 38 pp.

431 Lehtinen, R.M., and S.M. Galtowitsch. 2001. Colonization of restored wetlands by amphibians in Minnesota.

American Midland Naturalist 145(2): 388-396.

25 of 43

12-9-2013



432 Lehtinen, R.M., S.M. Galatowitsch and J.R. Tester. 1999. Consequences of habitat loss and fragmentation for

wetland amphibian assemblages. Wetlands 19(1): 1-12.433 Lemieux, J.P., J.S. Brennan, M. Farrell, C.D. Levings, and D. Myers (Editors). 2004. Canadian Manuscript

Report Of Fisheries And Aquatic Sciences No. 2680. Proceedings of the DFO/PSAT Sponsored Marine

Riparian Experts Workshop, Sawwassen, BC, February 17-18, 2004.434 Leon, H.C. and A.L. Driscoll. 1975. The tidal marshes of Jefferson County, Washington. Prepared for:

Jefferson County Planning Department, Port Townsend, Washington435 Leschine, T. M., K.F. Wellman and T. H. Green. 1997. Wetlands’ Role in Flood Protection. October 1997.

Report prepared for: Washington State Department of Ecology Publication No. 97-100.

http://www.ecy.wa.gov/pubs/97100.pdf

436 LeVander, L. October 2007. Response to Comments for the 2007 Draft Marine Salmon Net Pen NPDES

Permits for American Gold Seafoods [8 Puget Sound locations]. WA Department of Ecology, Northwest

Regional Office, Water Quality Section, Industrial Unit. 103 pp. 437 Levings, C. and G. Jamieson. 2001. Marine and estuarine riparian habitats and their role in coastal

ecosystems, Pacific region. Canadian Science Advisory Secretariat, Research Document 2001/109. 41 p.

www.dfo-mpo.gc.ca/csas/.438 Lewis, R. R. III. 1989. Wetland restoration/creation/enhancement terminology: Suggestions for

standardization. Wetland Creation and Restoration: The Status of the Science, Vol. II. EPA 600/3/89/038B.

U.S. Environmental Protection Agency, Washington, D.C. in: National Research Council. 1992. Restoration of

Aquatic Ecosystems: Science, Technology and Public Policy. Washington, DC: National Academy Press.

439 Lim, T.T., D.R. Edwards, S.R. Workman, B.T. Larson and L. Dunn. 1998. Vegetated Filter Strip Removal of

Cattle Manure Constituents in Runoff. Transactions of the Am. Soc. Ag. Eng. 41(5):1375-1381.

440 Long, K. 2004. personal communication to Neil Harrington, Jefferson County.

441 Long, K., N. Harrington, A. Meany, P. Mackrow, P. Dinsmore of North Olympic Salmon Coalition. June 2005.

Intertidal Forage Fish Spawning Site Investigation for East Jefferson, Northwestern Kitsap, and North Mason

Counties 2001-2004. 28 pp.

442 Long, K., N.E. Harrington and P.J. Mackrow. 2003. Forage fish spawning site investigation for Eastern

Jefferson County, Northeastern Kitsap County and North Mason County, North Olympic Salmon Coalition.

Second year status report to the Jefferson County Marine Resources Committee.

443 Long, K., N.E. Harrington and P.J. Mackrow. 2003. Forage fish spawning site investigation for Eastern

Jefferson County, Northeastern Kitsap County and North Mason County, North Olympic Salmon Coalition.

Second year status report to the Jefferson County Marine Resources Committee.

444 Long, K., N.E. Harrington and P.J. Mackrow. 2005. Intertidal forage fish spawning site investigation for

Eastern Jefferson County, Northeastern Kitsap County and North Mason County 2001-2004. Prepared by

North Olympic Salmon Coalition. Final Report to: Salmon Recovery Funding Board, Washington Department

of Fish and Wildlife, Jefferson County Marine Resources Committee, Jefferson County, and City of Port

Townsend.445 Long, K., N.E. Harrington and P.J. Mackrow. 2005. Intertidal forage fish spawning site investigation for

Eastern Jefferson County, Northeastern Kitsap County and North Mason County 2001-2004. Prepared by

North Olympic Salmon Coalition. Final Report to: Salmon Recovery Funding Board, Washington Department

of Fish and Wildlife, Jefferson County Marine Resources Committee, Jefferson County, and City of Port

Townsend.446

Lorenzen. Kai, Beveridge. C.M. Malcolm, Mangle. Marc. 2012. Cultured fish: integrative biology and

management of domestication and interactions with wild fish, Cambridge Philosophical Society.

447 Lowrie, R. 2005. Personal communication to Neil Harrington, Jefferson County.

26 of 43

12-9-2013



448 MacDonald, K., D. Simpson, B. Paulsen, J. Cox, and J. Gendron. 1994. Shoreline Armoring Effects on Physical

Coastal Processes in Puget Sound, Washington. Coastal Erosion Management Studies Volume 5. Shorelands

and Water Resources Program, Washington Department of Ecology, Olympia. Report # 94-78.

449 Magnuson, J.J., H.A. Regier, W.J. Christies, and W.C. Sonzogni. 1980. To Reinhabit and Restore Great Lakes

Ecosystems. In: National Research Council. 1992. Restoration of Aquatic Ecosystems: Science, Technology

and Public Policy. Washington, DC: National Academy Press.450 Magnuson, M.D. 1972. Washington Climate for these counties: Clallam, Grays Harbor, Jefferson, Pacific,

Wahkiakum. Washington State University Cooperative Extension Service451 Mahala, J. 1985. Net shore-drift along the Pacific Coast of Clallam and Jefferson counties, Washington,

unpublished masters thesis, Western Washington University.452 Marine Aquaculture Task Force. January 2007. Sustainable Marine Aquaculture: Fulfilling the Promise;

Managing the Risks. 142 pp.453 May, C. and G. Peterson. 2003. East Jefferson County Salmonid Refugia Report.

454 May, C.W. 2000. Protection of stream riparian ecosystems: a review of best available science. Prepared for

Kitsap County Natural Resources Coordinator. July 2000.455 May, C.W. 2000. Protection of stream-riparian ecosystems: a review of best available science. Prepared for

Kitsap County Natural Resources Coordinator. July 2000.456 McBride, M., and D. B. Booth. 2005. Urban Impacts on Physical Stream Conditions: Effects of Spatial Scale,

Connectivity, and Longitudinal Trends: Journal of the American Water Resources Association, Vol. 41, No. 3,

pp. 565-580.457 McCarthy, E. May 2011. Company sees bright future in famed halibut. 1 P.

458 McConnell, M. 2007. Personal communication to ESA Adolfson, comments on final draft STAC report. April

2007.459 McCreary, F.R. 1975. Soil Survey of Jefferson County Area, Washington. United States Department of

Agriculture, Soil Conservation Service.460 McCreery, S. July 2002. Whatcom County Marine Resources Committee advisory letter to Whatcom County

Council, Natural Resources Committee. 4 pp.461 McDade, M.H., F.J. Swanson, W.A. McKee, J.F. Franklin, and J. VanSickle. 1990. Source distances for coarse

woody debris entering small streams in western Oregon and Washington. Canadian Journal of Forest

Research. 20: 326-330.462 McKenna, R. 2006. Advisory Memorandum: Avoiding Unconstitutional Takings of Private Property. State of

Washington, Office of the Attorney General.463 McMillan, B. and N. Gayeski. 2006. Historic Steelhead Abundance: Washington NW Coast and Puget Sound

(With Particular Emphasis on the Hoh River). Wild Salmon Center. Available at:

http://wildsalmoncenter.org/pubs/mcmillan_gayeski.php

464 Meacham, P and Pleus, A. 2011. Washington State Aquatic Nuisance Species Committee Report to the 2011

Legislature, Washington Department of Fish and Wildlife, Washington. 465 MegaKelp [webpage]. 2011. Kelp Farming. 1 p.

466 Menashe, E. 2001. “Bio-structural” Erosion Control: Incorporating Vegetation in Engineering Designs to

protect Puget Sound Shorelines. In: Puget Sound Research 2001, Conference Proceedings, Puget Sound

Action Team. Bellevue, WA, 2001.467 Menashe, E., 1993, Vegetation Management: A guide for Puget Sound bank property owners, Shorelands

and Coastal Zone Management Program, Washington Department of Ecology, Olympia, WA.

468 Miner, J.R., J.C. Buckhouse, and J.A. Moore. 1992. Will a water trough reduce the amount of time hay-fed

livestock spend in the stream (and therefore improve water quality)? Rangelands. 14(1):35-38.

469 Minton, S.A. 1968. The fate of amphibians and reptiles in a suburban area. Journal of Herpetology 2(3-4):

113-116.

27 of 43

12-9-2013



470Molnar, J. L., R. L. Gamnoa, C. Revenga, and M.D. Spalding. 2008. Assessing the global threat of invasive

speices to marine biodiversity; The Ecological Society of America, Frontiers in Ecology. 8 p.

471 Monoham, C. 2004. Riparian buffer function along lowland agricultural streams. Watershed Review. 2(1):1-

2.472 Montgomery, D. R. 2004. Geology, geomorphology, and the restoration ecology of salmon. GSA Today,

v.14, no.11. November, 2004.473 Montgomery, D. R., S. Bolton, D. B. Booth, and L. Wall, editors. 2003. Restoration of Puget Sound rivers.

University of Washington Press, Seattle.474 Montgomery, D.R. and J.M. Buffington. 1993. Channel classification, prediction of channel response, and

assessment of channel conditions. Washington State Dept. of Natural Resources, Timber/Fish/Wildlife

Agreement, Rpt. TFW-SH10-93-002, 84 p.475 Moore, J.A. and J.R. Miner. 1997. Stream Temperatures – Some Basic Considerations. Oregon State

University Extension Service Bulletin EC 1489.476 Morgan, D.S. and J.L. Jones. 1999. Numerical Model Analysis of the Effects of Ground-Water Withdrawals on

Discharge to Streams and Springs in Small Basins Typical of the Puget Sound Lowland, Washington. U.S.

Geological Survey Water-Supply Paper 2492. 73 pp.477 Morrill, J. C.; R. C. Bales, and M. H. Conklin. 2005. Estimating Stream Temperature from Air Temperature:

Implications for Future Water Quality. Journal of Environmental Engineering© ASCE. January 2005.

478 Morton, A., R. Routledge, M. Krkosek. 2008. Sea Louse Infestation in Wild Juvenile Salmon and Pacific

Herring Associate with Fish Farms off the East-Central Coast of Vancouver Island, British Columbia. North

American Journal of Fisheries Management 28. Pp. 523 - 532.479 Mosley, J.C., P.S. Cook, A.J. Griffis and J. O’Laughlin. 1997. Guidelines for Managing Cattle Grazing in Riparian

Areas to Protect Water Quality: Review of Research and Best Management Practices Policy. Idaho Forest,

Wildlife and Range Policy Analysis Group, University of Idaho Report No. 15. 64 pp.

480 Munn, M.D., R.W. Black, A.L. Haggland, M.A. Hummling, and R.L. Huffman. 1999. An assessment of stream

habitat and nutrients in the Elwha River basin: Implications for restoration. U.S. Geological Survey Water-

Resources Investigations Report 98-4223. 38 p.481 Murray, M and L. Ferguson. 1998. The Status of Marine Protected Areas in Puget Sound, Volume II: MPA

Site Profiles & Appendices. March 1998. Prepared for the Puget Sound/Georgia Basin International Task

Force Work Group on Marine Protected Areas with support from Puget Sound Action Team U.S.

Environmental Protection Agency, Region 10. 482 Naiman, R. J. et al. 2002. Dead Wood Dynamics in Stream Ecosystems. USDA Forest Service Gen. Tech. Rep.

PSW-GTR-181. 2002483 Naiman, R.J., Bilby, R.E., and Bisson, P.A. 2000. Riparian Ecology and Management in the Pacific Coastal Rain

Forest. BioScience, 50(11) 2000, 996-1011.484

Nash, C. and F. W. Waknitz. 2003. Interactions of Atlantic salmon in the Pacific Northwest. I. Salmon

enhancement and the net-pen farming industry. Fisheries Research 62 (2003) Pp. 237-254

485 Nash, C. E. (editor). 2001. NOAA Technical Memorandum NMFS-NWFSC-49: The net-pen salmon farming

Industry in the Pacific Northwest. U.S. Department of Commerce, National Oceanic and Atmospheric

Administration, National Marine Fisheries Service. 125 pp.486 Nash, C. E. 2003. Interactions of Atlantic salmon in the Pacific Northwest VI. A synopsis of the risk and

uncertainty. Fisheries Research 62. Pp. 339 - 347.487 Nash, C.E., K.M. Brooks, W.T. Fairgrieve, R.N. Iwamoto, C.V.W. Mahnken, M.B. Rust, M.S. Strom and F.W.

Waknitz. 2001. The Net-pen Salmon Farming Industry in the Pacific Northwest. NOAA Technical

Memorandum NMFS-NWFSC-49. 125 pp.

28 of 43

12-9-2013



488 Nash, C.E., P.R. Burbridge, and J.K. Volkman. December 2005. NOAA Technical Memorandum NMFS-NWFSC-

71: Guidelines for Ecological Risk Assessment of Marine Fish Aquaculture; Prepared at the NOAA Fisheries

Service Manchester Research Station International Workshop April 11 - 14, 2005. 105 pp.

489 National Aquaculture Act of 1980. Act of September 26, 1980, Public Law 96-362, 94 Stat. 1198, 16 U.S.C.

2801, et seq. 16 pp.490 National Oceanic and Atmospheric Administration Draft Aquaculture Policy - Draft for Public Comment.

February 2011. 11 pp.491 National Oceanic and Atmospheric Administration. 2011. Olympic Coast National Marine Sanctuary Final

Management Plan and Environmental Assessment.

492 National Park Service. 2006. Final Environmental Impact Statement (EIS) on Elwha River Ecosystem

Restoration Implementation (PDF).

493 Naugle, D.E., R.R. Johnson, M.E. Estey, and K.F. Higgins. 2001. A landscape approach to conserving wetland

bird habitat in the prairie pothole region of eastern South Dakota. Wetlands 21: 1-17.

494 Naylor, R. L., J. Eagle, and W. L. Smith. October 2003. Salmon Aquaculture in the Pacific Northwest: A Global

Industry with Local Impacts. Environment 45:8. Pp. 18 - 39.495 Naylor, R. L., R. J. Goldburg, J. Priavera, N. Kautsky, M. C. M. Beveridge, J. Clay, C. Folke, J. Lubchenco, H.

Mooney and M. Troell. Winter 2001. Issues in Ecology. Effects of Aquaculture on World Fish Supplies.

Number 8. 14 pp.

496 Naylor, R. L., S. L. Williams, D. R. Strong. Science, New Series. November 2001. Aquaculture - A Gateway

for Exotic Species. Vol. 294, No. 5547. Pp. 1655-1656

497 Naylor, R., and M. Burke. 2005. Aquaculture and Ocean Resources: Raising Tigers of the Sea. Annual Review

of Environmental Resources. 30. Pp. 185 - 218.498 Naylor, R., K. Kindar, I. A. Fleming, R. Goldburg, S. Williams, J. Volpe, F. Whoriskey, J. Eagle, D. Kelso, and M.

Mangel. May 2005. Fugitive Salmon: Assessing the Risks of Escaped Fish from Net-Pen Aquaculture.

BioScience, American Institute of Biological Sciences, Vol. 55 No. 5. Pp. 427-437.

499 Neibline, W.H. and E.E. Alberts. 1979. Composition and yield of soil particles transported through sod strips.

ASAE Paper 79-2065. Am. Soc. Ag. Eng.500 Nelson, E. 2000. Sediment Budget of a Mixed-use, Urbanizing Watershed. Proceedings AWRA’s 1999 Annual

Water Resources Conference - Watershed Management to Protect Declining Species. December 1999,

Seattle, WA. American Water Resources Association, 469.501 Newman, J.R. 1967. The Harper Encyclopedia of Science, Revised Edition. Edited by James R. Newman.

Harper & Row Publishers. New York. (page 477).502 Newton, J.A., S.L. Albertson, K. Nakata, and C. Cishe. 1998. Washington State Marine Water Quality in 1996

and 1997, No. 98-338. Department of Ecology, Olympia, WA.503 Nightingale, B. 2000. Summary report from a literature and data search on the status of marine resources in

Jefferson County, WA. Prepared for the Jefferson County Marine Resources Committee, 67p.

504 Nightingale, B. 2002. Shoreline inventory summary report, Jefferson County Planning Department, p. 94 pp.

505NOAA - National Oceanic and Atmospheric Administration. June 2011. Marine Aquaculture Policy. 12 pp.

506 Norris, J. 2007. Personal communication to ESA Adolfson. May 2007.

507 NOSC - North Olympic Salmon Coalition. 2005. Forage Fish Spawning Site Investigation for East Jefferson

County. Forage Fish Spawning Around Port Townsend . 1 P.

508 Nysewander, D.R. and J.R. Evenson. 1999. Status and trends for selected diving duck species examined by

the marine Bird Component, Puget Sound Ambient Monitoring Program (PSAMP). Washington Department

of Fish and Wildlife

29 of 43

12-9-2013



509 O’Connor, J. E., M. A. Jones, and T. L. Haluska. 2003. Flood plain and channel dynamics of the Quinault and

Queets Rivers, Washington, USA. Geomorphology 51:31-59.510 O’Connor, J.E., M.A. Jones, and T.L. Haluska. 2003. Flood plain and channel dynamics of the Quinault and

Queets Rivers, Washington, USA. Geomorphology 51 (2003): 31–59.511 O'Harra, D. December 2007. Fish farm lice annihilate BC's wild salmon. 4 pp.

512Olson, P.L. and J.A. Silver. 2005. Groundwater and Heat Transport in the Hoh River Watershed: A Pilot Study

on the Impact of Forest Practices on Ground and Surface Water Interactions. CREES Groundwater under the

Pacific Northwest Conference. November 2, 2005: http://www.swwrc.wsu.edu/conference2005/

513 Olympic National Park (ONP). 2006. Questions and Answers about the Proposed Reintroduction of Fishers to

Olympic National Park. January 2006.514 Owens, L.B., W.M. Edwards, and R.W. Van Keuren. 1983. Surface Runoff Water Quality Comparisons

Between Unimproved Pasture and Woodland.515 Palmer, M.A., E.S. Bernhardt, J.D. Allan, P.S. Lake, G. Alexander, S. Brooks, J. Carr, S, Clayton, C.N. Dahm, J.

Follstad Shah, D.L. Galat, S.G. Loss, P. Goodwin, D.D. Hart, B. Hassett, R. Jenkinson, G.M. Kondolf, R. Lave, J.L.

Meyer, T.K. O’Donnell, L. Pagano, And E. Sudduth. 2005. Standards for ecologically successful river

restoration. Journal of Applied Ecology. 42, 208-217.516 Parametrix Inc., Adolfson Associates, Earth Systems, Coastal Geologic Services, and Jennifer Thomas and

Associates. 2005. Final Whatcom County Critical Areas Ordinance Best Available Science Review and

Recommendations for Code Update. Prepared for Whatcom County Planning and Development Services,

Bellingham, WA. May 2005.517 Parametrix, Inc., Olympic Park Institute, and Olympic National Park. 2005. Environmental Assessment: OPI

and Rosemary Inn Historic District Improvement Project. Prepared for Olympic Park Institute and Olympic

National Park. February 2005.518 Parametrix, Inc., Pacific Groundwater Group, Inc., Montgomery Water Group, Inc., and Caldwell and

Associates. 2000. Stage 1 technical assessment as of February 2000 of WRIA 17. Prepared for WRIA 17

planning group. October 2000.519 Paul, M.J., and J.L. Meyer. 2001. Streams in the urban landscape. Annual Review of Ecology and Systematics

32: 333–365.520 Paulson, A.J., C.P Konrad, L.M. Frans, M. Noble, C. Kendall, E.G. Josberger, R.L. Huffman, and T.D. Olsen.

2006. Freshwater and saline loads of dissolved inorganic nitrogen to Hood Canal and Lynch Cove, western

Washington. U.S. Geological Survey Scientific Investigations Report 2006-5106.

521Pentec Environmental. 2006. Best Available Science Review of Proposed Overwater Structure Restrictions in

Blakely Harbor, Bainbridge Island, Washington. Prepared for Blakely Harbor Group. October 24, 2006. 22 p.

522 Pentec Environmental. 2001. Use of Best Available Science in City of Everett Buffer Regulations. Report to

the City of Everett Planning and Community Development Department. Edmonds, WA. March 15, 2001.

523 Penttila, D. 2000. Documented spawning areas of the pacific herring (Clupea ), surf smelt (Hypomesus ) and

Pacific Sand Lance (Ammodytes ) in East Jefferson County. Washington State Department of Fish and

Wildlife, Marine Resources Division Manuscript Report.524 Penttila, D.E. 1978. Studies of the surf smelt (Hypomesus pretiosus ) in Puget Sound. Wash. Dept. Fisheries

Technical Report 42. 47pp.525 Penttila, D.E. 1995. Investigations of the spawning habitat of the Pacific sand lance (Ammodytes

hexapterus ) in Puget Sound. Puget Sound Research ’95 Proceedings, Bellevue, WA.526 Perkins Geosciences and TerraLogic GIS. 2004. Lower Hoh Channel Migration Study Summary Report.

Prepared for the Hoh Indian Tribe, June 2004.527 Perkins Geosciences and TerraLogic GIS. 2004. Lower Hoh River Channel Migration Study. Prepared for the

Hoh Tribe .

30 of 43

12-9-2013



528 Perkins, S. J. Perkins Geosciences. 2003. Lower Hoh Channel Migration Study. Report to the Hoh Tribe.

529 Perkins, S. J., 1993. Green River Channel Migration Study. King County Department of Public Works, Surface

Water Management Division, Seattle, WA.530 Perkins, S. J., 1996. Channel Migration in Three Forks of the Snoqualmie River. King County Department of

Public Works, Surface Water Management Division, Seattle, WA.531 Perkins, S.J. 2006. Channel Migration Hazard Maps for the Dosewallips, Duckabush, Big Quilcene, and Little

Quilcene Rivers Jefferson County Washington, Final Report. Perkins Geosciences, Deming WA.

532 Perkins, S.J. and J. Klawon. 2004. Channel Migration Hazard Maps for the Dosewallips, Duckabush, Big

Quilcene, and Little Quilcene Rivers, Jefferson County, Washington. Final Draft Report. Prepared for

Jefferson County Natural Resources Division. October 2004.533 Pess, G.R. et al. 2002. Landscape characteristics, land use, and coho salmon (Oncorhynchus kisutch)

abundance, Snohomish River, Washington, U.S.A . Canadian Journal of Fisheries and Aquatic Science. 59:

613–623 (2002) DOI: 10.1139/F02-035.534 Pessl, F., Jr., D.P. Dethier, D.B. Booth, and J.P. Minard. 1989. Surficial geology of the Port Townsend

1:100,000 quadrangle. Washington. U.S. Geological Survey Miscellaneous Investigations Map I-1198F.

535 Peterson, G. 2005. Estimating Impervious Surface in the Hood Canal/Eastern Strait of Juan de Fuca Summer

Chum ESU Geographic Area Under Buildout Conditions. 2005 Mid-year Report. Submitted to Hood Canal

Coordinating Council.536 Peterson, N.P. and L.M. Reid. 1984. Wall-base channels: their evolution, distribution, and use by juvenile

coho salmon in the Clearwater River, Washington. Pages 215-225 in J.M. Walton and D. B. Houston, editors.

Proceedings of the Olympic wild fish conference. Peninsula College, Fisheries Technology Program, Port

Angeles, Washington.537 Petterssen, S. 1958. Introduction to Meteorology. Second Edition, McGraw-Hill Book Company, Inc. New

York. 327 pp.538 Phillips, R.C. 1994. The ecology of eelgrass meadows in the Pacific Northwest: A community profile. USFWS

tech. rep. FWS/OBS-84/24. U.S. Dept. of the Interior Fish and Wildlife Service.539 Phinney, L.A. and P. Bucknell. 1975. A Catalog of Washington Streams and Salmon Utilization, Volume 2,

Coastal Region. Washington Department of Fisheries.540 PHYSorg.com. April 7, 2011. Fish farm waste can drift to distant shores. [webpage] 1 p.

541 Pitts, J. L. 2009. Aquaculture Issues [email attachment]. 1 p.

542 Pitts, J. L. 2009. Negative Net Pen in SMPlan (4) [email attachment]. 5 pp.

543 Pitts, J. L. 2009. Negative Net Pen in SMPlan [email attachment]. 4 pp.

544 Pitts, J. L. 2009. Net Pen History in WA marine waters [email attachment'. 4 pp.

545 Pitts, J. L. 2009. Stats Myths and Books on Aquaculture [email attachment]. 1 p.

546 Pizzimenti, J.J. 2002. Efficacy and Economics of Riparian Buffers on Agricultural Lands – Phase I, Work in

Progress. GEI Consultants, Inc., 6950 S. Potomac Street, Suite 200, Englewood, CO 80112.547 Pizzimenti, J.J. 2005. Efficacy and Economics of Riparian Buffers on Agricultural Lands – State of Washington

Phase II. Technical report submitted the Washington Agricultural Caucus, P.O. Box 1207, Moxee, WA 98936.

136 pp.548 Point No Point Treaty Council and Washington Department of Fish and Wildlife. 2003. 2003 Management

Framework Plan and Salmon Runs’ Status for the Strait of Juan de Fuca Region. http://jamestowntribe.org/1-

2003%20Management%20Plan%20-%20PNP.pdf

549 Pollock M. M. and D. Werner. 2003. Comparison of Summer Stream Temperatures in Managed and

Unmanaged Watersheds of the Western Olympic Peninsula. Draft Version 1.1. Report to the Department

of Natural Resources. NOAA NW Fisheries Science Center. April 29, 2003.

31 of 43

12-9-2013



550 Pollock M. M., G. R. Pess, T. J. Beechie, and D. R. Montgomery. 2004. The Importance of Beaver Ponds to

Coho Salmon Production in the Stillaguamish River Basin, Washington, USA. North American Journal of

Fisheries Management 24:749–760, 2004.551 Pollock, M. M. and P. M. Kennard, 1998. A low-risk strategy for preserving riparian buffers needed to

protect and restore salmonid habitat in forested watersheds of Washington State, 10,000 Years Institute,

Bainbridge Island, WA.552 Pollock, M. M., and P. M. Kennard. 1998. A low-risk strategy for preserving riparian buffers needed to

protect and restore salmonid habitat in forested watersheds of Washington State. 10,000 Years Institute,

Bainbridge Island, Washington.553

Pollution Control Hearings Board - State of Washington. November 1998. Marine Environmental

Consortium, Washington Environmental Council, Protect our Waters & Natural Resources and Washington

Trout v. State of Washington, Department of Ecology, Global Aqua-USA LLC and Cypress Island, Inc. 39 pp.

554 Porath, M.L., P.A. Momont, T. DelCurto, N.R. Rimbey, J.A. Tanaka and M. McInnis. Offstream water and

trace mineral salt as management strategies for improved cattle distribution. 2002. J. Animal Sci. 80:346-

356.555

Price, M. H. H., A. Morton and J. D. Reynolds. November 2010. Evidence of farm-induced parasite

infestations on wild juvenile salmon in multiple regions of coastal British Columbia, Canada. Pp. 1925-1932.

556 Price, M. H. H., S. L. Proboszcz, R. D. Routledge, A. S. Gottesfeld, C. Orr, J. D. Reynolds. February 2011. Sea

Louse Infection of Juvenile Sockeye Salmon in Relation to Marine Salmon Farms on Canada's West Coast.

Vol. 6, Issue 2, e16851. 9 pp.

557 Puget Sound Action Team (PSAT). 2001. Sound Facts: Eelgrass. Available at:

http://www.psat.wa.gov/Publications/Fact_sheets/eelgrass.pdf

558 Puget Sound Action Team (PSAT). 2005. Regional Nearshore and Marine Aspects of Salmon Recovery in

Puget Sound. Prepared for Shared Strategy for Puget Sound. June 28, 2005.559 Puget Sound Action Team (PSAT). 2006. Aquatic Nuisance Species News. October 6, 2006.

http://www.psat.wa.gov/Programs/ANS/tunicate_update_100606.htm (accessed 10/31/06).

560 Puget Sound Cooperative River Basin Team. 1992. The Discovery Bay Watershed. Discovery Bay Watershed

Management Committee, Jefferson County, Washington.561 Puget Sound Partnership. 2008. Discussion Paper - Habitat and Land Use. July 11, 2008. 102 p.

562Puget Sound Partnership. 2008. Discussion Paper - Species and Biodiversity Topic Forum. July 11, 2008. 49 p.

563 Puget Sound Partnership. 2009. Puget Sound Action Agenda, Protecting and Restoring the Puget Sound

Ecosystem by 2020. December 1, 2008, Updated May 27, 2009, 213 p.

http://www.psp.wa.gov/downloads/AA2009/Action_Agenda_FINAL_063009.pdf

564 Puget Sound Technical Recovery Team. 2002. Planning Ranges and Preliminary Guidelines for the Delisting

and Recovery of the Puget Sound Chinook Salmon Evolutionarily Significant Unit.

http://www.nwr.noaa.gov/Salmon-Recovery-Planning/Recovery-Domains/Puget-

Sound/upload/trtpopesu.pdf

565 Puget Sound Water Quality Action Team. 2002. 2002 Puget Sound Update: Eighth Report of the Puget

Sound Ambient Monitoring Program. Puget Sound Water Quality Action Team. Olympia, Washington

566 Raincoast Research Society. 2002. What is wrong with salmon farming? 8 pp.

567 Rapp, A., D.H. Murray-Rust, C. Christiansson and L. Berry. 1972. Soil erosion and sedimentation in four

catchments near Dodoma, Tanzania. Geografiska Annaler, Series A, 54A(3): 255-318.568 Rapp, C.F. and T.B. Abbe. 2003. A Framework for Delineating Channel Migration Zones. Ecology Publication

#03-06-027. November 2003. http://www.ecy.wa.gov/pubs/0306027.pdf

569 Rapp, R.G. and Abbe, R.G. 2003. A Framework for Delineating Channel Migration Zones. Washington

Department of Ecology Publication #03-06-027.

32 of 43

12-9-2013



570 Redman, S., D. Myers, and D. Averill. 2005. Regional Nearshore and Marine Aspects of Salmon Recovery in

Puget Sound. Puget Sound Action Team. From contributions by the editors and Kurt Fresh and Bill Graeber,

NOAA Fisheries. Delivered to Shared Strategy for Puget Sound for inclusion in their regional salmon recovery

plan. June 28, 2005.571 Reeves, G.H., K.M. Burnett, and E.V. McGarry. 2003. Sources of large wood in the main stem of a fourth-

order watershed in coastal Oregon. Canadian Journal of Forest Resources 33:1363-1370.572 Rensel, J. E. 2001. Salmon net pens in Puget Sound: Rules, performance criteria and monitoring. An

overview of Net pen permitting and monitoring in Washington State. Global Aquaculture Advocate 4(1), pp

66 -69.573 Rensel, J. E. and J. R. M. Forster. July 2007. Final Report - Beneficial Environmental Effects of Marine Finfish

Mariculture. 62 pp.

574 Rensel, J. E. November 2003. Water quality and sediment impact management of finfish net pens in

Washington State; Pacific States Marine Fisheries Commission Conference [slideshow]. 34 pp.575 Rensel, J. E., D. A. Kiefer, J. R. M. Forster, D. L. Woodruff, and N. R. Evans. 2007. Offshore finfish mariculture

in the Strait of Juan de Fuca. Bulletin of Fisheries Research and Development Agency No. 19. Pp. 113 - 129.

576 Rensel, J. February 2009. Aquaculture Monitoring, modeling and performance standards for net pens.

Seriola and Cobia Aquaculture Dialogue (SCAD) 19-20 February 2009, Seattle, WA [slideshow]. 63 pp.

577 Revised Code of Washington (RCW) 36.07A: Growth Management – Planning by selected Counties and

Cities.578 Revised Code of Washington (RCW) 76.09: Forest Practices.

579 Revised Code of Washington (RCW) 86.09: Flood control districts – 1937 act

580 Revised Code of Washington (RCW) 90.58: Shoreline Management Act of 1971.

581 Rice, C.A. 2006. Effects of Shoreline Modification on a Northern Puget Sound Beach: Microclimate and

Embryo Mortality in Surf Smelt (Hypomesus pretiosus ). Estuaries and Coasts 29(1): 63–71.582 Richter, K.O. 1996. Criteria for the restoration and creation of wetland habitats of lenticbreeding

amphibians of the Pacific Northwest. Pages 72-94 in K.B. Macdonald and F. Weinmann (eds.), Wetland and

Riparian Restoration: Taking a Broader View. EPA 910-97-007. Seattle, Washington: U.S. EPA, Region 10.

583 Richter, K.O. and A.L. Azous. 1995. Amphibian occurrence and wetland characteristics in the Puget Sound

basin. Wetlands 15:305-312.584 Richter, K.O. and A.L. Azous. 2001a. Amphibian distribution, abundance, and habitat use. Chapter 5, pages

143-166 in A.L. Azous and R.R. Horner (eds.), Wetlands and Urbanization: Implications for the Future. New

York: Lewis Publishers.585 Richter, K.O. and A.L. Azous. 2001b. Bird distribution, abundance, and habitat use. Chapter 7, pages 201-220

in A.L. Azous and R.R. Horner (eds.), Wetlands and Urbanization: Implications for the Future. New York:

Lewis Publishers.586 Robins, J.W.D. 1979. Impact of Unconfined Livestock Activities on Water Quality. Rumsey, C.J. 1996. The

effect of three residual vegetation heights on streambank sediment deposition and vegetation production.

M.S. Thesis, University of Wyoming at Laramie. Cited in Mosley et al. (1997).

587 Roering, J.J., K.M. Schmidt, J.D. Stock, W.E. Dietrich and D.R. Montgomery. 2003. Shallow landsliding, root

reinforcement, and the spatial distribution of trees in the Oregon Cost Range, Canadian Geotechnical

Journal 40: 237-253.588 Rogers. A. Luke, Peacock. J. Stephanie, and more. 2013. Modeling Parasite Dynamics on Farmed Salmon for

Precautionary Conservation Management of Wild Salmon.

589 Rosen, J.. 1977. Increasing shoreline erosion rates with decreasing tidal range in the Virginia Chesapeake

Bay: Chesapeake Science 18: 383-386.

33 of 43

12-9-2013



590 Rot, Byron. 1996. Productivity of floodplain complexes for fish production: Elk Creek, Hoh River Washington.

Report to the Hoh Tribe.591 Rot, Byron. 1996. The importance of floodplain backchannels to overwintering salmonids: a literature

review with specific references to the floodplain at RM 19 on the Hoh River, Washington. Report

commissioned by the Hoh Indian Tribe.592 Ruckelshaus, M. H. and M. M. McClure. 2007. Sound Science: Synthesizing ecological and socioeconomic

information about the Puget Sound ecosystem. prepared in cooperation with the Sound Science

collaborative team. U.S. Dept. of Commerce, National Oceanic & Atmospheric Administration (NMFS),

Northwest Fisheries Science Center. Seattle, Washington.93 p.593 Rumsey, C.J. 1996. The effect of three residual vegetation heights on streambank sediment deposition and

vegetation production. M.S. Thesis, University of Wyoming at Laramie. Cited in Mosley et al. (1997).

594 Salafsky, N., R. Margoluis, K. Redford. 2001. Adaptive Management: A Tool for Conservation Practitioners.

World Wildlife Fund, Inc. Washington, DC.595 Schmitt, T.J., M.G. Dosskey, and K.D. Hoagland. 1999. Filter Strip Performance and Processes for Different

Vegetation, Widths, and Contaminants. J. Environ. Qual. 28:1479-1489. Semlitsch, R.D. 2000. Principles for

management of aquatic-breeding amphibians. Journal of Wildlife Management 64(3).

596 Schreiner, E.G. and B.D. Winter. 2005. Restoration of the Elwha River Ecosystem, Results of a Biological

Monitoring/Research Workshop: March 18-19, 2003. U.S. Department of the Interior, U.S. Geological

Survey. Port Angeles, WA.597 Schueler, T.R., and H.K. Holland (eds.). 2000a. Article 1: The Importance of Imperviousness. In The Practice

of Watershed Protection. The Center for Watershed Protection, Ellicott City, MD. 598 Schueler, T.R., and H.K. Holland (eds.). 2000b. Article 19: Dynamics of Urban Stream Channel Enlargement.

In The Practice of Watershed Protection. The Center for Watershed Protection, Ellicott City, MD.

599 Schueler, T.R., and H.K. Holland (eds.). 2000c. Article 20: Stream Channel Geometry Used to Assess Land Use

Impacts in the Northwest. In The Practice of Watershed Protection. The Center for Watershed Protection,

Ellicott City, MD. 600 Schueler, T.R., and H.K. Holland (eds.). 2000d. Article 129: The Peculiarities of Perviousness. In The Practice

of Watershed Protection. The Center for Watershed Protection, Ellicott City, MD. 601 Schwartz, M.L., B.D. Harp, B.E. Taggart, and M. Chrzastowski. 1991. Net shore-drift in Washington state:

Shorelands and Coastal Zone Management Program. WA Dept. of Ecology, Olympia, WA.602 Shackleford, B. 1988. Rapid Bioassessments of Lotic Macroinvertebrate Communities: Biocriteria

Development. Arkansas Department of Pollution Control and Ecology, 8001 National Drive, Little Rock,

Arkansas 72209. 45 pp.603 Shared Strategy Development Committee. 2007. Puget Sound Salmon Recovery Plan. Seattle, Washington.

(http://www.sharedsalmonstrategy.org/plan/toc.htm)

604Shared Strategy. Draft Puget Sound Salmon Recovery Plan. Nearshore chapter prepared by the Puget Sound

Action Team. June 30, 2005. http://www.psat.wa.gov/Programs/salmon_recovery/section2.pdf

605 Sheldon, D. et al. 2004. Washington Wetlands. Vol. I. Dept. of Ecology, Lacey WA

606 Sheldon, D., T. Hruby, P. Johnson, K. Harper, A. McMillan, T. Granger, S. Stanley and E. Stockdale. 2005.

Wetlands in Washington State, Volume 1: A Synthesis of the Science – Final. Washington State Department

of Ecology Publication #05-06-006.607 Shipman, H. 1991. Coastal barriers and accreted landforms in Washington state: Inventory and

characterization. Shorelands and Coastal Zone Management Program, Washington Department of Ecology,

Olympia.

34 of 43

12-9-2013



608 Shipman, H. 2001. Coastal Landsliding on Puget Sound: A review of landslides occurring between 1996 and

1999. Publication #01-06-019, Shorelands and Environmental Assistance Program, Washington Department

of Ecology, Olympia.609 Shipman, H. 2004. Coastal Bluffs and Sea Cliffs on Puget Sound, Washington. In M.A. Hampton and G.B.

Griggs (eds.). Formation, Evolution, and Stability of Coastal Cliffs-Status and Trends. USGS Professional

Paper 1693. United States Geological Survey. p81-94.610 Shwartz, M. 2011. Aquaculture: Tracking Waste From Fish Farms [video]. 3:01 minutes.

611 Sias, Joan. 2003. Estimation of multi-season evapotranspiration in relation to vegetation cover for regions

with rainy winter/ dry-summer climate. Prepared for the Upland Processes Science Advisory Group of the

Committee for Cooperative Monitoring, Evaluation, and Research (CMER). October 2, 2003.

http://www.dnr.wa.gov/forestpractices/adaptivemanagement/cmer/publications/TFW-UPSAG-01-001.pdf

612 Silver, J. . personal communication to ESA Adolfson, comments on preliminary draft I&C report. October

2006613 Silver, J.A. 2004. Integrated Population and Environmental Baseline Evaluation for Bull Trout in the Lower

Hoh River, Jefferson County, Washington. Report prepared by 10,000 Years Institute for Jefferson County

Public Works Department. July 2004. Bainbridge Island, WA.614 Silverman, H. 2002. Ever Wonder What's Being That Farmed Salmon Steak? Facts and Footnotes. Ecotrust.

6 pp.615 Simenstad, C.A., K.L. Fresh, and E.0. Salo. 1982. The role of Puget Sound and Washington Coastal estuaries in

the life history of Pacific salmon: an unappreciated function, p. 343- 364. In V. S. Kennedy (ed.), Estuarine

Comparisons, Academic Press, New York.616 Simenstad, C.A.. 2000. Appendix Report 3.5. Estuarine Landscape Impacts on Hood Canal and Strait of Juan

de Fuca Summer Chum Salmon and Recommended Actions. In Summer Chum Salmon Conservation

Initiative An Implementation Plan to Recover Summer Chum in the Hood Canal and Strait of Juan de Fuca

Region. Washington Department of Fish and Wildlife Point-No-Point Treaty Tribes. April 2000.

617 Simonds, F.W., C.I. Longpré, and G.B. Justin. 2003. Hydrogeology of the Chimacum Creek Basin and Surface

Water / Groundwater Interactions in the Quilcene Bay Area, Eastern Jefferson County, Washington. US

Geological Survey, prepared in cooperation with the Jefferson Count Department of Natural Resources.

Tacoma, WA.618 Skagit County Resolutions 14302, 14698 and 15188 - Regarding Extension of [1987] Fish Net Pen

Moratorium. 1992/93. 8 pp.619 Smith, C.J. 2000. Salmon and steelhead habitat limiting factors in the North Washington coastal streams of

WRIA 20. Washington State Conservation Commission.620 Smith, C.J. and J. Caldwell. 2001. Salmon and steelhead limiting factors in the Washington coastal streams

of WRIA 21. Washington State Conservation Commission621 Snohomish County, 2005. Draft Summary of Best Available Science for Critical Areas. June 2005. Snohomish

County Planning and Development Services. Everett, WA.622 Soehl, D. 2001. Personal communication to Neil Harrington, Jefferson County.

623 Speck. 2004. Personal communication to Neil Harrington, Jefferson County.

624 Spence, B.C., Lomnicky, G.A., Highes, R.M. and Novitzki, R.P. 1996. An ecosystem approach to salmonid

conservation. TR-450196-6057. Mantech Environmental Research Services Corporation.625 Stanley, S., J. Brown, and S. Grigsby. 2005. Protecting Aquatic Ecosystems: A Guide for Puget Sound Planners

to Understand Watershed Processes. Washington State Department of Ecology. Publication #05-06-027.

Olympia, Washington.626 Stanley, S., J. Brown, and S. Grigsby. 2005. Protecting Aquatic Ecosystems: A Guide for Puget Sound Planners

to Understand Watershed Processes. Washington State Department of Ecology. Publication #05-06-027.

Olympia, Washington.

35 of 43

12-9-2013



627 Steeger, C. and J. Dulisse. 2002. Characteristics and Dynamics of Cavity Nest Trees in Southern British

Columbia. USDA Forest Service General Technical Report pSSW-GTR-181.628 Steelhead and Salmon Conservation Society, Inc [webpage]

629 Steinblums, I.J., H.A. Froehlich, and J.K. Lyons. 1984. Designing Stable Buffer Strips for Stream Protection. J.

Forestry 82(1)49:52.630 Strickland, R.M. 1983. The Fertile Fjord: Plankton in Puget Sound. Seattle, WA. Washington Sea Grant,

University of Washington.631 Strivastava, P., D.R. Edwards, T.C. Daniel, P.A. Moore Jr., and T.A. Costello. 1996. Performance of Vegetative

Filter Strips with Varying Pollutant Source and Filter Strip Lengths. Trans. Am. Soc. Ag. Eng. 39(6):2231-2239.

632 Susewind, K. Upland Fin-Fish Hatching and Rearing General Permit: A National Pollutant Discharge

Elimination System (NPDES) and State Waste Discharge General Permit for Discharges Associated with

Upland Fin-Fish Hatching and Rearing Activities. WA Department of Ecology, Water Quality Program. 40 pp.

633 Swanson, F.J., L.E. Benda, S.H. Duncan, G.E. Grant, W.F. Megahan, L.M. Reid, and R.R. Ziemer. 1987. Mass

failure and other processes of sediment production in Pacific Northwest forest landscapes. Pages 9-38 in

E.O. Salo and T.W. Cundy, eds. Streamside management : forestry and fishery interaction. College of Forest

Resources Contribution Number 57, University of Washington, Seattle, Washington.

634 SweetSpring: a new source of sustainable salmon. Www.sweetspringsalmon.com/ 1 P.

635 Symposium on the Ecology and Management of Dead Wood in western Forests. November 2-4, 1999. Reno,

Nevada. http://www.fs.fed.us/psw/publications/documents/gtr-181/

636 Tabor, R.W. and Cady, W.M. 1978. Geological map of the Olympic Peninsula, Washington: U.S. Geological

Survey Miscellaneous Investigation Series Map I-994, scale 1:125,000.637

The Honourable Bruce I. Cohen, Commissioner. 2012. The Uncertain Future of Fraser River Sockeye Volume

1 ( The Sockeye Fishery), Minister of Public Works and Government Services Canada.

638The Honourable Bruce I. Cohen, Commissioner. 2012. The Uncertain Future of Fraser River Sockeye Volume

2 ( Causes of the Decline), Minister of Public Works and Government Services Canada.

639The Honourable Bruce I. Cohen, Commissioner. 2012. The Uncertain Future of Fraser River Sockeye Volume

3 ( Recommendations - Summary - Process), Minister of Public Works and Government Services Canada.

640 Thom RM, GD Williams, AB Borde, JA Southard, SL Sargeant, DL Woodruff, JC Laufle, and S

Glasoe. 2005. "Adaptively Addressing Uncertainty in Estuarine and Near Coastal Restoration

Projects." Journal of Coastal Research. JCR 40(sp. iss.):94-108.641 Thom RM, GD Williams, and HL Diefenderfer. 2005. "Balancing the Need to Develop Coastal Areas with the

Desire for an Ecologically Functioning Coastal Environment: Is Net Ecosystem Improvement

Possible?" Restoration Ecology 13(1):193-203. doi:10.1111/j.1526-100X.2005.00024.x

642 Thom, R. M., A. B. Borde, G. D. Williams, J. A. Southard, S. L. Blanto and D. L. Woodruff,. 2001. Effects of

Multiple Stressors on Eelgrass Restoration Projects. Battelle Marine Sciences Laboratory, Pacific Northwest

National Laboratory. In Puget Sound Research.643 Thom, R., L. Antrim, A. Borde, W. Gardiner, D. Schreffler, P. Farley, J. Norris, S.Willey-Echeverria, and T.

McKenzie. 1998. Puget Sound's eelgrass meadows: Depth distribution and spatial patchiness. Puget Sound

'98,Conference Proceedings, March 12-13, 1998, Seattle, WA.644 Thompson, R.E. 1994. Physical oceanography of the Strait of Georgia-Puget Sound-Juan de

36 of 43

12-9-2013



645 Thompson, R.E. 1994. Physical oceanography of the Strait of Georgia-Puget Sound-Juan de Fuca Strait

System. Institute of Ocean Sciences, Sidney, BC. P36-100. In Wilson, R.C.H., R.J. Beamish, F. Atkins and J. Bell

(eds). Review of the marine environment and biota of Strait of Georgia, Puget Sound and Juan de Fuca

Strait: Proceedings of the BC/WA Symposium on the Marine Environment, Jan 13 and 14, 1994. Can. Tech.

Rep. Fish Aquat. Sci. 1948: 398p.646 Thorsen, G.W. 1987. Soil Bluffs + Rain = Slide hazards. Washington Geologic Newsletter 15(3): 3-11.

647 Tironi, A., V. H. Marin, and F. J. Campuzano. 2010. A Management Tool for Assessing Aquaculture

Environmental Impacts in Chilean Patagonian Fjords: Integrating Hydrodynamic and Pellets Dispersion

Models. Environmental Management, 45. Pp. 953 - 962.648 Todd, A.H. 2000. Making Decisions About Riparian Buffer Width. International Conference on Riparian

Ecology and Management in Multi-Land Use Watersheds. American Water Res. Assn. 445-450.

649 Todd, S., N. Fitzpatrick, A. Carter-Mortimer , and C. Weller. 2006. Historical Changes to Estuaries, Spits, and

Associated Tidal Wetland Habitats in the Hood Canal and Strait of Juan de Fuca Regions of Washington

State. Final Report. Point No Point Treaty Council Technical Report 06-1. December 2006.

650 Todd, S., N. Fitzpatrick, A. Carter-Mortimer, and C. Weller. 2006. Historical Changes to Estuaries, Spits, and

Associated Tidal Wetland Habitats in the Hood Canal and Strait of Juan de Fuca Regions of Washington

State. Final Report. Point No Point Treaty Council Technical Report 06-1. December 2006.

651 Todd, Steve. 2006. Point No Point Treaty Council Habitat Biologist, personal communication to Michelle

McConnell, Jefferson County Department of Community Development, October 2006.652 Tomassi, S. 2004. Management Strategies for Core Wildlife Habitat Areas in Eastern Jefferson County. Final

Draft. Prepared for Jefferson County Department of Natural Resources. March 1, 2004.

653 Tomassi, Suzanne. 2004. Management Strategies for Core Wildlife Habitat Areas in Eastern Jefferson

County . Prepared for Jefferson County Natural Resources Division. March 1, 2004.654 Tubbs, D.W. 1974. Causes, Mechanisms and Prediction of Landsliding in Seattle. Unpublished dissertation,

University of Washington, November 1975.655 U.S. Department of Commerce Aquaculture Policy. 2011.

656 United States Bureau of Reclamation (2004) , Geomorphic Assessment of the Hoh River, Washington State,

Hoh River Miles 17 to 40: Oxbow Canyon and Mount Tom Creek U.S. Department of the Interior, Bureau of

Reclamation Technical Service Center, Denver, Colorado.657 United States Department of Agriculture. 2007. Assessing Infectious Disease Emergence Potential in the U.S.

Aquaculture Industry Phase 1: U.S. Aquaculture Industry Profile.

658 United States Department of Agriculture. 2007. Assessing Infectious Disease Emergence Potential in the U.S.

Aquaculture Industry Phase 2: Infectious Disease Emergence Qualitative Risk Assessment Tool:

Development Phase 3: Infectious Disease Emergence Qualitative Risk Assessment Tool: Application and

Results.

659 United States Environmental Protection Agency (EPA). 2006. Puget Sound Georgia Basin Ecosystem:

Species at Risk. Available at: http://epa.gov/region10/psgb/indicators/species_at_risk/

660 United States Fish and Wildlife Service (USFWS). 2005. Listed and Proposed Endangered and Threatened

Species and Critical Habitat; Candidate Species; and Species of Concern in Jefferson County. Western

Washington Fish and Wildlife Office. Revised December 20, 2005.661 United States Geological Survey (USGS). 1998. Determination of Upstream Boundaries on Western

Washington Streams and Rivers Under the Requirements of the Shoreline Management Act of 1971. By

David L. Kresch, Water-Resources Investigations Report 96-4208. Prepared in cooperation with Washington

State Department of Ecology.

37 of 43

12-9-2013



662 United States Geological Survey (USGS). 2000. An Assessment of Available Data and Information and

Possible Methods of Analysis of the Water Resources of the Elwha-Morse Watershed, Washington. Tacoma,

WA. March 2000.663 US Army Corps of Engineers. 1987. Corps of Engineers Wetlands Delineation Manual. Technical Report Y-87-

1. Department of the Army, Waterways Experimental Station, Corps of Engineers, PO Box 631, Vicksburg,

Mississippi 39180-0631.664 US Department of Commerce. June 2011. Aquaculture Policy. 3 pp.

665 US Department of Commerce. Aquaculture Policy - Draft for Public Comment. February 2011. 2 pp.

666 US Department of Commerce. Aquaculture Policy. May 2005. 2 pp.

667 USBOR et al. 2004. Geomorphic Assessment of Hoh River in Washington State - Hoh River Miles 17 to 40:

Oxbow Canyon to Mount Tom Creek. Report to Jefferson County Public Works. US Bureau of Reclamation.

July, 2004.668 USDA, Forest Service (USFS). 1998. Forest plan monitoring and evaluation report - 1998. Idaho Panhandle

National Forests. Coeur d'Alene, ID. 166 pp. [835k]669 USDA, Forest Service (USFS). 1999. Forest plan monitoring and evaluation report - 1999. Idaho Panhandle

National Forests. Coeur d'Alene, ID. 77 pp. [795k]670 USDA, Forest Service (USFS). 1999. Forest plan monitoring and evaluation report - 1999. Idaho.

671 Vaccaro, J.J., A.J. Hansen Jr., and M.A. Jones. 1998. Hydrogeologic Framework of the Puget Sound Aquifer

System, Washington and British Columbia. Part of the Regional Aquifer-System Analysis – Puget- Willamette

Lowland. U.S. Geological Survey Professional Paper 1424 – D. 77 pp.672 Van Metre, P., B. Mahler, and E. Furlong. 2000. Urban sprawl leaves its PAH signature. Environmental

Science Technology 34:4064-4070.673 Van Sickle, J., and S.V. Gregory. 1990. Modeling inputs of large woody debris to streams from falling trees.

Canadian Journal of Forest Research 20: 1593-1601. 674 Venayagamoorthy, S. K., O. B., Fringer, J.R.. Koseff, A. Chiu, and R.L.. Naylor. 2009. Numerical modeling of

aquaculture dissolved waste transport in a coastal embayment. Woods Institute Technical Report, Stanford

University. 30 pp.675 Volpe, J. March 21, 2001. Science Friction: the incredible story of Atlantic salmon in BC [slideshow]. 47 pp.

676 Volpe, J.P. 2001. Super unnatural: Atlantic salmon in B.C. waters. David Suzuki Foundation. 37 pp.

677 Volpe, J.P., Anholt, B.R., Glickman, B.W. 2001. Competition among juvenile Atlantic salmon (Salmo salar) and

steelhead (Oncorhynchus mykiss): relevance to invasion potential in British Columbia. Canadian Journal of

Fisheries and Aquatic Science, v. 58, p. 197-207.678 Volpe, J.P., Taylor, E.B, Rimmer, D.W., and Glickman, B.W. June 2000. Evidence of natural reproduction of

aquaculture escaped Atlantic salmon in a coastal British Columbia river. Conservation Biology: vol. 14, no. 3,

p. 899903.679 Volpe, John P., E. Taylor, D. Rimmer and B. Glickman. June 2000. Evidence of Natural Reproduction of

Aquaculture-Escaped Atlantic Salmon in a Coastal British Columbia River, Conservation Biology, Vol. 14, No.

3, Pp. 899-903.

680 Wa Department of Fish & Wildlife (K. Knight-Principal Author). June 2009 "Draft". Land Use Planning for

Salmon, Steelhead and Trout. 119 pp.

681 Wa Department of Fish & Wildlife. Priority Habitats and Species (PHS) Interactive Mapping.

www.wdfw.wa.gov/mapping/phs/ 1 pp.

682 WA Department of Fish & Wildlife. April 2008. Aquatic Farm Registration Form. 2 pp.

683 WA Invasive Species Council. 2008. Invaders at the Gate: Invasive Species Strategic Plan. WA State

Recreation and Conservation Office. 78 pp.684 WAC 222-16 Definitions: http://www.dnr.wa.gov/forestpractices/rules/wac222-16.pdf

38 of 43

12-9-2013



685 Waknitz, F.H. et al. 2002. NOAA Technical Memorandum NMFS-NWFSC 53: Review of Potential Impacts of

Atlantic Salmon Culture on Puget Sound Chinook Salmon and Hood Canal Summer-Run Chum Salmon

Evolutionarily Significant Units. 98 pp.686 Waknitz. F. W., R. N. Iwamoto, and M. S. Strom. 2003. Interactions of Atlantic Salmon in the Pacific

Northwest. IV. Impacts on the local ecosystems. Fisheries Research 62. Pp. 307-328687 Warrick, J. 2005. Dam Removal on the Elwha River in Washington—Nearshore Impacts of Released

Sediment. USGS Soundwaves Newsletter: February 2005. Accessed at:

http://soundwaves.usgs.gov/2005/02/research.html.688 Washington Conservation Commission. 1999. Habitat Factors Limiting Salmon Success in Washington State.

Washington Conservation Commission.689 Washington Department of Ecology (Ecology), 2007. Draft Watershed Characterization for Jefferson County ,

Version 2 . Shorelands and Environmental Assistance Program. January 26, 2007. Prepared for Jefferson

County Department of Community Development.690 Washington Department of Ecology (Ecology), 2007. Draft Watershed Characterization for Jefferson County,

Version 3. Shorelands and Environmental Assistance Program. May 16, 2007. Prepared for Jefferson County

Department of Community Development.691 Washington Department of Ecology (Ecology). Puget Sound Shorelines. Available at:

http://www.ecy.wa.gov/programs/sea/pugetsound/species/shorebird.html692 Washington Department of Ecology (Ecology). 1978. Coastal Zone Atlas of Washington, Volume Eleven,

Jefferson County. General editor Carl Youngman.693 Washington Department of Ecology (Ecology). 2001 Shoreline Photos Shorelands and Environmental

Assistance Program694 Washington Department of Ecology (Ecology). 2005. Stormwater Management Manual for Western

Washington. Publication Numbers 05-10-029 through 05-10-032. February 2005.695 Washington Department of Ecology (Ecology). 2006. Cleanup sites.

696 Washington Department of Ecology Shorelands - CMZ page:

http://www.ecy.wa.gov/programs/sea/sma/st_guide/jurisdiction/CMZ.html

697 Washington Department of Fish and Wildlife (WDFW) and Point No Point Treaty Council (PNPTC). 2000.

Summer Chum Salmon Conservation Initiative, An Implementation Plan to Recover Summer Chum in the

Hood Canal and Strait of Juan de Fuca Region. Washington Department of Fish and Wildlife and Point-No-

Point Treaty Tribes. April 2000.698 Washington Department of Fish and Wildlife (WDFW), Salmonid Screening, Habitat Enhancement and

Restoration Section (SSHEAR). 2001. 2000 Annual Report. Environmental Restoration Division, Habitat

Program. Accessed at: http://wdfw.wa.gov/hab/tapps/reports/2000sshear.pdf

699 Washington Department of Fish and Wildlife (WDFW). 2006. Aquatic Invasive Species Fact Sheets:

Tunicates. Available at: http://wdfw.wa.gov/factshts/tunicates_fact_mar06.htm700 Washington Department of Fish and Wildlife (WDFW). 2006. Aquatic Invasive Species Factheets: Tunicates.

Available at: http://wdfw.wa.gov/factshts/tunicates_fact_mar06.htm701 Washington Department of Fish and Wildlife (WDFW). 2000. Fish Passage Barrier and Surface Water

Diversion Screening Assessment and Prioritization Manual. Accessed at:

http://wdfw.wa.gov/hab/engineer/mnl2000.pdf

702 Washington Department of Fish and Wildlife (WDFW). 2000a. Critical spawning habitat for herring, surf

smelt, sand lance, and rock sole in Puget Sound Washington. Washington Department of Fish and Wildlife,

Fish Program. Olympia, Washington.703 Washington Department of Fish and Wildlife (WDFW). 2000b. Salmonid and Steelhead Stock Inventory

(SaSSI). Accessed August 2006. Available at: http://wdfw.wa.gov/fish/sassi/intro.htm704 Washington Department of Fish and Wildlife (WDFW). 2006. Aquatic Invasive Species Fact Sheets:

Tunicates. Available at: http://wdfw.wa.gov/factshts/tunicates_fact_mar06.htm

39 of 43

12-9-2013



705 Washington Department of Fish and Wildlife Checklist for Reviewing Development Regulations

http://wdfw.wa.gov/hab/checklis.pdf Policy Issues Relating to the Growth Management Act:

Comprehensive Plans and Development Regulations http://wdfw.wa.gov/hab/bottoml.pdf Priority Habitats

and Species http://wdfw.wa.gov/hab/phspage.htm706 Washington Department of Fisheries. January 1990. Final programmatic environmental impact statement:

Fish culture in floating net pens - Response to Comments. Prepared by Parametrix. 529 pp. [Volume 2 of 3]

707 Washington Department of Fisheries. January 1990. Final programmatic environmental impact statement:

Fish culture in floating net pens - Technical Appendices. Prepared by Parametrix. 312 pp. [Volume 3 of 3]

708 Washington Department of Fisheries. January 1990. Final programmatic environmental impact statement:

Fish culture in floating net pens. Prepared by Parametrix. 161 pp. [Volume 1 of 3]709 Washington Department of Health (WDH). 2006a Early warning system summary for shellfish growing areas

on Jefferson County. Available at: http://www.doh.wa.gov/ehp/sf/growreports.htm#county

710 Washington Department of Health (WDH). 2006a Early warning system summary for shellfish growing areas

on Jefferson County. Available at: http://www.doh.wa.gov/ehp/sf/growreports.htm#county

711 Washington Department of Health (WDH). 2006b. Recreational Shellfish Beach Closures Due to Biotoxin or

Pollution. Jefferson County. Available at: http://www.doh.wa.gov/ehp/sf/BiotoxinProgram.htm

712 Washington Department Of Health (WDOH). 2005. Report to the Puget Sound Action Team. Nitrogen

Reducing Technologies for Onsite Wastewater Treatment Systems. Office Of Environmental Health & Safety.

Wastewater Management Program Division. June 2005.713 Washington Department of Natural Resources (WDNR). 1991. Rain on Snow Zones. GIS mapping and

metadata prepared by WDNR Forest Practices Division. Olympia, WA.714 Washington Department of Natural Resources (WDNR). 2001. Washington State ShoreZone Inventory,

Nearshore Habitat Program, Olympia, WA.715 Washington Department of Natural Resources (WDNR). 2005. Draft Environmental Impact Statement on the

Policy for Sustainable Forests. April 2005.716 Washington Fish Growers Association. Fall 2002. Code of Conduct: Saltwater Salmon Net-Pen Operations. 8

pp.717 Washington Forest Practices Board (WFPB). 1997. Standard Methodology for Conducting Watershed

Analysis, Version 4.0. Appendix D, pg. D-18. Washington Department of Natural Resources, Olympia, WA.

718 Washington Sea Grant. 2000. Draft Northwest Straits Overview, A Science Gap Report. Seattle, Washington.

April 2000. Prepared for the Northwest Straits Commission.719 Washington State Administrative Code (WAC) 173-18-200. Shoreline management act- streams and rivers

constituting shorelines of the state – Jefferson County.720 Washington State Administrative Code (WAC) 173-26-221: General master program provisions.

721 Washington State Administrative Code (WAC) 197-11. SEPA Rules.

722 Washington State Administrative Code (WAC) 220-110. Hydraulic Code Rules.

723 Washington State Administrative Code (WAC) 222. Forest Practices Rules.

724 Washington State Administrative Code (WAC) Chapter 173-201A WAC, Water Quality Standards for Surface

Waters of the State of Washington.725 Washington State Administrative Code (WAC) Chapter 173-204 WAC, Sediment Management Standards.

726 Washington State Department of Agriculture (WSDA). 2007. Spartina Eradication Program 2006 Progress

Report. WSDA Spartina Program , Olympia, WA.

40 of 43

12-9-2013



727 Washington State Department of Agriculture (WSDA). 2001 Spartina Management Plan for Hood Canal.

WSDA Spartina Program, Olympia, WA.728 Washington State Department of Community, Trade and Economic Development (CTED). 2003. Critical

Areas Assistance Handbook: Protecting Critical Areas Within the Framework of the Washington Growth

Management Act. Washington State Department of Community, Trade and Economic Development.

Olympia, November 2003, pg.1-2.729 Washington State Department of Ecology - Wetland Mitigation in Washington State Part 2: Developing

Mitigation Plans, Version 1. March, 2006 – Publication #06-06-0116.730 Washington State Department of Ecology - Washington State Wetland Rating System for Western

Washington Revised. WDOE Publication 04-06-025. 134 pp. 2004.731 Washington State Department of Ecology -2005. Wetlands in Washington State Volume 1: A Synthesis of

the Science. WDOE Publication #05-06-006, March, 2005.732 Washington State Department of Ecology -Wetlands in Washington State Volme 2: Guidance for Protecting

and Managing Wetlands. WDOE Publication #05-06-008. April, 2005.733 Washington State Department of Ecology, U.S. Army Corps of Engineers (Seattle District), and U.S.

Environmental Protection Agency Region 10, 2006. Wetland Mitigation in Washington State Part I: Agency

Policies and Guidance.734 Washington State Department of Health. 2005. 2004 Shoreline Survey of the Hood Canal 4 Shellfish Growing

Area. Zabel-Lincoln.735 Washington State Department of Health; Fish Facts for Healthy Nutrition; Wild vs. Farmed Salmon

[webpage]. Last Updated December 2010. 3 pp.736 Washington State Department of Natural Resources. Forest Practices Board Manual.

737 Washington State Fish and Wildlife Commission. 1997. Final Joint WDFW/Tribal Wild Salmonid Policy.

December 5, 1997. http://www.wdfw.wa.gov/fish/wsp/joint/final/finalwsp.pdf

738 Washington State Forest Practices Board. 2004. Forest Practices Board Manual. Section 2 - Standard

Methods for Identifying Bankfull Channel Features and Channel Migration Zones. 2004.

http://www.dnr.wa.gov/forestpractices/board/manual/

http://www.dnr.wa.gov/forestpractices/board/manual/section2.pdf739 Washington State Horse Council. 1989. Horse Waste and Land Management Manual.

740 Washington State Parks (WSP). 2006. Parks Information website. Available at:

http://www.parks.wa.gov/parks/741 Washington State University (Pullman) Cooperative Extension Bulletin EM4806. WDOE. 2004. Washington

State Department of Ecology - Washington State Wetland Rating System for Western Washington Revised.

WDOE Publication 04-06-025. 134 pp.742 Washington State WAC. December 1995. Sediment Management Standards. Chapter 173-204 WAC. 28

pp.

743 WDFW and PNPTC. 2000. Summer Chum Salmon Conservation Initiative, An Implementation Plan to

Recover Summer Chum in the Hood Canal and Strait of Juan de Fuca Region. Washington Department of

Fish and Wildlife and Point-No-Point Treaty Tribes. April 2000.744 Weitkamp, D.E. Parametrix. December 2010. Estuarine Habitat Use by Young Salmon - An Annotated

Bibliography. 135 pp.745 Welch, E.B. J.M. Jacoby, and C.W. May. 2003. Stream Quality. In: R.J. Naiman and R.E. Bilby, eds. River

ecology and management: lessons from the Pacific coastal ecoregion. Springer-Verlag New York Inc., New

York. pp. 69-85.746

Western Rivers Conservancy. 2006. Washington Campaigns, Creating a Salmon Sanctuary, Hoh River,

Jefferson County, Washington. http://www.westernrivers.org/camp_wa_hoh.html (accessed 11/2/06).

747 Western Washington Growth Management Hearings Board. 2006. Digest of Decisions 4th Edition.

(December 2006)

41 of 43

12-9-2013



748 Weston, D. Science Applications International Corporation. December 1986. Recommended Interim

Guidelines for the Management of Salmon Net-Pen Culture in Puget Sound. WA Department of Ecology. 54

pp.749 Whatcom County Shoreline Management Program; Title 23. August 8, 2008. 246 pp.

750 Wheeler, W. 2006. Communication to the Jefferson County Critical Area Ordinance Review Committee

documenting land-use patterns. Available from the Jefferson County Planning Department.

751 Wheeler, W.A. 2007. Personal correspondence with Tami Pokorny, Jefferson County Department of Natural

Resources.752 Whetton, J.T., P.I. Carroll, H.D. Grower, E.H. Brown, and F. Pessl Jr. 1988. Bedrock geological map of the Port

Townsend 30- by 60-minute quadrangle, Puget Sound region, Washington. U.S. Geological Survey

Miscellaneous Investigations Map I-1198-G, scale 1:100,000.753 Why Aquaculture?. Pcific Aquaculture Caucus.

754 Wigington, P.J., Jr., J.L. Ebersole, M.E. Colvin, S.G. Leibowitz, B. Miller, B. Hansen, H. Lavigne5, D. White, J.P.

Baker, M.R. Church, J.R. Brooks, M.A. Cairns, and J.E. Compton. 2006. Coho Salmon Dependence on

Intermittent Streams. Research Communication submission to Frontiers in Ecology and Environment. July 5,

2006.755

Wild Fish Conservancy. 2008. Little Quilcene-Leland Watershed: Rapid Habitat Assessment and Prioritized

Restoration Framework, Technical Report. Prepared for Pacific Ecological Institute. September 2008. 119 p.

756 Williams, G. D. and R.M., Thom. 2001. Marine and Estuarine Shoreline Modification Issues. Submitted to

Washington Department of Fish and Wildlife, Washington Department of Ecology, and the Washington

Department of Transportation. April 2001. Battelle Marine Sciences Laboratory Pacific Northwest National

Laboratory757 Williams, G. D. and Ronald M. Thom. White Paper: Marine and Estuarine Shoreline Modification Issues.

(Sequim, WA: Battelle Marine Sciences Laboratory, Pacific Northwest National Laboratory, April 17, 2001).

758 Williams, G. D. and Ronald M. Thom. Marine and Nearshore Modification Issues. (Sequim, WA: Battelle

Marine Sciences Laboratory, Pacific Northwest National Laboratory, April 17, 2001). White Paper submitted

to Washington State Department of Fish and Wildlife, Department of Ecology, and Washington Department

of Transportation.759 Williams, G.D., and R.M. Thom. 2001. Development of Guidelines for Aquatic Habitat Protection and

Restoration: Marine and Estuarine Shoreline Modification Issues. PNWD-3087. Prepared for the Washington

State Department of Transportation, Washington Department of Fish and Wildlife, and the Washington

Department of Ecology, by Battelle Marine Sciences Laboratory, Sequim, Washington.

760 Williams, G.D., R.M. Thom, and N.R. Evans. 2004. Bainbridge Island Nearshore Habitat Characterization and

Assessment, Management Strategy Prioritization, and Monitoring Recommendations. Prepared for City of

Bainbridge Island. November 2004.761 Willson, Mary F., Karl C. Halupka. 1995. Anadromous Fish as Keystone Species in Vertebrate Communities.

Conservation Biology , Vol. 9, No. 3 (Jun., 1995), pp. 489-497. 007A762 Winter, T.C. 1988. A conceptual framework for assessing cumulative impacts on the hydrology of nontidal

wetlands. Environmental Management 12(5):605-620.763 Woodruff, D., A. Borde, G. Williams, J. Southard, R. Thom, C. Simenstad, R. Garono, R. Robinson, and J.

Norris. 2002. Mapping of subtidal and intertidal habitat resources: Hood Canal Floating Bridge, Washington.

Prepared for the Washington State Transportation Commission.764 WRIA 16 Planning Unit. 2006. Watershed Management Plan, Skokomish-Dosewallips Water Resource

Inventory Area (WRIA 16), Including the WRIA 14 South Shore Sub-basin. February 2006.

42 of 43

12-9-2013



765 Young, N. and R. Matthews. 2010. The Aquaculture Controversy in Canada: Activism, Policy, and Contested

Science. 60 pp.766 Young, R.A., T. Huntrods and W. Anderson. 1980. Effectiveness of Vegetated Buffer Strips in “Controlling

Pollution from Feedlot Runoff. J. Environ. Qual. 9(3):483-487.767 Zelo, I. and H. Shipman, 2000. Alternative Bank Protection Methods for Puget Sound Shorelines, prepared

for the Shorelands and Environmental Assistance Program, Washington Department of Ecology, Olympia,

Washington, Publication #00-06-012.768 Ziemer, R.R. and D.N. Swanston. 1977. Root strength changes after logging in southeast Alaska. U.S. Dep.

Agric. For. Serv. Res. Note PNW-306. Portland, OR, USA.769 Zimbardo, P.G. 1970. "The human choice: Individuation, reason and order versus deindividuation, impulse

and chaos. in W.J. Arnold and D. Levine (eds.) Nebraska Symposium on Motivation . 1969. Univ. of Nebraska

Press, Lincoln, Nebraska.770 Zimbardo, P.G. et al. 1982. "The psychology of imprisonment" in J.C. Brigham and L.S. Wrightsman (eds.)

Contemporary Issues in Social Psychology Brooks/Cole Publ. Co. Monterey CA 395 p.

43 of 43

12-9-2013

jefferson county smp updatejefferson county smp update exhibit b. bibliography of scientific and...

Documents