jacq ws intro-20150918
TRANSCRIPT
JACQ / 2015-09-18
WS Caryophyllales Conf
Historical Aspects of Vienna Herbaria Beck von Managetta 1888/1889
• Foundation1807 botanical collections are art of the “Hofnaturalienkabinett” (600 species)1810 2 rooms in Museumbuilding in Vienna, Josephsplatz 1 Herbarium (500 fascicles) and wax models / Trattinnick1836 Brazilian Museum incorported in general collection
System: separate herbaria no systematic arrangement
1844-1845 transfer of collections to Museumbuilding of University(60.000 “Species”) / Endlicher sub Dir. von SchreibersSystem: Endlicher / Generalherbarium
1849-1879 remarkable acquisitions exchange, gifts and purchase / Fenzl
• Ringstraße --> 18891884 transfer of collections originating from the “k.k. Hofcabinets” to new Museum of
Natural History (3.600 fascicles)Foundation of a second herbarium at the University of Vienna
1889 4.500 fascicles / Beck von ManagettaSystem: Bentham & Hooker
ff. 2 separate HerbariaHerbarium W 4 mio “Phanerogams” / 1,5 mio “Cryptogams”System: Brummit & Powell - alphabetic
Herbarium WU 1 mio “Phanerogams” / 400 k “Cryptogams” System: Dalla Torre & Harms - systematic
Herbarium QCNE, Quito, Ecuador
Botucatu 2013-08-20
Arbeiten in Herbarien
Herbarium QCNE – Herbario Nacional de Ecuador, Quito
work in Herbarium
Botucatu 2013-08-20Neill et al. 6160 – Rollinia Maas et al. 1997: Rollinia chrysocarpa Annona chrysocarpa
modern specimens
Scope & Coverage Local / Regional / National / International --> multiple institutions
Modules Botanical --> Specimens&Observations, incl. Nomenclature, Taxonomy, ChorologyBibliographic --> native Literature References, incl. links to external sources
HandlingData Input manual, incl. import via standardized import format (CSV files)GUI unilingual - Content multilingual
ImagingTIF or JPG files linked to records via naming conventions --> simple workflowLicensing Information embedded
Outline
Workflow Diagram
specimen names taxonomic backbone
monographsrevisions
florasarticle-level
protologuesgeographic reference
actor / person / team institution / collection
type
external references (IPNI, IF, TPL, Tropicos, Fbras; HUH; geonames; BHL / DOIs)(G)UID
det. classifications
Datamodel simplified
MS Access
• local installation
• standalone• non public
LAMP
• Custom PHP4/5 Code
• MySQL 4.5
Unicode
Yii/Yii2
• PHP Framework for Rapid Application Development
JavaEE
• Service Oriented Architecture
• JavaEE Standards (Framework Independent)
System – SW & HW & Digital Images
EUROGARD VII, Paris, 2015-07-06
pre 2000 2004 2009 2012 2014 2015 ff.
PC Physical Server
DevelopInput
AccessWeb
Virtual Infrastructur
e
local File-System Images Server Instances
Archivalnon Archival
System – Topology
2000WU
2004 2005 2008W GZU / GJO (+) HAL / JE / HerbDrogMus / HerbPilsl
2009 2011TGU MJG / KUFS
2012/BRNU / KFTA / LAGU / LW / LWKS / LWS / LZ / Univ. Tunceli Turkey
2013 2014BAK / CHER / GAT / HERZ / LECB / OLD / PRC B / ERE / NS / NSK
2015FT / TBI / TMRC / UBT
Czech Museums , University Krakow
Institutions
Content / 20150908
Specimens 626.750 / 197.956 images onlineTypes 133.653 / typisified Names 74.175 (Genera, Speceis and below)
Scientific Names 334.838 / Genera 36.213 / Families 3.421
nomenclatoral Authors & Authorteams 98.598
Collectors and Collectorteams 24.207 / 9.913
Literature Citations 29.729
Synonyms 217.255 (= links from one Taxon Name to another)
Classifications 111.560 Parental-Child-Relations based on 2.446 Lit Citations
Content
Classifications & FlorasDalla Torre & Harms – families and higher – finished
for special groups infrafamiliar–classifications availableAnnonaceae, Ebenaceae, Myristicaceae , Poaceae
Cronquist 1981 – finished
Exkursionsflora von Österreich Ed. 3 (2008) – finishedEd. 1 & 2 families and higher finished
Flora Iranica – all accepted taxa – finished Flora Armenia & Afghanistan – in progress
APG + recent systems from Phytotaxa 2011 – finished Lycopodiophyta & Ferns & gymnosperms – Phytotaxa 2011 – finishedSoreng et al 2015 – Gramineae – finishedFunk et al. 2007 – Compositae – in processAnnonaceae – showcase – familiy finished – infrafamilien Bearbeitungen work in progressEbenaceae, Myristicaceae – work in progress Amaranthaceae, Chenopodiaceae, Portulacaceae (et al.) – work in progress
http://jacq-dev.botanik.univie.ac.at/jacq-code/index.php?r=dataBrowser/classificationBrowser/index
GUI
GUI
Botucatu 2013-08-20
Digital imaging
Virtual Herbaria
Virtual Herbaria
JACQ Input – productive Systemhttps://input.jacq.org/herbarium/JACQ Output – publichttp://herbarium.univie.ac.at/database/search.php
JACQ Development – testing areahttp://jacq-dev.botanik.univie.ac.at/jacq-legacy/input/login.phptest_input / inputtest_editor / edit
JACQ Development Outputhttp://jacq-dev.botanik.univie.ac.at/jacq-legacy/output/search.php
URLs & Login
Botucatu 2013-08-20