introduction to crossref text and data mining webinar
TRANSCRIPT
Crossref for Text & Data Mining
Rachael Lammey
Product Manager, CrossRef
December 2015
Not-for-profit association of scholarly publishers
All subjects, all business models
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About Crossref
10.1098/rstl.1665.0001
User clicks on Crossref DOI reference link in
Journal A
Tani, N., N. Tomaru, M. Araki, AND K. Ohba. 1996. Genetic diversity and differentiation in populations of Japanese stone pine (Pinus pumila) in Japan.
Canadian Journal of Forest Research 26: 1454–1462.[CrossRef]
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Crossref Services
• Cross-publisher reference linking
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• Cross-publisher plagiarism screening
• Cross-publisher update identification
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• Cross-publisher text and data mining
Using Crossref for text mining
What is text and data mining? Text Mining is an interdisciplinary field combining techniques from linguistics, computer science and statistics to build tools that can efficiently retrieve and extract information from digital text.
http://blogs.plos.org/everyone/2013/04/17/announcing-the-plos-text-mining-collection/
It uses powerful computers to find links between drugs and side effects, or genes and diseases, that are hidden within the vast scientific literature. These are discoveries that a person scouring through papers one by one may never notice.
http://www.theguardian.com/science/2012/may/23/text-mining-research-tool-forbidden
http://www.jisc.ac.uk/media/documents/publications/textminingbp_rtf.rtf
Marc Weeber and colleagues used automated text mining tools to infer that the drug thalidomide could treat several diseases it had not been associated with before. Thalidomide was taken off the market 40 years ago, but is still the subject of research because it seems to benefit leprosy patients via their immune systems. Weeber and Grietje Molema, an immunologist, used text mining tools to search the literature for papers on thalidomide and then pick out those containing concepts related to immunology. One concept, concerning thalidomide’s ability to inhibit Interleukin-12 (IL-12), a chemical involved in the launch of an immune response, struck Molema as particularly interesting. A second automated search for diseases that improve when the action of IL-12 is blocked, revealed several not previously linked with thalidomide, including chronic hepatitis, myasthenia gravis and a type of gastritis.
“Type in thalidomide and you get 2-3000 hits. Type in disease and you get 40,000 hits. With automated text mining tools we only had to read 100-200 abstracts and 20 or 30 full papers. We’ve created hypotheses for others to follow up” says Weeber.Weeber et al. J Am Med Inform Assoc. 2003 10 252-259
http://www.forbes.com/sites/stevensalzberg/2014/03/23/why-google-flu-is-a-failure/
Why?
• Researchers find it impractical to negotiate multiple bilateral agreements with hundreds of subscription-based publishers in order to authorize TDM of subscribed content.
• Subscription-based publishers find it impractical to negotiate multiple bilateral agreements with thousands of researchers and institutions in order to authorize TDM of subscribed content.
• All parties would benefit from support of standard APIs and data representations in order to enable TDM across both open access and subscription-based publishers.
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Publishing House * European Optical Society * European Paediatric Association * European Peptide Society * European Photochemistry Association * European Physical Society * European Research Press
* European Respiratory Society (Ers) * European Society For Photobiology * European Society Of Endocrinology * European
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* Faculty Of Physical Education And Sport, University Of Banja Luka * Faculty Of Transport And Traffic Sciences * Fapunifesp
(Scielo) * Faseb * Fb Communication * Fecap Fundacao Escola De Comercio Alvares * Federation Of American Societies For
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Instituto De Ensino E Pesquisa * Institute Of Mathematics, Usc Ras * Institut D'educacio Fisica De Catalunya (Inefc) * Institut Des
Hautes Etudes Scientifiques * Institut Fuer Internationale Architektur Dokumentation * Institut Fur Weltwirtschaft * Institut
Za Lokalno Samoupravo In Javna Narocila Maribor * Institut Za Migracije I Narodnosti (Institute For Migration And Ethnic Studies)
* Institute For Computer Sciences, Social Informatics And Telecommunications Engineering (Icst) * Institute For Condensed Matter Physics * Institute For Information Policy * Institute For
Operations Research And The Management Sciences (Informs) * Institute For Policy Studies And Social Innovation, University Of
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Research (Instaar), University Of Colorado * Institute Of Chemistry Of Ireland * Institute Of Continuous Media Mechanics * Institute Of Control, Robotics And Systems * Institute Of Earth's Crust, Siberian Branch Of The Russian Academy Of Sciences *
Institute Of Electrical & Electronics Engineers (Ieee) * Institute Of Electrical Engineers Of Japan (Iee Japan) * Institute Of Electronic
And Information Technology (Ieit) * Institute Of Electronics, Information And Communications Engineers (Ieice) * Institute Of Embedded Engineering Of Korea * Institute Of Food Technology *
Institute Of Forest Science, Kangwon National University * Institute Of Geographic Science And Natural Resources Research,
Chinese Academy Of Sciences * Institute Of Geography And Spatial Organization, Polish Academy Of Sciences * Institute Of
Hematology, Catholic University Press * Institute Of Human Culture Studies, Otsuma Womens University * Institute Of Image
Information And Television Engineers * Institute Of Industrial Applications Engineers * Institute Of Informatics Problems * Institute Of Information Science, Izum * Institute Of Korean Electrical And Electronics Engineers * Institute Of Life Cycle Assessment, Japan * Institute Of Malacology * Institute Of
Mathematical Statistics * Institute Of Mathematics, Polish Academy Of Sciences * Institute Of Measurement And Control * Institute Of Molecular Biology And Genetics (Nas Ukraine) * Institute Of Noise
Control Engineering (Ince) * Institute Of Oceanology, Polish Academy Of Sciences * Institute Of Organic Chemistry &
Biochemistry * Institute Of Organic Chemistry And Biochemistry, Academy Of Sciences Of The Czech Republic * Institute Of Palestine Studies * Institute Of Physical Optics * Institute Of
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Research Institute * Institute Of Plasma Physics - Chinese Academy Of Sciences * Institute Of Postgraduate Studies, Syiah Kuala University * Institute Of Public Administration And Politics -
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Institute Of Rock Structure And Mechanics, As Cr * Institute Of Slavic Studies Polish Academy Of Sciences * Institute Of Social Sciences Ivo Pilar * Institute Of Sociology Of The Academy Of Sciences Of The Czech Republic * Institute Of Southeast Asian
Studies * Institute Of Statistical Science * Institute Of Systematics And Evolution Of Animals, Polish Academy Of Sciences * Institute
Of Systems Biology * Institute Of West Asian Studies (Ikrab) * Institution Of Chemical Engineers (Icheme) * Institution Of
Engineering And Technology (Iet) * Institutional Investor Journals * Instituto Agronomico De Pernambuco * Instituto Brasiliense De Direito Publico * Instituto De Economia Aplicada A La Empresa
(Ieae) * Instituto De Estudios Auriseculares * Instituto De Geociencias - Ufrj * Instituto De Investigaciones Oceanologicas *
Instituto De Oceanografia - Furg * Instituto De Pesquisas Ambientais Em Bacias Hidrograficas (Ipabhi) * Instituto De Salud Carlos Iii/Bncs/Scielo Espana * Instituto Estudios Bursatiles (Ieb) * Instituto Estudios Fiscales * Instituto Evandro Chagas * Instituto
Imani * Instituto Juan De Herrera * Instituto Nacional De Investigacion Y Tecnologia Agraria Y Alimentaria (Inia) * Instituto
Nacional De Salud * Instituto Para O Desenvolvimento Da Educacao * Instituto Politecnico Nacional/Centro De Investigacion
En Computacion * Instituto Superior De Psicologia Aplicada * Instituto Tecnologico Autonomo De Mexico * Instytut
Dermatologii Radoslaw Spiewak * Intech * Integrated Ocean Drilling Program (Iodp) * Integrated Ocean Drilling Program-
Management International * Integrated Publishing Association * Intellect * Intellectual Property Association Of Japan * Inter-Research Science Center * Inter-University Consortium For
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International Association For Bridge And Structural Engineering (Iabse) * International Association For Computerized Adaptive
Testing * International Association For Energy Economics (Iaee) * International Association For Engineering Geology & The Environment For Pediatric Intensive Care * International
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Sciences (Iahs) * International Association Of Insolvency Professionals * International Association Of Lowland Technology *
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Atomic Energy Agency * International Bee Research Association * International Bone & Mineral Society * International Bone And
Mineral Society * International Centre For Applied Thermodynamics (Icat) * International Centre For Diffraction Data
(Icdd) * International Centre For Sustainable Development Of Water * International Centre For Trade And Sustainable
Development (Ictsd) * International Centre Of Insect Physiology And Ecology (Icipe) * International College Of Surgeons * International Commission Of Irrigation And Drainage *
International Community Of Spatial Planning And Sustainable Development * International Computer Science Company *
International Consortium Of Landslides * International Council For Traditional Music * International Deep Drawing Research Group * International Dental Research * International Digital Organization For Scientific Information (Idosi) * International Dose-Response Society * International Ecostations * International Engineering
Journal * International Federation Of Automatic Control * International Federation Of Infection Control * International Food
Policy Research Institute (Ifpri) * International Free And Open Source Software Law Review * International Glaciological Society *
International Health Academy * International Heart Journal (Japanese Heart Journal) * International Heart Journal Association *
International Institute For Environment And Development * International Institute For Science, Technology And Education *
International Journal Of Alcohol And Drug Research * International Journal Of Biosciences * International Journal Of Cancer Therapy
And Oncology * International Journal Of Digital Accounting Research * International Journal Of Eye Banking * International
Journal Of Land Systems * International Journal Of Medical Education * International Journal Of Occupational Medicine And
Environmental Health (Ijomeh) * International Journal Of Optimization And Control: Theories And Applications *
International Journal Of Particle Therapy * International Journal Of Pharmaceutical Sciences And Research * International Journal Of
Psychoanalysis, London * International Journal Of Research In Ayurveda And Pharmacy (Ijrap) * International Journal Of Soft
Computing And Software Engineering * International Journal Of Students' Research * International Language, Literature And
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And United Nations University * International Mycological Association * International Mycological Association (Ima) * International Oil Spill Conference * International Pediatric
Nephrology Association * International Pediatric Research * International Phototherapy Association * International Phycological Society * International Potato Center (Cip) * International Press Of Boston * International Reading Association * International Research
And Cooperation Association For Bio & Socio-Sciences Advancement (Irca-Bssa) * International Research Journals *
International School For Advanced Studies (Sissa) * International Science And Engineering Society * International Scientific Literature
* International Skeletal Society * International Society For Analytical Cytology * International Society For Computational Biology * International Society For Environmental Information
Science (Iseis) * International Society For Gerontechnology (Isg) * International Society For Magnetic Resonance In Medicine *
International Society For Music Education * International Society For The History Of Rhetoric * International Society Of
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Cytology, Cytologia, Japan Mendel Society * International Society Of Endovascular Specialists * International Society Of Histology &
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And Gynaecology * International Union Against Cancer International Union Against Tuberculosis And Lung Disease * International Union Against Tuberculosis And Lung Disease *
International Union Of Crystallography (Iucr) * International Union Of Pure And Applied Chemistry (Iupac) * International University Line * International Water Management Institute (Iwmi) * Internet
Medical Publishing (Fundacion De Neurociencias) * Internet Scientific Publishers, Llc * Internet Search Environment Number
(Isen) * Interscience Place * Iop Publishing * Iosr Journals * Ip Publishing, Ltd. * Irish Journal Of French Studies * Iron And Steel
Institute Of Japan * Is, Guc (The Journal Of Industrial Relations And Human Resources) * Ischools * Ise Vera Cruz * Iseki Food
Association * Islamic Medical Association Of North America * Island Press * Ispacs Gmbh * Israel Chemical Society * Istituto Scientia * Istituto Superiore Di Sanita * Italian Federation Of
Cardiology * Italian Society Of Sivilculture And Forest Ecology (Sisef) * IUCN * IUSSI * Iuwa, Institut Fur
Umweltwirtschaftsanalysen * Ivanovo State University Of Chemistry And Technology * Ivyspring International Publisher * IWA Publishing * * J. Michael Ryan Publishing * James Nicholas Publishers * Janas * Janos Bolyai Mathematical Society * Japan
Academic Collaborations Medical Society * Japan Academy * Japan Academy Of Critical Care Nursing * Japan Academy Of Midwifery * Japan Academy Of Neurosonology * Japan Academy Of Nursing
Science * Japan Agency For Marine-Earth Science And Technology * Japan Antibiotics Research Association * Japan Association For African Studies * Japan Association For Comparative Economic
Studies * Japan Association For Comparative Politics * Japan Association For Earthquake Engineering * Japan Association For
Landscape Ecology * Japan Association For Quaternary Research * Japan Association For Real Estate Sciences * Japan Association For Urban Sociology * Japan Association For Wind Engineering * Japan Association Of Breast Cancer Screening * Japan Association Of
Food Preservation Scientists * Japan Association Of Gender Studies * Japan Association Of Ion Exchange * Japan Association Of
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Association On The Environmental Studies * Japan Atherosclerosis Society * Japan Audiological Society * Japan Broncho-
Esophagological Society * Japan Cement Association * Japan Chapter Of International Geosynthetics Society * Japan Chemical Journal Forum * Japan College Of Angiology * Japan Comparative Education Society * Japan Concrete Institute * Japan Endocrine
Society * Japan Epidemiological Association * Japan Epilepsy Society * Japan Ergonomics Society * Japan Ethological Society * Japan
Gastrointestinal Endoscopy Society * Japan Health Physics Society * Japan Institute Of Electronics Packaging * Japan Institute Of
Heterocyclic Chemistry * Japan Institute Of Light Metals * Japan Institute Of Metals * Japan Institute Of Navigation * Japan
International Research Center For Agricultural Sciences * Japan Kaatsu Training Society * Japan Kaatsu Training Society * Japan Landslide Society * Japan Laser Processing Society * Japan Legal
History Association * Japan Lung Cancer Society * Japan Management Training Center * Japan Medical Library Association * Japan Neurosurgical Society * Japan Oil Chemists' Society * Japan
Organization Of Clinical Dermatologists * Japan Pancreas Society * Japan Petroleum Institute * Japan Poultry Science Association *
Japan Prosthodontic Society * Japan Radiation Research Society * Japan Radioisotope Association * Japan Rhinologic Society * Japan
Science And Technology Agency (Jst) * Japan Science Support Foundation * Japan Section Of The Regional Science Association
International * Japan Society For Aeronautical And Space Sciences * Japan Society For Analytical Chemistry * Japan Society For
Bioscience, Biotechnology, And Agrochemistry * Japan Society For Cell Biology * Japan Society For Clinical Anesthesia * Japan Society
For Clinical Immunology * Japan Society For Comparative Endocrinology * Japan Society For Environmental Chemistry * Japan Society For Equilibrium Research * Japan Society For Fuzzy Theory And Intelligent Informatics * Japan Society For Graphic Science *
Japan Society For Head And Neck Cancer * Japan Society For Head And Neck Surgery * Japan Society For Higher Brain Dysfunction * Japan Society For Immunology Of Reproduction * Japan Society For Lactic Acid Bacteria * Japan Society For Laser Surgery And
Medicine * Japan Society For Molecular Science * Japan Society For Natural Disaster Science * Japan Society For Occupational Health *
Japan Society For Oral Tumors * Japan Society For Oriental Medicine * Japan Society For Precision Engineering * Japan Society For Research On Emotions * Japan Society For Snow Engineering * Japan Society For Southeast Asian Studies * Japan Society For The Philosophy Of Sport And Physical Education * Japan Society For
The Study Of Hypertension In Pregnancy * Japan Society Of Applied Electromagnetics And Mechanics * Japan Society Of
Applied Physics * Japan Society Of Civil Engineers * Japan Society Of Coloproctology * Japan Society Of Colour Material * Japan
Society Of Computer Aided Surgery * Japan Society Of Coordination Chemistry * Japan Society Of Corrosion Engineering * Japan Society Of Cosmetic Chemists Of Japan * Japan Society Of
Drug Delivery System * Japan Society Of Electrical Machining Engineers * Japan Society Of Engineering Geology * Japan Society
Of Equilibrium Research * Japan Society Of Equine Science * Japan Society Of Erosion Control Engineering * Japan Society Of Family Sociology * Japan Society Of Geoinformatics * Japan Society Of
Gymnastics For All * Japan Society Of Gynecologic And Obstetric Endoscopy And Minimally Invasive Therapy * Japan Society Of Health Evaluation And Promotion * Japan Society Of Health
Promotion And Physical Therapy * Japan Society Of Health Support Science * Japan Society Of Hepatology * Japan Society Of
Histochemistry & Cytochemistry * Japan Society Of Human Genetics * Japan Society Of Human Growth And Development * Japan Society Of Hydrology And Water Resources * Japan Society Of Immunology And Allergology In Otolaryngology * Japan Society
Of Information And Knowledge * Japan Society Of Kansei Engineering * Japan Society Of Lipid Nutrition * Japan Society Of
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Society Of Personality Psychology * Japan Society Of Phlebology * Japan Society Of Photogrammetry And Remote Sensing * Japan
Society Of Physical Education, Health, And Sport Sciences * Japan Society Of Physiological Anthropology * Japan Society Of Plasma Science And Nuclear Fusion Research * Japan Society Of Powder And Powder Metallurgy * Japan Society Of Sarcoidosis And Other Granulomatous Disorders * Japan Society Of Ski Sciences * Japan
Society Of Smooth Muscle Research * Japan Society Of Sport Anthropology * Japan Society Of Sport Sociology * Japan Society Of Sports Industry * Japan Society Of Spring Engineers * Japan Society
Of Stomato-Pharyngology * Japan Society Of Thermophysical Properties * Japan Society Of Transfusion Medicine And Cell
Therapy * Japan Society Of Tropical Ecology * Japan Society Of Ultrasonics In Medicine * Japan Society Of Veterinary Epidemiology * Japan Society Of Waste Management Experts * Japan Society On
Water Environment * Japan Sociological Society * Japan Stroke Society * Japan Surgical Association * Japan Technical Association
Of The Pulp And Paper Industry * Japan Veterinary Cancer Society * Japan Veterinary Medical Association * Japan Welding Society *
Japan Wood Preserving Association * Japan Wood Research Society * Japan Wood Society * Japanese Association For Acute Medicine * Japanese Association For Chest Surgery * Japanese
Association For Laboratory Animal Science * Japanese Association For Oral Biology * Japanese Association For Petroleum Engineers * Japanese Association For Rural Studies * Japanese Association For
Russian And East European Studies * Japanese Association For Sport Management * Japanese Association For The Integrated Study Of Dietary Habits * Japanese Association For The Study Of Pain *
Japanese Association Of Electoral Studies * Japanese Association Of Forensic Science And Technology * Japanese Association Of
Groundwater Hydrology * Japanese Association Of Hydrological Sciences * Japanese Association Of Indian And Buddhist Studies *
Japanese Association Of Inorganic Phosphorus Chemistry * Japanese Association Of Mycotoxicology * Japanese Association Of Occupational Therapists * Japanese Association Of Rehabilitation
Medicine * Japanese Association Of Rural Medicine * Japanese Association Of Sign Linguistics * Japanese Association Of Virology *
Japanese Association Of Water Resources And Environment * Japanese Breast Cancer Society * Japanese Circulation Society * Japanese College Of Surgeons * Japanese Coral Reef Society *
Japanese Economic Association * Japanese Educational Research Association * Japanese Electrophoresis Society * Japanese
Environmental Mutagen Society * Japanese Forestry Society * Japanese Group Dynamics Association * Japanese Heart Rhythm Society * Japanese Institute Of Landscape Architecture * Japanese Leprosy Association * Japanese Monkey Centre * Japanese Neural Network Society * Japanese Pharmacological Society * Japanese
Physical Therapy Association * Japanese Political Science Association * Japanese Research Association For Food Irradiation *
Japanese Society For Artificial Intelligence * Japanese Society of Anxiety Disorders * Japanese Society For Bacteriology * Japanese
Society For Biological Sciences In Space * Japanese Society For Complementary & Alternative Medicine * Japanese Society For
Dental Health * Japanese Society For Dental Materials And Devices * Japanese Society For Dialysis Therapy * Japanese Society For Engineering Education * Japanese Society For Extremophiles *
Japanese Society For Food Hygiene And Safety * Japanese Society For Food Science And Technology * Japanese Society For
Histocompatibility And Immunogenetics * Japanese Society For Horticultural Science * Japanese Society For Hygiene * Japanese Society For Information And Systems In Education * Japanese
Society For Laser Dentistry * Japanese Society For Lipid Nutrition * Japanese Society For Lymphoreticular Tissue Research * Japanese
Society For Magnetic Resonance In Medicine * Japanese Society For Mastication Science * Japanese Society For Medical And Biological
Engineering * Japanese Society For Medical Virtual Reality * Japanese Society For Palliative Medicine * Japanese Society For
Pediatric Endocrinology * Japanese Society For Pediatric Nephrology * Japanese Society For Pharmacoepidemiology *
Japanese Society For Physiological Psychology And Psychophysiology * Japanese Society For Plant Cell And Molecular Biology * Japanese Society For Root Research * Japanese Society
For Sensory Evaluation * Japanese Society For Surgical Metabolism And Nutrition * Japanese Society For Tea Science And Technology
* Japanese Society For The History Of Economic Thought * Japanese Society For The Study Of Xenobiotics * Japanese Society For Theatre Research, Comparative Theatre Section * Japanese Society For Thermal Medicine * Japanese Society For Virology *
Japanese Society For Zoo And Wildlife Medicine * Japanese Society Of Mammalian Ova Research * Japanese Society Of Agricultural
Informatics * apanese Society Of Agricultural, Biological And Environmental
Using the DOI as the basis for a common text and data mining API provides several benefits. For example, the DOI provides:
•An easy way to de-duplicate documents that may be found on several sites.•Persistent provenance information. •An easy way to document, share and compare corpora without having to exchange the actual documents•A mechanism to ensure the reproducibility of TDM results using the source documents.•A mechanism to track the impact of updates, corrections retractions and withdrawals on corpora.
Why use the DOI?
The TDM Workflow
Step 1: A researcher identifies the articles they are interested in:
The search engines they use bring back results from lots of different publishers. They can also use Crossref to search.
The searches they run bring back results showing publications from a range of publishers, in different locations and using different business models.
The challenge is to harvest all these articles in order to be able to mine them, without engaging in individual transactions with each publisher.
How to do that?
Each of those articles has a DOI, or digital object identifier. Each DOI is unique and identifies the paper. Researchers are familiar with DOIs and are used to working with them.
2. The researcher takes the DOIs that correspond to the articles they are interested in.
Search engines will allow them to download this as a list, the researcher does not need to go to each paper to extract the DOI from it:
10.5555/1234567810.5556/1234567910.1016/1234568010.8080/1234568110.1155/1234568210.1100/1234568310.5555/1234568410.1007/1234568510.1111/1234568610.2406/1234568710.3994/1234568810.5006/12345689
Click to download
3. The researcher gives this list to the Crossref REST API:
And that tells them
Where the full-text is located What they are allowed to do with it
What are they are allowed to do with it?
This is communicated by license information that publishers give to Crossref.
Some publishers ask researchers to agree to an additional license to be able to use their content for mining. Crossref TDM allows researchers to log in with their ORCID ID and can view and accept publisher licenses all in one place:
Again, this saves multiple transactions on the part of the researcher.
The publishers do not charge researchers for this, and Crossref does not charge researchers for the service.
4. The researcher uses that information to go directly to each publisher via Crossref. It is a central channel for them visit thousands of publishers via one request or transaction.
Where they will be identified in a number of ways: No identification (Open Access content)IP recognition/log in credentialsIP recognition/log in credentials + Crossref token (API key) from the TDM service
5. The full-text is then returned to the researcher, and they can use their tools to mine it
Researchers: Common API
DOI Content Negotiat ion
http://dx.doi.org/10.5555-12345678
(Accept: text/html)
http://dx.doi.org/10.5555-12345678
(Accept: application/bibjson+json)
Rate Limit ing (optional)
Crossref TDM HTTP HeadersCR-TDM-Rate-Limit: 1500
(the rate limit ceiling per window on requests)
CR-TDM-Rate-Limit-Remaining: 1387
(number of requests left for the current window)
CR-TDM-Rate-Limit-Reset: 1378072800
(the remaining time in UTC epoch seconds before the rate limit resets and a new window is started)
*this is a technique used by many APIs, including Twitter’s
Common API Summary• Content Negotiation (Required)• New Metadata (Required)
• Full text URIs• License URIs
• Rate Limiting Headers (optional)
New metadata
https://apps.crossref.org/docs/tdm/full-text-uris-technical-details/
1. Full-text links
https://apps.crossref.org/docs/tdm/license-uris-technical-details/
2. License information
Example: Hindawi<ai:program name="AccessIndicators"><ai:license_ref>http://creativecommons.org/licenses/by/3.0/</ai:license_ref></ai:program><doi_data><doi>10.1155/2014/969265</doi><timestamp>20140401090031</timestamp><resource>http://www.hindawi.com/journals/aaa/2014/969265/</resource><collection property="text-mining"><item><resource mime_type="application/pdf">http://downloads.hindawi.com/journals/aaa/2014/969265.pdf</resource></item><item><resource mime_type="application/xml">http://downloads.hindawi.com/journals/aaa/2014/969265.xml</resource></item>
Stop here if
• You are an open access publisher• You include TDM as a part of your
subscription license/T&Cs.
Click-through service (optional)
ResearcherView
PublisherView
Researcher queries DOI using CN + API token
Publisher verifies API token
If token verified AND access control allows,publisher returns full text
(frequency at publisher discretion)
Benefits
• Streamlines researcher access to distributed full text for TDM• Enables machine-to-machine, automated access for
recognized TDM (i.e. researchers won’t be locked out of publisher sites) • Enables article-level licensing info and easy mechanism
for supplemental T&Cs for text and data mining (publishers discussing model license via STM)
Implementation
PublishersThere are two additional metadata elements that publishers will need to deposit to support TDM via CrossRef. These are:
•Full Text URIs: One or more URIs that point to full text representations of the content identified by your CrossRef DOIs.•License URIs: One or more URIs pointing at licenses that govern how the full text content can be used.•A .csv upload option is available to populate backfiles
•OPTIONAL: Add publisher TDM terms and conditions to the click-through service
Researchers
• Modify TDM tools to make use of the API token• Modify TDM tools to look for <lic_ref> elements• Register with the click-through service and accept/decline
licenses (if applicable)
http://tdmsupport.crossref.org/
Publishers
Articles with full-text links and license information deposited: 15 million from over 200 DOI prefixes
Cost? Free to researchers and the publicNo cost for publishers for 2015
Register interest at: http://www.crossref.org/tdm/contact_form.html
Usable as is:
https://blogs.nd.edu/emorgan/
https://github.com/ropensci/rcrossref
