integrated simulation system for soft materials fmo helps

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http://www.j-octa.com/ Please visit our website for more information J-OCTA is multi-scale simulation software which covers a wide range of scales, from molecular simulation to continuum analysis. In addition to various solvers according to each scale, J-OCTA has molecular modeling tool, various parameter estimation functions, interface with external software, etc. J-OCTA supports cutting-edge material design and material development. 1nm 100nm 1μm Evaluation of static and dynamic properties of materials based on atomistic and molecular levels is possible. All-atom and Coarse-Grained models (United-Atom, Beads-Spring and DPD, etc.) are supported. J-OCTA also includes Coarse-Grained potential estimation function and reverse mapping technology. A high speed MD solver VSOP is included, in addition, interfaces with LAMMPS, GROMACS and HOOMD-blue are also available. Molecular Dynamics COGNAC / VSOP e adsorption energy can be calculated by rotating / translating organic molecules placed on the surface (slab) structure of inorganic materials in any direction using the first principle calculation software “SIESTA”. J-OCTA also includes the function to estimate potential parameters used in Molecular Dynamics simulation from the obtained energy curves. First-principles calculation SIESTA Using Dissipative Particle Dynamics with entanglement effect, Slip-link model, and Primitive Chain Network model, rheological properties of polymer melts and solutions are evaluated, considering effects of molecular weight distribution and branch structures. Prediction of relaxation modulus, storage / loss modulus, elongational viscosity, etc. is possible. Rheology simulation VSOP/ PASTA / NAPLES By using the mean field method like Self Consistent Field eory and Dissipative Particle Dynamics, phase separation and interfacial structures of materials, including molecules of various structures and block copolymers, are predicted. Estimation of interaction parameter (χ parameter) and converting phase separation structure into Finite Element mesh are possible. Phase separation simulation COGNAC/VSOP/SUSHI/MUFFIN Multiphase simulation MUFFIN From molecular to macroscopic material properties By using the phase separation structure obtained by the mean field method, etc., the Finite Element Analysis of the elastic material is possible. Mesh generation function is included. Evaluation of the relationship between the microstructure and material properties of composite materials is possible. In addition, interface with LS-DYNA for the nonlinear structure analysis is also available. JSOL CORPORATION Engineering Technology Division E-mail [email protected] URL https://www.jsol-cae.com/en/ Tosabori Daibiru Bldg. 2-2-4 Tosabori, Nishi-ku, Osaka 550-0001 +81(6)4803-5820 Phone : +81(6)6225-3517 Fax : OSAKA +81(3)5859-6020 Phone : +81(3)5859-6035 Fax : TOKYO Harumi Triton Square Tower Z 1-8-12 Harumi, Chuo-ku, Tokyo 104-6205 +81(52) 202-8181 Phone : +81(52) 202-8172 Fax : Marunouchi KS Bldg. 2-18-25 Marunouchi, Naka-ku, Nagoya 460-0002 NAGOYA FCEWS (FMO-based Chi parameter Evaluation Workflow System) developed by Rikkyo University has been bundled in J-OCTA. FCEWS is a new method to estimate the interaction parameter χ between segments that is necessary for the mean field method and for DPD. Users can perform χ estimation which uses FMO (Fragment Molecular Orbital) via J-OCTA interface directly. is method is effective for the molecules that interact with other molecules through quantum chemical interaction, such as electronic polarization or delocalization, and for the cases where the molecular force field parameters are not sufficiently accurate. FMO helps to estimate χ(Chi) parameter. It is in high demand to estimate and evaluate the behavior during large deformation of micro-structured composites which contain phase separation and filler, by performing simulations. Existing FEM (Finite Element Method) engine of J-OCTA, "MUFFIN-Elastica" is for elastic simulation and is specialized for the behavior during a small deformation. To extend its applicability to FEM simulation, J-OCTA has the interface for a multi-purpose nonlinear structural analysis engine "LS-DYNA". e phase-separated structure computed by "COGNAC or "SUSHI" can be output as a mesh data for LS-DYNA simulation. After the user specifies the material properties for each component and deformation (boundary) condition, LS-DYNA simulation can be started from J-OCTA directly. As a material model being appropriate for nonlinear structural simulation, materials including elastoplastic, viscoelastic, and hyperplastic such as rubber are available for use. Interface for LS-DYNA supports large-deformation simulation J-OCTA supports SMILES (Simplified Molecular Input Line Entry System) format. J-OCTA reads molecular structures written in SMILES format and creates a 3D model. e obtained 3D model can be used to define and edit force field parameters for molecular dynamics application. Users can automate molecular dynamics calculation for a number of materials. Once the obtained material properties are compiled as a database, users can use it for machine learning and/or deep learning to evaluate Structure-Property Relationship (QSPR). Automatic MD calculation and QSPR using Deep Learning FCEWS (FMO-based Chi parameter Evaluation Workflow System) developed by Rikkyo University has been bundled in J-OCTA. FCEWS is a new method to estimate the interaction parameter χ between segments that is necessary for the mean field method and for DPD. Users can perform χ estimation which uses FMO (Fragment Molecular Orbital) via J-OCTA interface directly. is method is effective for the molecules that interact with other molecules through quantum chemical interaction, such as electronic polarization or delocalization, and for the cases where the molecular force field parameters are not sufficiently accurate. FMO helps to estimate χ(Chi) parameter. It is in high demand to estimate and evaluate the behavior during large deformation of micro-structured composites which contain phase separation and filler, by performing simulations. Existing FEM (Finite Element Method) engine of J-OCTA, "MUFFIN-Elastica" is for elastic simulation and is specialized for the behavior during a small deformation. To extend its applicability to FEM simulation, J-OCTA has the interface for a multi-purpose nonlinear structural analysis engine "LS-DYNA". e phase-separated structure computed by "COGNAC or "SUSHI" can be output as a mesh data for LS-DYNA simulation. After the user specifies the material properties for each component and deformation (boundary) condition, LS-DYNA simulation can be started from J-OCTA directly. As a material model being appropriate for nonlinear structural simulation, materials including elastoplastic, viscoelastic, and hyperplastic such as rubber are available for use. Interface for LS-DYNA supports large-deformation simulation J-OCTA supports SMILES (Simplified Molecular Input Line Entry System) format. J-OCTA reads molecular structures written in SMILES format and creates a 3D model. e obtained 3D model can be used to define and edit force field parameters for molecular dynamics application. Users can automate molecular dynamics calculation for a number of materials. Once the obtained material properties are compiled as a database, users can use it for machine learning and/or deep learning to evaluate Structure-Property Relationship (QSPR). Automatic MD calculation and QSPR using Deep Learning χ parameter 300 5.5 6 6.5 7 310 320 330 340 350 temperature[K] structural analysis Phase separated structure C60 Buckminster-fullerene A comparison of two deep learning methods in solubility estimation. (Measured value and estimated value) Integrated Simulation System for Soft Materials SMILES 3D model Voxel Mesh Nonlinear

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h t t p://w w w. j - o c t a .c o m/

P l e a s e v i s i t o u r w e b s i t e f o r m o r e i n f o r m a t i o n

J-OCTA is multi-scale simulation softwarewhich covers a wide range of scales,

from molecular simulation to continuum analysis.In addition to various solvers according to each scale,J-OCTA has molecular modeling tool,various parameter estimation functions,interface with external software, etc.J-OCTA supports cutting-edge material designand material development.

1nm

100nm

1μm

Evaluation of static and dynamic properties of materials based on atomistic and molecular levels is possible. All-atom and Coarse-Grained models (United-Atom, Beads-Spring and DPD, etc.) are supported. J-OCTA also includes Coarse-Grained potential estimation function and reverse mapping technology. A high speed MD solver VSOP is included, in addition, interfaces with LAMMPS, GROMACS and HOOMD-blue are also available.

Molecular Dynamics COGNAC / VSOP

�e adsorption energy can be calculated by rotating / translating organicmolecules placed on the surface (slab) structure of inorganic materials in any direction using the �rst principle calculation software “SIESTA”. J-OCTAalso includes the function to estimate potential parameters used in Molecular Dynamics simulation from the obtained energy curves.

First-principles calculation SIESTA

Using Dissipative Particle Dynamics with entanglement e�ect, Slip-link model, and Primitive Chain Network model, rheological properties of polymer melts and solutions are evaluated, considering e�ects of molecular weight distribution and branch structures. Prediction of relaxation modulus, storage / loss modulus, elongational viscosity, etc. is possible.

Rheology simulation VSOP/ PASTA / NAPLES

By using the mean �eld method like Self Consistent Field �eory and Dissipative Particle Dynamics, phase separation and interfacial structures of materials, including molecules of various structures and block copolymers, are predicted. Estimation of interaction parameter (χ parameter) and converting phase separation structure into Finite Element mesh are possible.

Phase separation simulation COGNAC/VSOP/SUSHI/MUFFIN

Multiphase simulation MUFFIN

From molecular to macroscopic material properties

By using the phase separation structure obtained by the mean �eld method, etc., the Finite Element Analysis of the elastic material is possible. Mesh generation function is included. Evaluation of the relationship between the microstructure and material properties of composite materials is possible. In addition, interface with LS-DYNA for the nonlinear structure analysis is also available.

JSOL CORPORATION Engineering Technology Division

E-mail [email protected] URL https://www.jsol-cae.com/en/

Tosabori Daibiru Bldg. 2-2-4 Tosabori, Nishi-ku, Osaka 550-0001 +81(6) 4803-5820Phone : +81(6) 6225-3517Fax :O S A K A

+81(3) 5859-6020Phone : +81(3) 5859-6035Fax :T O K Y O Harumi Triton Square Tower Z 1-8-12 Harumi, Chuo-ku, Tokyo 104-6205+81(52) 202-8181Phone : +81(52) 202-8172Fax :Marunouchi KS Bldg. 2-18-25 Marunouchi, Naka-ku, Nagoya 460-0002NAGOYA

FCEWS (FMO-based Chi parameter Evaluation Work�ow System) developed by Rikkyo University has been bundled in J-OCTA.FCEWS is a new method to estimate the interaction parameter χ between segments that is necessary for the mean �eld method and for DPD. Users can perform χ estimation which uses FMO (Fragment Molecular Orbital) via J-OCTA interface directly.�is method is e�ective for the molecules that interact with othermolecules through quantum chemical interaction, such as electronic polarization or delocalization, and for the cases where the molecular force �eld parameters are not su�ciently accurate.

FMO helps to estimate χ(Chi) parameter.

It is in high demand to estimate and evaluate the behavior during large deformation of micro-structured composites which contain phase separation and �ller, by performing simulations.Exist ing FEM (F inite Element Method) engine of J-OCTA, "MUFFIN-Elastica" is for elastic simulation and is specialized for the behavior during a small deformation.To extend its applicability to FEM simulation, J-OCTA has the interface for a multi-purpose nonlinear structural analysis engine "LS-DYNA".�e phase-separated structure computed by "COGNAC or "SUSHI"can be output as a mesh data for LS-DYNA simulation. After the userspeci�es the material properties for each component and deformation(boundary) condition, LS-DYNA simulation can be started fromJ-OCTA directly. As a material model being appropriate for nonlinearstructural simulation, materials including elastoplastic, viscoelastic,and hyperplastic such as rubber are available for use.

Interface for LS-DYNA supports large-deformation simulation

J-OCTA supports SMILES (Simpli�ed Molecular Input Line EntrySystem) format.J-OCTA reads molecular structures written in SMILES format andcreates a 3D model. �e obtained 3D model can be used to de�ne andedit force �eld parameters for molecular dynamics application. Userscan automate molecular dynamics calculation for a number of materials. Once the obtained material properties are compiled as a database, userscan use it for machine learning and/or deep learning to evaluateStructure-Property Relationship (QSPR).

Automatic MD calculation and QSPR using Deep Learning

χ parameter

3005.5

6

6.5

7

310 320 330 340 350temperature[K]

structural analysis

Phase separated structure

C60 Buckminster-fullerene

A comparison of two deep learning methods in solubilityestimation. (Measured value and estimated value)

FCEWS (FMO-based Chi parameter Evaluation Work�ow System) developed by Rikkyo University has been bundled in J-OCTA.FCEWS is a new method to estimate the interaction parameter χ between segments that is necessary for the mean �eld method and for DPD. Users can perform χ estimation which uses FMO (Fragment Molecular Orbital) via J-OCTA interface directly.�is method is e�ective for the molecules that interact with othermolecules through quantum chemical interaction, such as electronic polarization or delocalization, and for the cases where the molecular force �eld parameters are not su�ciently accurate.

FMO helps to estimate χ(Chi) parameter.

It is in high demand to estimate and evaluate the behavior during large deformation of micro-structured composites which contain phase separation and �ller, by performing simulations.Exist ing FEM (F inite Element Method) engine of J-OCTA, "MUFFIN-Elastica" is for elastic simulation and is specialized for the behavior during a small deformation.To extend its applicability to FEM simulation, J-OCTA has the interface for a multi-purpose nonlinear structural analysis engine "LS-DYNA".�e phase-separated structure computed by "COGNAC or "SUSHI"can be output as a mesh data for LS-DYNA simulation. After the userspeci�es the material properties for each component and deformation(boundary) condition, LS-DYNA simulation can be started fromJ-OCTA directly. As a material model being appropriate for nonlinearstructural simulation, materials including elastoplastic, viscoelastic,and hyperplastic such as rubber are available for use.

Interface for LS-DYNA supports large-deformation simulation

J-OCTA supports SMILES (Simpli�ed Molecular Input Line EntrySystem) format.J-OCTA reads molecular structures written in SMILES format andcreates a 3D model. �e obtained 3D model can be used to de�ne andedit force �eld parameters for molecular dynamics application. Userscan automate molecular dynamics calculation for a number of materials. Once the obtained material properties are compiled as a database, userscan use it for machine learning and/or deep learning to evaluateStructure-Property Relationship (QSPR).

Automatic MD calculation and QSPR using Deep Learning

χ parameter

3005.5

6

6.5

7

310 320 330 340 350temperature[K]

structural analysis

Phase separated structure

C60 Buckminster-fullerene

A comparison of two deep learning methods in solubilityestimation. (Measured value and estimated value)

Integrated Simulation System for Soft Materials

SMILES 3D model

VoxelMesh

Nonlinear