integrated biodiversity database on freshwater …...freshwater organisms is the symbolic...
TRANSCRIPT
![Page 1: Integrated biodiversity database on freshwater …...Freshwater organisms is the symbolic biodiversity in Monsoon Asia. However, the information has been quite limited. Using AP-BON](https://reader035.vdocuments.us/reader035/viewer/2022063008/5fbdc4769f7c1c400202fefc/html5/thumbnails/1.jpg)
Integrated biodiversity database on freshwater organisms of Monsoon Asia
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Monsoon Asia harbors many global biodiversity hotspots
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11000 mm
0 mm
Annual precipitation
Why does Monsoon Asia have so high biodiversity?
Monsoon climate brings adequate preparation to sustain high biodiversity.
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Freshwater organisms is the symbolic biodiversity in Monsoon Asia.However, the information has been quite limited.
Using AP-BON network, we have launched an integrated biodiversity database on freshwater organisms of Monsoon Asia
http://ffish.asia
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ffish.asia
Database on freshwater fishes of mainland Southeast
Asia
Database on gene/DNA
information of Japan
Kano’s original data about freshwater
organisms of Japan
FiMSEA
GEDIMAP
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Data distribution: Japan, Thailand, Lao PDR, Cambodia, Vietnam, Malaysia, Myanmar
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Structure of the database
Occurrence
Sampling
Taxonomy
DNAMedia file
Literature
6 tables
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Sampling
OccurrenceMedia file
Locality, date, environment, etc
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Occurrence
Sampling
Observation/specimen data(N. of individuals, specimen condition,
native/alien, etc)
Taxonomy
DNAMedia file
Literature
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Taxonomy
Scientific name, taxonomical information, standard name, local name, etc.
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DNA
DNA sequence, N, region, etc
Global Gene Bank
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Media file
sampling (environment).
Media file associated with
occurrence (observation/specimen), or
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Media file
moviesound
photo
CT/3D data
eDNA
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Literature
Scientific literature/paper information
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Occurrence
Sampling
Taxonomy
DNAMedia file
Literature
Structure of the database
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Features of the database
Filtering search by time and space
e.g. “Anabas”, central Cambodia, 2005-2010, summer (Jul-Aug-Sep)
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Various type of media file
Features of the database
Movie(YouTube embedded)
Environmental DNA(.fastq raw data)
Sound/Soundscape(SoundCloud embedded )
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Online browse-able CT/3D model
Various type of media fileFeatures of the database
(The holotype of Cobitis minamorii tokaiensis)
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Various type of media fileFeatures of the database
Specimen of extinct species (Misgurnus sp. [Jindai])
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Features of the database
Direct link from paper to dataset
Access a dataset directly from an peculiar URL in paper
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Features of the database
DNA blast system
Search DNA data by “Blast”
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Current status of the database
OccurrenceSampling
Taxonomy DNA
Media file Literature
7,521 49,360
2,215 6942
74,616 717
10,000
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Perspective of the database (2020~2025)
• More data on freshwater fishes of Myanmar
• More data on any fresh-brackish water organisms of Japan
• More CT scanned data; especially holotypes and extinct species