institute of food & health - university college dublin · mcmahon, j.a. (2011) the negotiations...

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Report of the President 2010/2011

Institute of Food & Health

Books

Professor Joseph Andrew McMahon

McMahon, J.A. (2011) The Negotiations for a New Agreement on Agriculture. Leiden,

Boston: Martinus Nijhoff Publishers.

Professor Da-Wen Sun

Da-Wen Sun (Editor) (2011) Handbook of Frozen Food Processing and Packaging, Second

Edition. Boca Raton, Florida, USA: CRC Press / Taylor & Francis, 880pp.

Da-Wen Sun (Editor) (2011) Handbook of Food Safety Engineering. Hoboken, New Jersey,

USA: Wiley-Blackwell, 840 pp.

Book Chapters

Professor Francis Butler

McCarthy, U., Ayalew, G., Butler, F., McDonnell, K. and Ward, S. (2011) 'Ultra High

Frequency (UHF) Radio Frequency Identification in Food Supply Chain Management

Applications' In: Regina M. Samson (eds). Supply-Chain Management: Theories,

Activities/Functions and Problems. NY: Nova Science Publishers.

Dr Enda Cummins

Tiwari, U. and Cummins, E. (2011) 'Functional and physicochemical properties of legume

fibers' In: Tiwari B, Gowen A and McKenna B (eds). Pulse Foods - Processing Quality and

Nutraceutical Applications. USA: Elsevier.

O'Brien, N. and Cummins, E. (2011) 'Nano-functionalized techniques in crop and livestock

production: Improving food productivity, traceability and safety' In: Frewer l, Norde W,

Fischer A and Kampers F (eds). Nantechnology in the agri-food sector: Implications for the

future. USA: Wiley.

Dr Kevin McDonnell





https://rms.ucd.ie/ufrs/[email protected]





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McMahon, J.A. (2010) 'Standards in the WTO - Attitudes to Biotechnology' In:

Globalisation and the Quest for Social and Environmental Justice. UK: Routledge.

Mr Mick O'Sullivan

O'Sullivan, M. (2011) 'Analytical methods: Proximate and other Analyses' In: Fuquay JW,

Fox PF and McSweeney PLH (eds). Encyclopaedia of Dairy Sciences, Second Edition,

Vol.1. San Diego: Elsevier.

O’Riordan, E.D., Duggan, E., O’Sullivan, M. and Noronha, N. (2011) 'Production of

analogue cheeses' In: A.Y. Tamime (eds). Processed Cheese and Analogues. Chichester,

UK: Wiley-Blackwell /Society of Dairy Technology.

Professor Colin Scott

Halliday, S., Scott, C. (2010) 'Administrative Justice' In: Peter Cane & Herbert Kritzer

(eds). Oxford Handbook of Empirical Legal Research. New York: Oxford University Press.

Scott, C. (2010) 'Regulatory Crime: History,Functions, Problems Solutions' In: Ursula

Kilkelly and Shane Kilcommins (eds). Regulatory Crime in Ireland. Dublin: First Law.

Scott, C. (2010) 'Reflexive Governance, Regulation and Meta-Regulation: Control or

Learning?' In: Olivier de Schutter & Jacques Lenoble (eds). Reflexive Governance:

Redefining the Public Interest in a Pluralistic World. Oxford: Hart Publishing.

Scott, C. (2010) 'Standard Setting in Regulatory Regimes' In: Robert Baldwin, Martin

Lodge and Martin Cave (eds). The Oxford Handbook of Regulation. Oxford: Oxford

University Press.


Lee, K.H. and Da-Wen Sun (2011) 'Plastic Packaging of Frozen Foods' In: Da-Wen Sun

(eds). Handbook of Frozen Food Processing and Packaging, 2nd Edition. Boca Raton,

Florida, USA: CRC Press / Taylor & Francis.

Jackman, P. and Da-Wen Sun (2011) 'Computer Vision for Measuring Shape, Size and

Colour in Foods' In: Y.-J. Cho (eds). Emerging Technologies for Food Quality and Food

Safety Evaluation. Boca Raton, Florida, USA: CRC Press / Taylor & Francis.

Norton, T. and Da-Wen Sun (2011) 'CFD: An Innovative and Effective Design Tool for the

Food Industry' In: J. M. Aguilera, G. V. Barbosa-Cánovas, R. Simpson and J. Welti-Chanes

(eds). Food Engineering at Interfaces. New York, USA: Springer.

Delgado, A.E. and Da-Wen Sun (2011) 'Food Refrigeration' In: Da-Wen Sun (eds).

Handbook of Food Safety Engineering. New Jersey, USA: Wiley-Blackwell.

Mendoza, F., Valous, N.A., Delgado A.E. and Da-Wen Sun (2011) 'Multifractal

Characterization of Apple Pore and Ham Fat-Connective Tissue Size Distributions using

Image Analysis' In: J. M. Aguilera, G. V. Barbosa-Cánovas, R. Simpson and J. Welti-

Chanes (eds). Food Engineering at Interfaces. New York, USA: Springer.

Delgado A.E. and Da-Wen Sun (2011) 'Ultrasound Accelerated Freezing' In: Da-Wen Sun

(eds). Handbook of Frozen Food Processing and Packaging, 2nd Edition. Boca Raton,

Florida, USA: CRC Press / Taylor & Francis.





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Wang, S. and Da-Wen Sun (2011) 'Antifreeze Protein and Ice Nucleating Protein' In: Da-

Wen Sun (eds). Handbook of Frozen Food Processing and Packaging, 2nd Edition. Boca

Raton, Florida, USA: CRC Press / Taylor & Francis.

Da-Wen Sun (2011) 'An Overview of Refrigeration Cycles' In: Da-Wen Sun (eds).

Handbook of Frozen Food Processing and Packaging, 2nd Edition. Boca Raton, Florida,

USA: CRC Press / Taylor & Francis.

Delgado, A.E. and Da-Wen Sun (2011) 'Ultrasound-Assisted Freezing' In: H. Feng, J.

Weiss and G. Barbosa-Cánovas (eds). Ultrasound Technologies for Food and

Bioprocessing. USA: Springer.

Professor Shane Ward





Dr Paul Whyte

O’Brien, S., Whyte, P., Iversen, C. and Fanning, S (2011) 'Sampling, transport and sample

preparation in emergency situations and rapid response' In: Hoorfar, J (eds). Rapid

Detection, Characterization, and Enumeration of Foodborne Pathogens. Washington:

ASM Press.

Whyte, P., Haughton, P., O’Brien, S., Fanning, S., O’Mahony, E. and Murphy, M. (2011)

'Pathogens in milk: Campylobacter spp' In: Fuquay J.W., Fox, P.F., McSweeney, P.L.H

(eds). Encyclopedia of Dairy Sciences. San Diego, USA: Academic Press.

Whyte, P., Fanning, S., O’Brien, S., O’Grady, L. and Solomon, K (2011) 'Tracing

pathogens in red meat and game production chains and at the abattoir' In: Brul, S.,

Fratamico, P.M., McMeekin, T.A (eds). Tracing Pathogens in the Food Chain. Cambridge:

Woodhead Publishing.

Books Edited

Dr Enda Cummins

Cummins, E. and Curran, T. (Ed.). (2011) Biosystems Engineering Research Review 16.

Dublin: UCD.

Professor Ronan Gormley

Gormley, T.R. and Brunton, N. (Ed.). (2010) Fruit, Health and the Consumer. Dublin: Teagasc.

Professor Helen Roche

Lanham-New, S.A., Macdonald, I.A. and Roche, H.M. (Ed.). (2011) Nutrition and Metabolism.

United Kingdom: John Wiley & Sons Ltd.








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Scott, C., Cafaggi. F. and Senden, L. (Ed.). (2011) Transnational Private Regulation:

Conceptual and Constitutional Debates. Oxford: Wiley-Blackwell.

Peer Reviewed Journals

Dr Tommy Boland

Navarro-Villa, A., O’Brien, M., López, S., Boland, T. and O’Kiely, P. (2011) 'In vitro

rumen methane output of red clover and perennial ryegrass assayed using the gas

production technique (GPT)'. Animal Feed Science and Technology, 168:152-164.

Foley, P.A., Crosson, P., Lovett, D.K., Boland, T.M., O’Mara, F.P. and Kenny, D.A.

(2011) 'Whole-farm systems modelling of greenhouse gas emissions from pastoral suckler

beef cow production systems'. Agriculture, Ecosystems and Environment, 14:222-230.

Purcell, P.J., O’Brien, M., Boland, T.M., O'Donovan, M. and O’Kiely, P. (2011) 'Impacts

of herbage mass and sward allowance of perennial ryegrass sampled throughout the

growing season on in vitro rumen methane production'. Animal Feed Science and

Technology, 166:405-411.

Deighton, M.H., O’Loughlin, B.M., Buckley F. and Boland, T.M. (2011) 'A simple

method for pre-calibration storage of sulphurhexafluoride permeation tubes. Animal Feed

Science and Technology'. Animal Feed Science and Technology, 166:198-200.

Navarro-Villa, A., O’Brien, M., López, S., Boland, T.M. and O’Kiely, P. (2011)

'Modifications of a gas production technique for assessing in vitro rumen methane

production from feedstuffs'. Animal Feed Science and Technology, 166:163-174.

Purcell, P.J., O’Brien, M., Boland, T.M. and O’Kiely, P. (2011) 'In vitro rumen methane

output of perennial ryegrass samples prepared by freeze drying or thermal drying (40°C)'.

Animal Feed Science and Technology, 166:175-182.

Crosson, P., Shalloob, L., O’Brien, D., Lanigan, G.J., Foley, P.A., Boland, T.M. and

Kenny, D.A. (2011) 'A review of whole farm systems models of greenhouse gas

emissions from beef and dairy cattle production systems'. Animal Feed Science and

Technology, 166:29-45.

O'Neill, B.F., Deighton, M.H., O'Loughlin, B.M., Mulligan, F.J., Boland, T.M.,

O'Donovan, M. and Lewis, E. (2011) 'Effects of a perennial ryegrass diet or total mixed

ration diet offered to spring-calving Holstein-Friesian dairy cows on methane emissions,

dry matter intake, and milk production'. Journal of Dairy Science, 94 (4):1941-1951.

Ryan, W., Hennessy, D., Murphy, J.J., Boland, T.M. and Shalloo, L. (2011) 'A model of

nitrogen efficiency in contrasting grass-based dairy systems'. Journal of Dairy Science, 94

(2):1032-1044.

Creighton, P., Kennedy, E., Shalloo, L., Boland, T.M. and O’Donovan, M. (2011) 'A

survey analysis of grassland dairy farming in Ireland, investigating grassland

management, utilisation , uptake of grassland research technologies and the frequency and

methods of sward renewal'. Grass and Forage Science, 66:251-264.

Murphy, D.P., O'Doherty, J.V., Boland, T.M., O'Shea, C.J., Callan, J.J., Pierce, K.M. and

Lynch, M.B. (2011) 'The effect of benzoic acid concentration on nitrogen metabolism,


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manure ammonia and odour emissions in finishing pigs'. Animal Feed Science and

Technology, 163 (2-4):194-199.

Wims, C.M., Deighton, M.H., Lewis, E., O'Loughlin, B., Delaby, L., Boland, T.M. and

O'Donovan, M. (2010) 'Effect of pre-grazing herbage mass on methane production, dry

matter intake, and milk production of grazing dairy cows during the mid-season period'.

Journal of Dairy Science, 93 (10):4976-4985.

Kelly, A.K., McGee, M., Crews, D.H., Sweeney, T., Boland, T.M. and Kenny, D.A.

(2010) 'Repeatability of feed efficiency, carcass ultrasound, feeding behavior, and blood

metabolic variables in finishing heifers divergently selected for residual feed intake'.

Journal of Animal Science, 88 (1010):3214-3225.

Dr Lorraine Brennan

Osorio, M.T., Moloney, A.P., Brennan, L. and Monahan, F.J. (2011) 'Authentication of

beef production systems using a metabolomics based approach'. Animal 59(7):3295-3305

Jin, Y., Amaral, A., McCann, A. and Brennan, L. (2011) 'Homocysteine levels impact

directly on epigenetic reprogramming in astrocytes'. Neurochemistry International 58(7):

833-838.

O'Sullivan, A., Gibney, M.J. and Brennan, L. (2011) 'Dietary intake patterns are reflected

in metabolomic profiles: potential role in dietary assessment studies'. Clinical Nutrition,

93 (2):314-321.

Rubio-Aliaga, I., de Roos, B., Sailer, M., McLoughlin G.A., Boekschoten, M.V., van Erk,

M., Bachmair, E.M., Van Schothorst, E.M., Keijer, J., Coort, S.L., Evelo, C., Gibney,

M.J., Daniel, H., Muller, M., Kleemann, R. and Brennan, L. (2011) 'Alterations in hepatic

one-carbon metabolism and related pathways following a high fat dietary intervention'.

Physiological Genomics, 43(8):408

O'Sullivan, A., Gibney, M.J., Connor, A.O., Mion, B., Kaluskar, S., Cashman, K.D.,

Flynn, A., Shanahan, F. and Brennan, L. (2011) 'Biochemical and metabolomic

phenotyping in the identification of a vitamin D responsive metabotype for markers of the

metabolic syndrome'. Molecular Nutrition and Food Research, 55(5):679-690.

Fan, Y., Murphy, T.B., Byrne, J., Brennan, L., Fitzpatrick, J. and Watson, R.W.G. (2011)

'Applying Random Forests to identify biomarker panels in serum 2D-DIGE data for the

detection and staging of prostate cancer'. Journal of Proteome Research, 10 (3):1361-

1373.

O'Sullivan, A., Balducci, D., Paradisi, F., Cashman, K.D., Gibney, M.J. and Brennan, L.

(2011) 'Effect of supplementation with vitamin D-3 on glucose production pathways in

human subjects'. Molecular Nutrition and Food Research, 55:1018-1025.

Nyamundanda, G., Brennan, L. and Gormley, I.C. (2010) 'Probabilistic principal

component analysis for metabolomic data'. BMC Bioinformatics, 11 (571).

Professor Francis Butler

Labite, H., Butler, F. and Cummins E. (2011) 'A Review and Evaluation of Plant



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Protection Product Ranking Tools Used in Agriculture'. Human and Ecological Risk

Assessment, 17 (2):300-327.

Ktenioudaki, A., Butler, F. and Gallagher, E. (2011) 'Dough characteristics of Irish wheat

varieties II. Aeration profile and baking quality'. Lwt-Food Science and Technology,

44:602-610.

Gonzales-Barron, U. and Butler, F. (2011) 'A comparison between the discrete Poisson-

gamma and Poisson-lognormal distributions to characterise microbial counts in foods'.

Food Control, 22:1279-1286.

Ktenioudaki, A., Butler, F. and Gallagher, E. (2011) 'Dough characteristics of Irish wheat

varieties I. Rheological properties and prediction of baking volume'. Lwt-Food Science

and Technology, 44:594-601.

Gonzales-Barron, U. and Butler, F. (2011) 'Characterisation of within-batch and between-

batch variability in microbial counts in foods using Poisson-gamma and Poisson-

lognormal regression models'. Food Control, 22:1268-1278.

Patras, A., Brunton, N.P., Tiwari, B.K. and Butler, F. (2011) 'Stability and Degradation

Kinetics of Bioactive Compounds and Colour in Strawberry Jam during Storage'. Food

and Bioprocess Technology, 4:1245-1252.

Barry, B., Barron, U.G., Butler, F., Ward, S. and McDonnell, K. (2011) 'Verification of

sheep identity by means of a retinal recognition system'. Transactions of the ASABE,

54:1161-1167.

Rossle, C., Gormley, T.R., Brunton, N. and Butler, F. (2011) 'Quality and Antioxidant

Properties of Fresh-cut Apple Wedges from 10 Cultivars During Modified Atmosphere

Packaging Storage'. Food Science and Technology International, 17:267-276.

Keenan, D.F., Brunton, N., Gormley, T.R. and Butler, F. (2011) 'Effects of Thermal and

High Hydrostatic Pressure Processing and Storage on the Content of Polyphenols and

Some Quality Attributes of Fruit Smoothies'. Journal of Agricultural and Food

Chemistry, 59:601-607.

Keenan, D.F., Brunton, N., Butler, F., Wouters, R. and Gormley, T.R. (2011) 'Evaluation

of thermal and high hydrostatic pressure processed apple purees enriched with prebiotic

inclusions'. Innovative Food Science and Emerging Technologies, 12:261-268.

Schvartzman, M.S., Maffre, A., Tenenhaus-Aziza, F., Sanaa, M., Butler, F. and Jordan, K.

(2011) 'Modelling the fate of Listeria monocytogenes during manufacture and ripening of

smeared cheese made with pasteurised or raw milk'. International Journal of Food

Microbiology, 145:31-38.

Rossle, C., Brunton, N., Gormley, T.R. and Butler, F. (2011) 'Quality and antioxidant

capacity of fresh-cut apple wedges enriched with honey by vacuum impregnation'.

International Journal of Food Science and Technology, 46:626-634.

Rossle, C., Brunton, N., Gormley, T.R., Wouters, R. and Butler, F. (2011) 'Alginate

Coating as Carrier of Oligofructose and Inulin and to Maintain the Quality of Fresh-Cut

Apples'. Journal of Food Science, 76:19-29.

Soumpasis, I. and Butler, F. (2011) 'Development of a Self-Regulated Dynamic Model for

the Propagation of Salmonella Typhimurium in Pig Farms'. Risk Analysis, 31:63-77.

Mc Carthy, U., Ayalew, G., Butler, F., McDonnell, K. and Ward, S. (2010) 'The Effect of

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increased Interrogation zone, Reader Antenna Polarisation and application factors in the

performance of UHF RFID tag detection on Modified Atmosphere Packaged Meat'.

Packaging Technology and Science, 23 (6):339-350.

Dr Enda Cummins

O'Brien, N. and Cummins, E. (2011) 'A Risk Assessment Framework for Assessing

Metallic Nanomaterials of Environmental Concern: Aquatic Exposure and Behavior'. Risk

Analysis, 31 (5):706-726.

Labite, H., Butler, F. and Cummins, E. (2011) 'A Review and Evaluation of Plant

Protection Product Ranking Tools Used in Agriculture'. Human and Ecological Risk

Assessment, 17 (2):300-327.

Tiwari, U., Cummins, E., Sullivan, P., O'Flaherty, J., Brunton, N. and Gallagher, E.

(2011) 'Probabilistic methodology for assessing the changes in the level and molecular

weight of barley beta glucan during bread baking'. Food Chemistry, 124 (4):1567-1576.

Chitlapilly, S., Cummins, E. and Abu-Ghannam, N. (2011) 'Prevalence and typing of

Listeria monocytogenes strains in retail vacuum packed cold-smoked salmon in the

Republic of Ireland'. Journal of Food Safety, 31 (1):21-27.

Tiwari, U. and Cummins, E. (2010) 'Sensitivity analysis in predictive models for assessing

the level of β-glucan in oats and barley cultivars using meta models'. Food and

Bioprocess Technology, 3 (6):935-945.

Coffey, R., Bergin, D. and Cummins, E. (2010) 'Use of meta-analysis to assess the effect

of conventional water treatment methods on the prevalence of Cryptosporidium spp. in

drinking water'. Human and Ecological Risk Assessment, 16 (6):1360-1378.

Professor Séamus Fanning

Bolton, D.J., Monaghan, A., Byrne, B., Fanning, S., Sweeney, T. and McDowell DA

(2011) 'Incidence and survival of non-O157 verocytotoxigenic Escherichia coli in soil'.

Journal of Applied Microbiology, 111:484-490.

Karczmarczyk, M., Martins, M., McCusker, M., Mattar, S., Amaral, L., Leonard, N.,

Aarestrup, F.M. and Fanning, S. (2010) 'Characterization of antimicrobial resistance in

Salmonella enterica food and animal isolates from Colombia: identification of a qnrB19-

mediated quinolone resistance marker in two novel serovars'. FEMS Microbiol Letters,

313:10-19.

Burns, K., Skally, M., Solomon, K., Scott, L., McDermott, S., O'Flanagan, D., Fanning,

S., Kyne, L., Fenelon, L. and Fitzpatrick, F. (2010) 'Clostridium difficile infection in the

Republic of Ireland: results of a 1-month national surveillance and ribotyping project,

March 2009'. Infection Control and Hospital Epidemiology, 31 (10):1085-1087.

Burns, K., Skally, M., Solomon, K., Scott, L., McDermott, S., O'Flanagan, D., Fanning,

S., Kyne, L., Fenelon, L. and Fitzpatrick F (2010) 'Clostridium difficile infection in the

Republic of Ireland: results of a 1-month national surveillance and ribotyping project,

March 2009'. Infection Control and Hospital Epidemiology: the Official Journal of the

Society of Hospital Epidemiologists of America, 31 (10):1085-1087.

Dr Eileen Gibney




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Mills, J.L., Carter, T.C., Scott, J.M., Troendle, J.F., Gibney, E.R., Shane, B. Kirke, P.N.,

Ueland, P.M., Brody, L.C. and Molloy, A.M. (2011) 'Do high blood folate concentrations

exacerbate metabolic abnormalities in people with low vitamin B-12 status?'. American

Journal of Clinical Nutrition, 94(2): 495-500.

Feeney, E., O'Brien, S., Scannell, A., Markey, A. and Gibney, E.R. (2010) 'Genetic

variation in taste perception: does it have a role in healthy eating?'. The Proceedings of the

Nutrition Society 70:1-9.

Professor Mike Gibney

O'Sullivan, A., Gibney, M.J. and Brennan, L. (2011) 'Dietary intake patterns are reflected

in metabolomic profiles: potential role in dietary assessment studies'. Clinical Nutrition,

93 (2):314-321.

Rubio-Aliaga, I., de Roos, B., Sailer, M., McLoughlin, G.A., Boekschoten, M.V., van

Erk, M., Bachmair, E.M., Van Schothorst, E.M., Keijer, J., Coort, S.L., Evelo, C., Gibney,

M.J., Daniel, H., Muller, M., Kleemann, R. and Brennan, L. (2011) 'Alterations in hepatic

one-carbon metabolism and related pathways following a high fat dietary intervention'.

Physiological Genomics, 43(8):408

O'Sullivan, A., Gibney, M.J., Connor, A.O., Mion, B., Kaluskar, S., Cashman, K.D.,

Flynn, A., Shanahan, F. and Brennan, L. (2011) 'Biochemical and metabolomic

phenotyping in the identification of a vitamin D responsive metabotype for markers of the

metabolic syndrome'. Molecular Nutrition and Food Research, 55(5):679-690.

Hall, B., Steiling, W., Stafford, B., Coroama, M., Tozer, S., Firmani, C., McNamara, C.

and Gibney, M.J. (2010) 'European Consumer Exposure To Cosmetic Products a

Framework for Conducting Population Exposure Assessments Part 2'. Food and Chemical

Toxicology 49:408-422.

Tierney, A.C., McMonagle, J., Shaw, D.I., Gulseth, H.L., Helal, O., Saris, W.H.,

Paniagua, J.A., Gołąbek-Leszczyñska, I., Defoort, C., Williams, C.M., Karsltröm, B.,

Vessby, B., Dembinska-Kiec, A., López-Miranda, J., Blaak, E.E., Drevon, C.A., Gibney,

M.J., Lovegrove, J.A. and Roche, H.M. (2010) 'Effects of dietary fat on modification of

insulin sensitivity and on other risk factors of the metabolic syndrome - Lipgene a

European randomized dietary intervention study'. International Journal of Obesity, e pub

ahead of print.

Leite, J.C., Hearty, A.P., Nugent, A.P. and Gibney, M.J. (2010) 'A method for assessing

dietary intakes of n-3 long-chain polyunsaturated fatty acids and trans fatty acids in an

Irish adult population'. International Journal of Food Science and Nutrition, 61 (6):583-

599.

Iménez-Gómez, Y., Marín, C., Peérez-Martínez, P., Hartwich, J., Malczewska-Malec, M.,

Golabek, I., Kiec-Wilk, B., Cruz-Teno, C., Rodríguez, F., Gómez, P., Gómez-Luna, M.J.,

Defoort, C., Gibney, M.J., Pérez-Jiménez, F., Roche, H.M. and López-Miranda, J. (2010)

'A low-fat, high-complex carbohydrate diet supplemented with long-chain (n-3) fatty

acids alters the postprandial lipoprotein profile in patients with metabolic syndrome'.

Journal of Nutrition, 140 (9):1595-1601.

Professor Ronan Gormley

Gormley, T.R. (2010) 'Ethics and sustainability in the seafood chain'. Food Science and



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Technology, 24 (3):14-17.

Professor Nick Holden

O'Rourke, S.M., and Holden, N.H. (2011) 'Optical sensing and chemometric analysis of

soil organic carbon - a cost effective alternative to conventional laboratory methods?' Soil

Use and Management, 27 (2):143-155.

Tang, J.L., McDonald, S., Peng, X.H., Samadder, S.R., Murphy, T.M. and Holden, N.M.

(2011) 'Modelling Cryptosporidium oocysts transport in small ungauged agricultural

catchments'. Water Research 45(12):3665-3680.

Cao, J., Holden, N.M., Lu, X.T. and Du, G. (2011) 'The effect of grazing management on

plant species richness on the Qinghai-Tibetan Plateau'. Grass and Forage Science,

66:333-336.

Piwowarczyk, A., Giuliani, G. and Holden, N.M. (2011) 'Can soil moisture deficit be used

to forecast when soils are at high risk of damage owing to grazing animals?’ Soil Use and

Management, 27:255-263.

Holden, N.M., Connolly, J., Seaquist, J.W. and Ward, S.M. (2011) 'Detecting recent

disturbance on Montane blanket bogs in the Wicklow Mountains, Ireland using the

MODIS enhanced vegetation index'. International Journal of Remote Sensing, 32:2377-

2393.

O'Rourke, S.M., Argentati, I. and Holden, N.M. (2011) 'The effect of region of interest

size on model calibration for soil organic carbon prediction from hyperspectral images of

prepared soils'. Journal of Near Infrared Spectroscopy, 19:161-170.

Holden, N.M. and Connolly, J. (2011) 'Estimating the carbon pool of a blanket peat region

using a peat depth inference model'. Catena, 86:75-85.

Connolly, J., Holden, N.M., Connolly, J., Seaquist, J.W. and Ward, S.W. (2011)

'Detecting recent disturbance on Montane blanket bogs in the Wicklow Mountains,

Ireland using the MODIS enhanced vegetation index'. International Journal of Remote

Sensing, 32 (9):2377-2393.

Dr Jean-Christophe Jacquier

Harbourne, N., Jacquier, J.C. and O'Riordan, D. (2011) 'Effects of addition of phenolic

compounds on the acid gelation of milk'. International Dairy Journal, 21 (3):185-191.

Marete, E.N., Jacquier, J.C. and O’Riordan, D. (2011) 'Feverfew as a source of bioactives

for functional foods: Storage stability in model beverages'. Journal of Functional Foods, 3

(1):38-43.

Dr James Lyng

Munoz, A., Palgan, I., Noci, F., Morgan, D.J., Cronin, D.A., Whyte, P. and Lyng, J.G.

(2011) 'Combinations of High Intensity Light Pulses and Thermosonication for the

inactivation of Escherichia coli in orange juice'. Food Microbiology, 28 (6):1200-1204.

Caminiti, I.M., Noci, F., Munoz, A., Whyte, P., Morgan, D.J., Cronin, D.A. and Lyng,

J.G. (2011) 'Impact of selected combinations of non-thermal processing technologies on

the quality of an apple and cranberry juice blend'. Food Chemistry, 124 (4):1387-1392.

Caminiti, I.M., Palgan, I., Noci, F., Munoz, A., Whyte, P., Cronin, D.A., Morgan, D.J.




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and Lyng, J.G. (2011) 'The effect of pulsed electric fields (PEF) in combination with high

intensity light pulses (HILP) on Escherichia coli inactivation and quality attributes in

apple juice'. Innovative Food Science and Emerging Technologies, 12 (2):118-123.

Palgan, I., Caminiti, I.M., Munoz, A., Noci, F., Whyte, P., Morgan, D.J., Cronin, D.A.

and Lyng, J.G. (2011) 'Combined effect of selected non-thermal technologies on

Escherichia coli and Pichia fermentans inactivation in an apple and cranberry juice blend

and on product shelf life'. International Journal of Food Microbiology, 151 (1):1-6.

Zell, M., Lyng, J.G., Morgan, D.J. and Cronin, D.A. (2011) 'Minimising heat losses

during batch ohmic heating of solid food'. Food and Bioproducts Processing, 89:128-134.

Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Fanning, S. and Whyte, P.

(2011) 'Efficacy of high intensity pulsed light for the microbiological decontamination of

poultry, associated packaging and contact surfaces'. Foodborne Pathogens and Disease,

8:109-117.

Haughton, P.N., Lyng, J., Cronin, D.A., Morgan, D.J., Fanning, S. and Whyte, P. (2011)

'Efficacy of UV light treatment for the microbiological decontamination of chicken,

associated packaging and contact surfaces'. Journal of Food Protection, 74:565-572.

Arimi, J.M., Duggan, E., O'Sullivan, M., Lyng, J.G. and O'Riordan, E.D. (2011) 'Effect of

protein starch ratio on microwave expansion of imitation cheese based product'. Food

Hydrocolloids, 25 (5):1069-1076.

Dr Kevin McDonnell

Fagan, C.C., Everard, C.D. and McDonnell, K. (2011) 'Prediction of moisture, calorific

value, ash and carbon content of two dedicated bioenergy crops using near-infrared

spectroscopy'. Bioresource Technology, 102:5200-5206.

Barry, B., Barron, U.G., Butler, F., Ward, S, and McDonnell, K. (2011) 'Verification of

sheep identity by means of a retinal recognition system'. Transactions of the ASABE,

54:1161-1167.

Mc Inerney, B., Corkery, G., Ayalew, G., Ward, S. and Mc Donnell, K. (2011)

'Preliminary in vivo study on the potential application of a novel method of e-tracking to

facilitate traceability in the poultry food chain'. Computers and Electronics in Agriculture,

77:1-6.

McDonnell K. (2011) 'Combustion Characteristics of Peat with Meat and Bone Meal in a

Pilot'. The open fuels and energy science journal, 4:9-16.

McCarthy, U., Ayalew, G., Butler, F., McDonnell, K. and Ward, S. (2010) 'The Effect of

increased Interrogation zone, Reader Antenna Polarisation and application factors in the

performance of UHF RFID tag detection on Modified Atmosphere Packaged Meat'.

Packaging Technology and Science, 23 (6):339-350.


McMahon, J.A. (2011) 'Biodiversity and Food - the WTO TRIPS Negotiations'. Journal

of Human Rights and the Environment, 2 (2):217-234.

Switzer, S. and McMahon, J.A. (2011) 'EU Biofuels Policy - Raising the Question of

WTO Compatibility'. International and Comparative Law Quarterly, 60:713-736.



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Professor Frank Monahan

Osorio, M.T., Moloney, A.P., Brennan, L. and Monahan, F.J. (2011) 'Authentication of

beef production systems using a metabolomics based approach'. Animal.

Caprioli, I., O'Sullivan, M. and Monahan, F.J. (2011) 'Interference of sodium caseinate in

the TBARS assay'. Food Chemistry, 124:1284-1287.

Osorio, M.T, Moloney, A.P., Schmidt, O. and Monahan, F.J. (2011) 'Multielement isotope

analysis of bovine muscle for determination of international geographical origin of meat'.

Journal of Agricultural and Food Chemistry, 59 (7):3285-3294.

Osorio, M.T, Moloney, A.P., Schmidt, O. and Monahan, F.J. (2011) 'Beef authentication

and retrospective dietary verification using stable isotope ratio analysis of bovine muscle

and tail hair'. Journal of Agricultural and Food Chemistry, 59 (7):3295-3305.

Dunne, P.G., Rogalski, J., Childs, S, Monahan, F.J., Kenny, D.A. and Moloney, A.P.

(2011) 'Long chain n-3 polyunsaturated fatty acid concentration and color and lipid

stability of muscle from heifers offered a ruminally protected fish oil supplement'. Journal

of Agricultural and Food Chemistry, 59:5015-5025.

Rohrle, F.T., Moloney, A.P., Black, A., Osorio, M.T., Sweeney, T., Schmidt, O. and

Monahan FJ (2011) 'alpha-Tocopherol stereoisomers in beef as an indicator of vitamin E

supplementation in cattle diets'. Food Chemistry, 124 (3):935-940.

Harrison, S.M., Schmidt, O., Moloney, A.P., Kelly, S.D., Rossmann, A., Schellenberg, A.,

Camin, F., Perini, M., Hoogewerff, J. and Monahan F.J. (2011) 'Tissue turnover in ovine

muscle and lipids as recorded by multiple (H, C, O, S) stable isotope ratios'. Food

Chemistry, 124 (1):291-297.

Dunne, P.D., Monahan, F.J. and Moloney, A.P. (2011) 'Current perspectives on the darker

beef often reported from extensively-managed cattle: Does physical activity play a

significant role?' Livestock Science, 142:1-22.

Vasta, V., Luciano, G., Dimauro, C., Röhrle, F., Priolo, A., Monahan, F.J. and Moloney,

A.P. (2011) 'The volatile profile of longissimus dorsi muscle of heifers fed pasture,

pasture silage or cereal concentrate: implication for dietary discrimination'. Meat Science,

87 (3):282-289.

Röhrle, F.T., Moloney, A.P., Osorio, M.T., Luciano, G., Priolo, A., Caplan, P., and

Monahan, F.J. (2011) 'Carotenoids, colour and reflectance parameters in bovine adipose

tissue to discriminate between feeding systems'. Meat Science, 88:347-353.

Auerswald, K., Rossmann, A., Schäufele, R., Schwertl, M., Monahan, F.J. and Schnyder,

H. (2011) 'Does natural weathering change the stable isotope composition (2H, 13C, 15N,

18O and 34S) of cattle hair?'. Rapid Communications in Mass Spectrometry, 25:1-8.

Luciano, G., Moloney, A.P., Priolo, A., Röhrle, F.T., Vasta, V., Biondi, L., Lόpez-

Andrés, P., Grasso, S. and Monahan, F.J. (2011) 'Pro-oxidant and antioxidant components

in muscle and the oxidative stability of beef from cattle grown on forage or concentrate-

based rations'. Journal of Animal Science, 89:3759-3768.

Noci, F., Monahan, F.J. and Moloney, A.P. (2011) 'The fatty acid profile of muscle and

adipose tissue of lambs fed camelina or linseed as oil or seeds'. Animal, 5 (1):134-147.

Luciano, G., Vasta, V., Monahan, F.J., López-Andrés, P., Biondi, L., Lanza, M. and

Priolo, A. (2011) 'Antioxidant status, colour stability and myoglobin resistance to


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oxidation of longissimus dorsi muscle from lambs fed a tannin-containing diet'. Food

Chemistry, 124:1036-1042.

Professor John O'Doherty

Varley, P.F., Flynn, B., Callan, J.J. and O'Doherty, J.V. (2011) 'Effect of crude protein

and phosphorus level on growth performance, bone mineralisation and phosphorus,

calcium and nitrogen utilisation in grower-finisher pigs'. Archives of Animal Nutrition, 65

(2):134-147.

Leonard, S.G., Sweeney, T., Bahar, B., Lynch, B.P. and O'Doherty, J.V. (2011) 'Effect of

dietary seaweed extracts and fish oil supplementation in sows on performance, intestinal

microflora, intestinal morphology, volatile fatty acid concentrations and immune status of

weaned pigs'. British Journal of Nutrition, 105 (4):549-560.

Varley, P.F., Sweeney, T., Ryan, M.T. and O'Doherty, J.V. (2011) 'The effect of

phosphorus restriction during the weaner-grower phase on compensatory growth, serum

osteocalcin and bone mineralization in gilts'. Livestock Science, 135 (2-3):282-288.

Ryan, W.F., Lynch, P.B. and O'Doherty, J.V. (2011) 'Effect of dietary phosphorus on the

development of bone mineral density of pigs assessed using dual energy X-ray

absorptiometry'. Livestock Science, 137 (1-3):101-107.

McDonnell, P., O’Shea, C., Figat, S., Callan, J.J. and O’Doherty, J.V. (2011) 'The

response of growth performance, nitrogen and phosphorus excretion of growing-finishing

pigs to diets containing incremental levels of maize dried distiller’s grains with soluble'.

Animal Feed Science and Technology, 169 (1-2):104-112.

Pauly, C., Spring, P., Gahan, D. and O’Doherty, J.V. (2011) 'The effect of cereal type and

enzyme supplementation on carcass characteristics, volatile fatty acids and intestinal

microflora and boar taint in entire male pigs'. Animal, 5 (3):378-386.

Alam, T., Bahar, B., Waters, S.M., McGee, M., O'Doherty, J.V. and Sweeney, T. (2011)

'Functional characterisation of the bovine neuropeptide Y gene promoter and evaluation

of the transcriptional activities of promoter haplotypes'. Molecular Biology Reports,

PMID:21562764 .

O'Shea, C.J., Sweeney, T., Lynch, M.B., Callan, J.J. and O'Doherty, J.V. (2011)

'Modification of selected bacteria and markers of protein fermentation in the distal

gastrointestinal tract of pigs upon consumption of chitosan is accompanied by heightened

manure odor emissions'. Journal of Animal Science, 89 (5):1366-1375.

Smith, A.G., O'Doherty, J.V., Reilly, P., Ryan, M.T., Bahar, B. and Sweeney, T. (2011)

'The effects of laminarin derived from Laminaria digitata on measurements of gut health:

selected bacterial populations, intestinal fermentation, mucin gene expression and

cytokine gene expression in the pig'. The British Journal of Nutrition, 105 (5):669-677.

Hager, A.S., Ryan, L.A.M., Schwab, C., Ganzle, M., O'Doherty, J.V. and Arendt, E.K.

(2011) 'Influence of the soluble fibres inulin and oat β-glucan on quality of dough and

bread'. European Food Research and Technology, 232 (3):405-413.

Sweeney, T., Dillon, S., Fanning, J., Egan, J., O'Shea, C.J., Figat, S., Gutierrez, J.J.M.,

Mannion, C., Leonard, F. and O'Doherty, J.V. (2011) 'Evaluation of seaweed-derived

polysaccharides on indices of gastrointestinal fermentation and selected populations of

microbiota in newly weaned pigs challenged with Salmonella Typhimurium'. Animal


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Feed Science and Technology, 165 (1-2):85-94.

O'Shea, C.J., Sweeney, T., Lynch, M.B., Gahan, D.A., Flynn, B.A. and O'Doherty, J.V.

(2011) 'The effect of introducing purified beta-glucans to a wheat-based diet on total tract

digestibility and gaseous manure emissions from pigs as compared with consumption of a

beta-glucan-rich, barley-based diet'. Animal Feed Science and Technology, 165 (1-2):95-

104.

Ryan, W.F., Lynch, P.B. and O'Doherty, J.V. (2011) 'Compensatory effect of dietary

phosphorus on performance of growing pigs and development of bone mineral density

assessed using dual energy X-ray absorptiometry'. Livestock Science, 138 (1-3):89-95.

Varley, P.F., Callan, J.J. and O'Doherty, J.V. (2011) 'Effect of dietary phosphorus and

calcium level and phytase addition on performance, bone parameters, apparent nutrient

digestibility, mineral and nitrogen utilization of weaner pigs and the subsequent effect on

finisher pig bone parameters'. Animal Feed Science and Technology, 165 (3-4):201-209.

Varley, P.F., Flynn, B., Callan, J.J. and O'Doherty, J.V. (2011) 'Effect of phytase level in

a low phosphorus diet on performance and bone development in weaner pigs and the

subsequent effect on finisher pig bone development'. Livestock Science, 138 (1-3):152-

158.

Meade, G., Pierce, K., O'Doherty, J.V., Mueller, C., Lanigan, G. and Mc Cabe, T. (2011)

'Ammonia and nitrous oxide emissions following land application of high and low

nitrogen pig manures to winter wheat at three growth stages'. Agriculture, Ecosystems and

Environment, 140 (1-2):208-217.




Technology, 163 (2-4):194-199.

O'Shea, C.J., Lynch, M.B., Sweeney, T., Gahan, D.A., Callan, J.J. and O'Doherty, J.V.

(2010) 'Comparison of a wheat-based diet supplemented with purified {beta}-glucans,

with an oat-based diet on nutrient digestibility, nitrogen utilization, distal gastrointestinal

composition and manure odor and ammonia emissions from finishing pigs'. Journal of

Animal Science, 89 (2):438-447.


maternal fish oil and seaweed extract supplementation on colostrum and milk

composition, humoral immune response, and performance of suckled piglets'. Journal of

Animal Science, 88 (9):2988-2997.

Professor Colm O'Donnell

Gowen, A.A., Downey, G., Esquerre, C. and O'Donnell, C.P. (2011) 'Preventing over-

fitting in PLS calibration models of near-infrared (NIR) spectroscopy data using

regression coefficients'. Journal of Chemometrics, 25 (7, SI):375-381.

Taghizadeh, M., Gowen, A.A. and O'Donnell, C.P. (2011) 'The potential of visible-near

infrared hyperspectral imaging to discriminate between casing soil, enzymatic browning

and undamaged tissue on mushroom (Agaricus bisporus) surfaces'. Computers and

Electronics in Agriculture, 77 (1):74-80.

Everard, C.D., O'Callaghan, D.J., Mateo, M.J., Castillo, M., Payne, F.A. and O'Donnell,


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C.P. (2011) 'Effects of milk composition, stir-out time, and pressing duration on curd

moisture and yield'. Journal of Dairy Science, 94 (6):2673-2679.

Torres, B., Tiwari, B.K., Patras, A., Cullen, P.J., Brunton, N. and O'Donnell, C.P. (2011)

'Stability of anthocyanins and ascorbic acid of high pressure processed blood orange juice

during storage'. Innovative Food Science and Emerging Technologies, 12 (2):93-97.

Taghizadeh, M., Gowen, A.A. and O'Donnell, C.P. (2011) 'Comparison of hyperspectral

imaging with conventional RGB imaging for quality evaluation of Agaricus bisporus

mushrooms'. Biosystems Engineering, 108 (2):191-194.

Torres, B., Tiwari, B.K., Patras, A., Wijngaard, H.H., Brunton, N., Cullen, P.J. and

O'Donnell, C.P. (2011) 'Effect of ozone processing on the colour, rheological properties

and phenolic content of apple juice'. Food Chemistry, 124 (3):721-726.

Hennessy, S., Downey, G. and O'Donnell, C.P. (2010) 'Attempted Confirmation of the

Provenance of Corsican PDO Honey Using FT-IR Spectroscopy and Multivariate Data

Analysis'. Journal of Agriculture and Food Chemistry, 58 (17):9401-9406.

Adekunte, A.O., Tiwari, B.K. and O'Donnell, C.P. (2010) 'Exposure assessment of

dioxins and dioxin-like PCBs in pasteurised bovine milk using probabilistic modelling'.

Chemosphere, 81 (4):509-516.

Adekunte, A.O., Tiwari, B.K., Cullen, P.J., Scannell, A.G.M. and O'Donnell, C.P. (2010)

'Effect of sonication on colour, ascorbic acid and yeast inactivation in tomato juice'. Food

Chemistry, 122 (3):500-507.

Professor Dolores O'Riordan

Halpin, R.M., Brady, D.B. and O'Riordan, E.D. (2011) 'The effect of untreated and

enzyme treated commercial dairy powders on the growth and adhesion of Streptococcus

mutans'. Lwt-Food Science and Technology, 44 (6):1525-1532.




El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Reducing salt in

imitation cheese; Effects on manufacture and functional properties'. Food Research

International, 100 (4):1650-1655.

El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Casein hydration

and fat emulsification during manufacture of imitation cheese and effects of emulsifying

salts reduction'. Journal of Food Engineering, 103 (2):179-187.

Harbourne, N., Jacquier, J.C. and O'Riordan, E.D. (2011) 'Effects of addition of phenolic

compounds on the acid gelation of milk'. International Dairy Journal, 21 (3):185-191.

El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Effect of chelating

salt type on casein hydration and fat emulsification during manufacture and post-

manufacture functionality of imitation cheese'. Journal of Food Engineering, 2 (102):145-

-153.

Marete, E.N., Jacquier, J.C. and O'Riordan, D (2011) 'Feverfew as a source of bioactives

for functional foods: Storage stability in model beverages'. Journal of Functional Foods, 3

(1):38-43.


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El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Effect of cation,

sodium or potassium, on casein hydration and fat emulsification during imitation cheese

manufacture and post manufacture functionality'. LWT - Food Science and Technology,

44 (10):2012-2018.

Mr Mick O'Sullivan

Caprioli, I., O'Sullivan, M. and Monahan, F.J. (2011) 'Interference of sodium caseinate in

the TBARS assay'. Food Chemistry, 124:1284-1287.

El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Effect of chelating

salt type on casein hydration and fat emulsification during manufacture and post-

manufacture functionality of imitation cheese'. Journal of Food Engineering, 2 (102):145-

-153.

Halpin, R.M. Brady. D.B., O’Riordan, E.D. and O'Sullivan, M. (2011) 'Determination of

the effect of dairy powders on adherence of Streptococcus sobrinus and Streptococcus

salivarius to hydroxylapatite and growth of these bacteria'. Journal of Functional Foods,

3:280-289.

Halpin, R.M. Brady. D.B., O’Riordan, E.D. and O’Sullivan, M. (2011) 'The Effect of

Untreated and Enzyme-Treated Commercial Dairy Powders on the Growth and Adhesion

of Streptococcus mutans'. Lwt-Food Science and Technology, 44:1525-1532.

El-Bakry, M., Duggan, E., O’Riordan, E.D. and O'Sullivan, M. (2011) 'Effect of cation,

sodium or potassium, on casein hydration and fat emulsification during imitation cheese

manufacture'. Lwt-Food Science and Technology, 44:2012-2018.

El-Bakry, M., Beninati, F., Duggan, E., O’Riordan, E.D. and O’Sullivan, M (2011)

'Reducing salt in imitation cheese: effects on manufacture and functional properties'. Food

Research International, 44:589-596.

El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Casein hydration

and fat emulsification during manufacture of imitation cheese and effects of emulsifying

salts reduction'. Journal of Food Engineering, 103 (2):179-187.




Dr Karina Pierce

Whelan, S. J., Mulligan, F. J., Flynn, B., McCarney, C., and Pierce, K. M. (2011) 'Effect

of forage source and a supplementary methionine hydroxyl analogue on nitrogen balance

in lactating dairy cows offered a low crude protein diet'. Journal of Dairy Science,

94:5080-5089.

Prendiville, R., Pierce, K.M., Delaby, L. and Buckley, F. (2011) 'Animal performance and

production efficiencies of Holstein-Friesian, Jersey and Jersey×Holstein-Friesian cows

throughout lactation'. Livestock Science, 138:25-33.

McCarthy, B., Delaby, L., Pierce, K.M., Journot, F. and Horan, B. (2011) 'Meta-analysis

of the impact of stocking rate on the productivity of pasture-based milk production

systems'. Animal, 5(5):784-794.

Meade, G., Pierce, K., O'Doherty, J.V., Mueller, C., Lanigan, G. and Mc Cabe, T. (2011)



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'Ammonia and nitrous oxide emissions following land application of high and low

nitrogen pig manures to winter wheat at three growth stages'. Agriculture, Ecosystems and

Environment, 140 (1-2):208-217.




Technology, 163 (2-4):194-199.

Coleman, J., Pierce, K.M., Berry, D.P., Brennan A. and Horan B. (2010) 'Dry matter

intake and feed efficiency profiles of 3 genotypes of Holstein-Friesian within pasture-

based systems of milk production'. Journal of Dairy Science, 92 (2):4318-4331.

Coleman, J., Pierce, K.M., Berry, D.P., Brennan, A. and Horan B. (2010) 'Increasing milk

solids production across lactation through genetic selection and intensive pasture-based

feed system'. Journal of Dairy Science, 93 (9):4302-4317.

Professor Helen Roche

McGillicuddy, F.C., Harford, K.A., Reynolds, C.M., Oliver, E., Claessens, M., Mills,

K.H.G. and Roche, H.M. (2011) 'Lack of Interleukin-1 Receptor I (IL-1RI) Protects Mice

From High-Fat Diet Induced Adipose Tissue Inflammation Coincident With Improved

Glucose Homeostasis'. Diabetes, 60:1688-1698.

van Hees, A.M.J., Jans, A,, Hul, G.B., Roche, H.M., Saris, W.H.M. and Blaak, E.E.

(2011) 'Skeletal Muscle Fatty Acid Handling in Insulin Resistant Men'. Obesity, 19:1350-

1359.

Perez-Martinez, P., Delgado-Lista, J., Garcia-Rios, A., Ferguson, J.F., Gulseth, H.L.,

Williams, C.M., Karlstrom, B., Kiec-Wilk, B., Blaak, E.E., Helal, O., Malczewska-Malec,

M,, Defoort, C., Riserus, U,, Saris, W.H., Lovegrove, J.A., Drevon, C.A., Roche, H.M.

and Lopez-Miranda, J. (2011) 'Calpain-10 interacts with plasma saturated fatty acid

concentrations to influence insulin resistance in individuals with the metabolic syndrome'.

American Journal of Clinical Nutrition, 93:1136-1141.

Perez-Martinez, P., Delgado-Lista, J., Garcia-Rios, A., Mc Monagle, J., Gulseth, H.L.,

Ordovas, J.M., Shaw, D.I., Karlstrom, B., Kiec-Wilk, B., Blaak, E.E., Helal, O.,

Malczewska-Malec, M., Defoort, C., Riserus, U., Saris, W.H.M., Lovegrove, J.A.,

Drevon, C.A., Roche, H.M. and Lopez-Miranda, J. (2011) 'Glucokinase Regulatory

Protein Genetic Variant Interacts with Omega-3 PUFA to Influence Insulin Resistance

and Inflammation in Metabolic Syndrome'. PLoS ONE 6(6): e20555.

doi:10.1371/journal.pone.0020555

Delgado-Lista, J., Perez-Martinez, P., Garcia-Rios, A., Phillips, C.M., Williams, C.M.,

Gulseth, H.L., Helal, O., Blaak, E.E., Kiec-Wilk, B., Basu, S., Drevon, C.A., Defoort, C.,

Saris, W.H., Wybranska, I., Riserus, U., Lovegrove, J.A., Roche, H.M. and Lopez-

Miranda, J .(2011) 'Pleiotropic effects of TCF7L2 gene variants and its modulation in the

metabolic syndrome: From the LIPGENE study'. Atherosclerosis, 214:110-116.

Draper, E., Reynolds, C.M., Canavan, M., Mills, K.H., Loscher, C.E. and Roche, H.M.

(2011) 'Omega-3 fatty acids attenuate dendritic cell function via NF-kappa B independent

of PPAR gamma'. Journal of Nutritional Biochemistry, 22:784-790.

Tierney, A.C., McMonagle, J., Shaw, D.I., Gulseth, H.L., Helal, O., Saris, W.H.M.,


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Paniagua, J.A., Golabek-Leszczynska, I., Defoort, C., Williams, C.M., Karsltrom, B.,

Vessby, B., Dembinska-Kiec, A., Lopez-Miranda, J., Blaak, E.E., Drevon, C.A., Gibney,

M.J., Lovegrove, J.A. and Roche, H.M. (2011) 'Effects of dietary fat modification on

insulin sensitivity and on other risk factors of the metabolic syndrome-LIPGENE: a

European randomized dietary intervention study'. International Journal of Obesity,

35:800-809.

Phillips, C.M., Goumidi, L., Bertrais, S., Field, M.R., McManus, R., Hercberg, S., Lairon,

D., Planells, R. and Roche, H.M. (2011) 'Gene-nutrient interactions and gender may

modulate the association between ApoA1 and ApoB gene polymorphisms and metabolic

syndrome risk'. Atherosclerosis, 214 (2):408-415.

Garcia-Rios, A., Delgado-Lista, J., Perez-Martinez, P., Phillips, C.M., Ferguson, J.F.,

Gjelstad, I.M., Williams, C.M., Karlström, B., Kieć-Wilk, B., Blaak, E.E., Lairon, D.,

Planells, R., Malczewska-Malec, M., Defoort, C., Riserus, U., Saris, W.H., Lovegrove,

J.A., Drevon, C.A., Roche, H.M. and Lopez-Miranda, J. (2011) 'Genetic variations at the

lipoprotein lipase gene influence plasma lipid concentrations and interact with plasma n-6

polyunsaturated fatty acids to modulate lipid metabolism'. Atherosclerosis, 218 (2):416-

422.

Jans, A., Sparks, L.M., van Hees, A.M., Gjelstad, I.M., Tierney, A.C., Risérus, U.,

Drevon, C.A., Roche, H.M., Schrauwen, P. and Blaak, E.E. (2011) 'Transcriptional

metabolic inflexibility in skeletal muscle among individuals with increasing insulin

resistance'. Obesity, 19 (11):2158-2166.

Phillips, C.M., Goumidi, L., Bertrais, S., Field, M.R., Cupples, L.A., Ordovas, J.M.,

McMonagle, J., Defoort, C., Lovegrove, J.A., Drevon, C.A., Blaak, E.E., Kiec-Wilk, B.,

Riserus, U., Lopez-Miranda, J., McManus, R., Hercberg, S., Lairon, D., Planells, R. and

Roche, H.M. (2010) 'ACC2 gene polymorphisms, metabolic syndrome, and gene-nutrient

interactions with dietary fat'. Journal of Lipid Research, 51 (12):3500-3507.

O'Connor, A., Gibney, J. and Roche, H.M. (2010) 'Metabolic and hormonal aspects of

polycystic ovary syndrome: the impact of diet'. The Proceedings of the Nutrition Society,

69 (4):628-635.

Morine, M.J., McMonagle, J., Toomey, S., Reynolds, C.M., Moloney, A.P., Gormley,

I.C., O’Gaora, P. and Roche, H.M. (2010) 'Bi-directional gene set enrichment and

canonical correlation analysis identify key diet-sensitive pathways and biomarkers of

metabolic syndrome'. BMC Bioinformatics, 11 (1).

Iménez-Gómez, Y., Marín, C., Peérez-Martínez, P., Hartwich, J., Malczewska-Malec, M.,

Golabek, I., Kiec-Wilk, B., Cruz-Teno, C., Rodríguez, F., Gómez, P., Gómez-Luna, M.J.,

Defoort, C., Gibney, M.J., Pérez-Jiménez, F., Roche, H.M. and López-Miranda, J. (2010)

'A low-fat, high-complex carbohydrate diet supplemented with long-chain (n-3) fatty

acids alters the postprandial lipoprotein profile in patients with metabolic syndrome'.

Journal of Nutrition, 140 (9):1595-1601.


Halliday, S., Ilan, J. and Scott, C. (2011) 'The Public Management of Liability Risks'.

Oxford Journal of Legal Studies, 31 (3):527-550.


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Brown, C. and Scott, C. (2011) 'Regulation, Public Law and Better Regulation'. European

Public Law, 17 (3):467-484.

Casey, D. and Scott, C. (2011) 'The Crystallization of Regulatory Norms'. Journal of Law

and Society, 38 (1):76-95.

Scott, C., Cafaggi, F. and Senden, L. (2011) 'The Conceptual and Constitutional

Challenge of Transnational Private Regulation'. Journal of Law and Society, 38 (1):1-19.


Kamruzzaman, M., ElMasry, G., Da-Wen Sun, and Allen, P. (2011) 'Application of NIR

Hyperspectral Imaging for Discrimination of Lamb Muscles'. Journal of Food

Engineering, 104 (3):332-340.

ElMasry, G., Iqbal, A., Da-Wen Sun, Allen, P. and Ward, P. (2011) 'Quality Classification

of Cooked, Sliced Turkey Hams Using NIR Hyperspectral Imaging System'. Journal of

Food Engineering, 103 (3):333-344.

Kiani, H., Zhang, Z., Delgado A. and Da-Wen Sun (2011) 'Ultrasound Assisted

Nucleation of Some Liquid and Solid Model Foods during Freezing'. Food Research

International, 44 (9):2915-2921.

Kiani, H. and Da-Wen Sun (2011) 'Water Crystallization and its Importance to Freezing

of Foods: A Review'. Trends in Food Science & Technology, 22 (8):407-426.

Weeranantanaphan, J., Downey, G., Allen, P. and Da-Wen Sun (2011) 'A Review of Near

Infrared Spectroscopy in Muscle Food Analysis: 2005-2010'. Journal of Near Infrared

Spectroscopy, 19 (2):61-104.

Iqbal, A., Valous, N.A., Da-Wen Sun and Allen, P. (2011) 'Parsimonious Classification of

Binary Lacunarity Data Computed from Food Surface Images Using Kernel Principal

Component Analysis and Artificial Neural Networks'. Meat Science, 87 (2):107-114.

Jackman, P., Da-Wen Sun and Allen, P. (2011) 'Recent Advances in the Use of Computer

Vision Technology in the Quality Assessment of Fresh Meats'. Trends in Food Science &

Technology, 22 (4):185-197.

Costa, C., Antonucci, F., Pallottino, F., Aguzzi, J., Da-Wen Sun and Menesatti, P. (2011)

'Shape Analysis of Agricultural Products: A Review of Recent Research Advances and

Potential Application to Computer Vision'. Food and Bioprocess Technology, 4 (5):673-

692.

ElMasry, G., Da-Wen Sun and Allen, P. (2011) 'Non-Destructive Determination of Water-

Holding Capacity in Fresh Beef by using NIR Hyperspectral Imaging'. Food Research

International, 44 (9):2624-2633.

Zhou, X.L., Al Naib, A., Da-Wen Sun and Lonergan, P. (2010) 'Bovine Oocyte

Vitrification Using the Cryotop Method: Effect of Cumulus Cells and Vitrification

Protocol on Survival and Subsequent Development'. Cryobiology, 61 (1):66-72.

Valous, N. A., Drakakis K. and Da-Wen Sun (2010) 'Detecting Fractal Power-law Long-

range Dependence in Pre-sliced Cooked Pork Ham Surface Intensity Patterns Using

Detrended Fluctuation Analysis'. Meat Science, 86 (2):289-297.

Norton, T., Grant, J., Fallon R. and Da-Wen Sun (2010) 'Improving the Representation of

Thermal Boundary Conditions of Livestock during CFD Modelling of the Indoor


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Environment'. Computers and Electronics in Agriculture, 73 (1):17-36.

Professor Torres Sweeney

Varley, P.F., Sweeney, T., Ryan, M.T. and O'Doherty, J.V. (2011) 'The effect of

phosphorus restriction during the weaner-grower phase on compensatory growth, serum

osteocalcin and bone mineralization in gilts'. Livestock Science, 135 (2-3):282-288.

Smith, A.G., O'Doherty, J.V., Reilly, P., Ryan, M.T., Bahar, B. and Sweeney, T. (2011)

'The effects of laminarin derived from Laminaria digitata on measurements of gut health:

selected bacterial populations, intestinal fermentation, mucin gene expression and

cytokine gene expression in the pig'. British Journal of Nutrition, 105 (5):1-9.

Bahar, B., O'Halloran, F., Callanan, M.J., McParland, S., Giblin, L. and Sweeney, T.

(2011) 'Bovine lactoferrin (LTF) gene promoter haplotypes have different basal

transcriptional activities'. Animal Genetics, 42 (3):270-279.

O'Shea, C.J., Sweeney, T., Lynch, M.B., Callan, J.J. and O'Doherty, J.V. (2011)

'Modification of selected bacteria and markers of protein fermentation in the distal

gastrointestinal tract of pigs upon consumption of chitosan is accompanied by heightened

manure odor emissions'. Journal of Animal Science, 89 (5):1366-1375.

Bolton, D.J., Monaghan, A., Byrne, B., Fanning, S., Sweeney, T. and McDowell, D.A.

(2011) 'Incidence and survival of non-O157 verocytotoxigenic Escherichia coli in soil'.

Journal of Applied Microbiology, 111:484-490.

Alam, T., Bahar, B., Waters, S.M., McGee, M., O'Doherty, J.V. and Sweeney, T. (2011)

'Functional characterisation of the bovine neuropeptide Y gene promoter and evaluation

of the transcriptional activities of promoter haplotypes'. Molecular Biology Reports,

PMID:21562764 .

Hassan, M., Good, B., Hanrahan, J.P., Campion, D., Sayers, G., Mulcahy, G. and

Sweeney, T. (2011) 'The dynamic influence of the DRB1*1101 allele on the resistance of

sheep to experimental Teladorsagia circumcincta infection'. Veterinary Research, 42

(1):46.

Hassan, M., Hanrahan, J.P., Good, B., Mulcahy, G. and Sweeney, T. (2011) 'A differential

interplay between the expression of Th1/Th2/Treg related cytokine genes in Teladorsagia

circumcincta infected DRB1*1101 carrier lambs'. Veterinary Research, 42 (1):45.

Taraktsoglou, M., Szalabska, U., Magee, D.A., Browne, J.A., Sweeney, T., Gormley, E.

and MacHugh, D.E. (2011) 'Transcriptional profiling of immune genes in bovine

monocyte-derived macrophages exposed to bacterial antigens'. Veterinary Immunology

and Immunopathology, 140 (1-2):130-139.

Rohrle, F.T., Moloney, A.P., Black, A., Osorio, M.T., Sweeney, T., Schmidt, O. and

Monahan, F.J. (2011) 'Alpha-Tocopherol stereoisomers in beef as an indicator of vitamin

E supplementation in cattle diets'. Food Chemistry, 124 (3):935-940.


dietary seaweed extracts and fish oil supplementation in sows on performance, intestinal

microflora, intestinal morphology, volatile fatty acid concentrations and immune status of

weaned pigs'. British Journal of Nutrition, 105:549-560.

Leonard, S.G., Sweeney, T., Bahar, B., Lynch, B.P. and O'Doherty, J.V. (2011) 'Effects of

dietary seaweed extract supplementation in sows and post-weaned pigs on performance,


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intestinal morphology, intestinal microflora and immune status'. British Journal of

Nutrition, 106:688-699.

Pang, W.Y., Earley, B., Murray, M., Sweeney, T., Gath, V. and Crowe, M.A. (2011)

'Banding or Burdizzo castration and carprofen administration on peripheral leukocyte

inflammatory cytokine transcripts'. Research in Veterinary Science, 90:127-132.

Sweeney, T., Dillon, S., Fanning, J., Egan, J., O'Shea, C.J., Figat, S., Gutierrez, J.J.M.,

Mannion, C., Leonard, F. and O'Doherty, J.V. (2011) 'Evaluation of seaweed-derived

polysaccharides on indices of gastrointestinal fermentation and selected populations of

microbiota in newly weaned pigs challenged with Salmonella Typhimurium'. Animal

Feed Science and Technology, 165 (1-2):85-94.

O'Shea, C.J., Sweeney, T., Lynch, M.B., Gahan, D.A., Flynn, B.A. and O'Doherty, J.V.

(2011) 'The effect of introducing purified Beta-glucans to a wheat-based diet on total tract

digestibility and gaseous manure emissions from pigs as compared with consumption of a

beta-glucan-rich, barley-based diet'. Animal Feed Science and Technology, 165 (1-2):95-

104.

Bahar, B., O'Doherty, J.V. and Sweeney, T. (2011) 'A potential role of IL-6 in the chito-

oligosaccharide-mediated inhibition of adipogenesis'. British Journal of Nutrition, 106

(8):1142-1153.

O'Shea, C.J., Lynch, M.B., Sweeney, T., Gahan, D.A., Callan, J.J. and O'Doherty, J.V.

(2011) 'Comparison of a wheat-based diet supplemented with purified β-glucans, with an

oat-based diet on nutrient digestibility, nitrogen utilization, distal gastrointestinal tract

composition, and manure odor and ammonia emissions from finishing pigs'. Journal of

Animal Science, 89:438-447.

Aslan, O., Sweeney, T., Mullen, A.M. and Hamill, R.M. (2010) 'Regulatory

polymorphisms in the bovine Ankyrin 1 gene promoter are associated with tenderness and

intramuscular fat content'. BMC Genetics, 11:111.

Magee, D.A., Berkowicz, E.W., Sikora, K.M., Sweeney, T., Kenny, D.A., Kelly, A.K.,

Evans, R.D., Wickham, B.W., Bradley, D.G., Spillane, C. and MacHugh, D.E. (2010)

'High concordance of bovine single nucleotide polymorphism genotypes generated using

two independent genotyping strategies'. Animal Biotechnology, 21 (4):257-262.

Reardon, W., Mullen, A. M., Sweeney, T. and Hamill, R. M. (2010) 'Association of

polymorphisms in candidate genes with colour, water-holding capacity, and composition

traits in bovine M. longissimus and M. semimembranosus'. Meat Science, 86 (22):270-

275270.

Kelly, A.K., McGee, M., Crews, D.H., Sweeney, T., Boland, T.M. and Kenny, D.A.

(2010) 'Repeatability of feed efficiency, carcass ultrasound, feeding behavior, and blood

metabolic variables in finishing heifers divergently selected for residual feed intake'.

Journal of Animal Science, 88 (10):3214-3225.


maternal fish oil and seaweed extract supplementation on colostrum and milk

composition, humoral immune response, and performance of suckled piglets'. Journal of

Animal Science, 88 (99):2988-2997.

Professor Shane Ward


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Connolly, J., Holden, N.M., Connolly, J., Seaquist, J.W. and Ward, S.W. (2011)

'Detecting recent disturbance on Montane blanket bogs in the Wicklow Mountains,

Ireland using the MODIS enhanced vegetation index'. International Journal of Remote

Sensing, 32 (9):2377-2393.

Dr Paul Whyte

Caminiti, I.M., Palgan, I., Noci, F., Munoz, A., Whyte, P., Cronin, D.A., Morgan, D.J.

and Lyng, J.G. (2011) 'The effect of pulsed electric fields (PEF) in combination with high

intensity light pulses (HILP) on Escherichia coli inactivation and quality attributes in

apple juice'. Innovative Food Science and Emerging Technologies, 12:118-123.

Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Fanning, S. and Whyte, P.

(2011) 'Efficacy of high intensity pulsed light for the microbiological decontamination of

poultry, associated packaging and contact surfaces'. Foodborne Pathogens and Disease,

8:109-117.

Acke, E., Carroll, C., O’Leary, A., McGill, K., Kelly, L., Lawlor, A., Madden, R.H.,

Moran, L., Scates, P., McNamara, E., Moore, J.E., Jones, B.R., Fanning, S. and Whyte, P.

(2011) 'Genotypic characterisation and cluster analysis of Campylobacter jejuni isolates

from domestic pets, human clinical cases and retail food'. Irish Veterinary Journal, 64.

Munoz, A., Palgan, I., Noci, F., Morgan, D.J., Cronin, D.A., Whyte, P. and Lyng, J.G.

(2011) 'Combinations of high intensity light pulses and thermosonication for the

inactivation of Escherichia coli in orange juice'. Food Microbiology, 28:1200-1204.

O’Leary, A., Whyte, P., Madden, R.H., Cormican, M., Moore, J.E., McNamara, E.,

McGill, K., Kelly, L., Cowley, D., Moran, L., Scates, P., Collins, J.D. and Carroll, C.V.

(2011) 'Pulsed Field Gel Electrophoresis typing of human and retail foodstuff

campylobacters: an Irish perspective'. Food Microbiology, 28:426-433.

Haughton, P.N., Lyng, J., Cronin, D.A., Morgan, D.J., Fanning, S. and Whyte, P. (2011)

'Efficacy of UV light treatment for the microbiological decontamination of chicken,

associated packaging and contact surfaces'. Journal of Food Protection, 74:565-572.

Palgan, I., Caminiti, I.M., Munoz, A., Noci, F., Whyte, P., Morgan, D.J., Cronin, D.A.

and Lyng, J.G. (2011) 'Effectiveness of High Intensity Light Pulse (HILP) treatments for

the control of Escherichia coli and Listeria innocua in apple juice, orange juice and milk'.

Food Microbiology, 28:14-20.

Caminiti, I.M., Noci, F., Munoz, A., Whyte, P., Morgan, D.J., Cronin, D.A. and Lyng,

J.G. (2011) 'Impact of selected combinations of non-thermal processing technologies on

the quality of an apple and cranberry juice blend'. Food Chemistry, 124:1387-1392.

Beekhuis-Gibbon, L., O’Grady, L., More, S.J., Whyte, P. and Doherty, M.L. (2011) 'A

HACCP-based approach to mastitis control in dairy herds. Part 1: Development'. Irish

Veterinary Journal, 64 (2).

Beekhuis-Gibbon, L., Devitt, C., O’Grady, L., More, S.J., Whyte, P., Redmond, B. and

Doherty, M.L. (2011) 'A HACCP-based approach to mastitis control in dairy herds. Part

2: Implementation and evaluation'. Irish Veterinary Journal, 64 (7).


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Other Journals


O’Connell, J., Connolly, J. and Holden, N. M. (2011) 'Cross calibration of satellite based

multispectral data over peatlands' Biosystems Engineering Research Review.

Donnelly-Swift, R., Connolly, J. and Holden, N. M. (2011) 'Remote Sensing as a tool to

monitor white clover growth on farms' Biosystems Engineering Research Review.


McMahon, J.A. (2011) 'The European Union's Common Agricultural Policy in 2020' Irish

Environment.

Conference Publications

Dr Lorraine Brennan

Monahan F.J., Moloney, A.P., Osorio, M.T., Röhrle, F., Schmidt, O. and Brennan, L.

(2011) Authentication of grass-fed beef using bovine muscle, hair or urine Food Integrity

and Traceability Conference, Belfast, 33

Dr Enda Cummins

Curran, T., Doyle, C., Cummins, E., McDonnell, K. and Holden, N. (2011) Developing

Problem Based Learning Initiatives in Biosystems Engineering FACiLiTATE, Dublin,

Labite, H. and Cummins, E. (2011) Risk ranking of pesticides used in Irish agriculture The

21st Irish Environmental Researchers Colloquium, University College Cork, Ireland, 124

Pavlis, M. and Cummins, E. (2011) Assessment of groundwater vulnerability to pollution in

Ireland based on the COST-620 pan-European approach The 21st Irish Envoronmental

Researchers Colloquium, University College Cork, Ireland, 48

Harris, S. and Cummins, E. (2011) Risk ranking of antimicrobial residues in the

environment The 21st Irish Environmental Researchers Colloquium, University College

Cork, Ireland, 68

Tiwari, U. and Cummins, E. (2011) A farm-level model to predict quercetin levels during

the cultivation of onions Food Research Conference, University College Cork, Ireland, A37

Cushen, M., Cummins, E., Kerry, J., Morris, M., Cruz-Romero, M. and Burke A. (2011)

Nanoparticle migration and exposure assessment from food packaging Food Research

Conference, University College Cork, Ireland, A10

Tiwari B., O'Donnell, C., Tiwari, U., Cummins, E. and Cullen, P.J. (2010) Shelf-life

prediction of pasteurised orange juice. In: Starovicova M eds. EFFoST, Burlington Hotel,

Upper Leeson Street, Dublin 4, P154

Professor Séamus Fanning

Solomon, K., Fanning, S., Murray, S., Scott, L., McDermott, S., Drudy, D., Martin, A.,

O’Donoghue, C., Skally, M., Burns K., Fenelon, L., Fitzpatrick, F. and Kyne, L. (2010)






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sub-type diversity of clinical isolates of Clostridium difficile ribotypes 027 and 078 3rd

International Clostridium difficile Symposium,

Martin, A.J., Solomon, K., O’Donoghue, C., Fenelon, L., Fitzpatrick, F., Fanning, S.,

Murray, S., Chen, X., Kelly, C.P. and Kyne, L. (2010) Clinical outcomes and immune

response associated with Clostridium difficile ribotype 027 infection 3rd International

Clostridium difficile symposium,


Connolly, J. and Holden, N.M. (2011) Peatlands and drainage: using object oriented

methods to map peatland drains Conference of Irish Geographers, MIL, Limerick, Ireland,

Curran T., Doyle C., Cummins E., McDonnell K. and Holden N. (2011) Developing


O'Rourke, S.M. and Holden, N.M. (2011) The potential of visible-near infrared

hyperspectral imaging for determining soil organic matter and carbon fractions in forest top

soils European Geosciences Union General Assembly 2011, 3 - 8th April, Vienna, Austria,

O'Rourke, S.M. and Holden, N.M. (2011) The potential of near infrared lab based

hyperspectral imaging for the determination of geochemical properties in Irish soils The

15th International Conference on Near Infrared Spectroscopy, 13 - 20th May, Cape Town,

South Africa,

Connolly, J. and Holden, N.M. (2010) An Object Oriented approach for mapping peatland

disturbance RSPSoc 2010,

O’Connell, J., Holden, N.M. and Connolly, J. (2010) LAI in the quantification of

vegetation disturbance in Irish peatlands RSPSoc 2010,

Professor Cecily Kelleher

McGorrian, C., Frazer, K. and Kelleher, C. (on behalf of AITHS Study Team) (2010) Do

Irish Travellers Pose A Paradox In Terms Of Healthcare Access And Engagement? Faculty

of Public Health Medicine, Winter Scientific Meeting, Dublin,

Jackson, A.D., Daly, L., Kelleher, C., Fletcher, G., Harrington, M., Zhou, S. and

Fitzpatrick, P. (2010) Factors associated with poor pulmonary function in cystic fibrosis

adults in the Republic of Ireland: a cross-sectional analysis of registry data The Irish

Thoracic Society Annual Scientific Meeting, 2010, S464

Kelleher, C. (2010) Diet, Diabetes and Obesity - Research Progress of HRB UCC/UCD

Work Programme 3rd West of Ireland Integrated Diabetes Care Conference,

Dr James Lyng

Whyte, P., Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A. and Fanning, S. (2011)

Reducing Campylobacter in plant using novel physical interventions FIRM Relay

Dissemination conference: Strategies to control Campylobacter in poultry,

Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S. and Whyte, P. (2011) (ii)

Effect of a commercially available water acidification product (PWT) on the survival of

Campylobacter spp. in water and broiler cecal contents 16th International Workshop on

Campylobacter, Helicobacter and Related Organisms, Vancouver, Canada,

Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S. and Whyte, P. (2011) (i)




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Combination of ultrasonication or thermosonication and ultraviolet light for the

decontamination of raw chicken 16th International Workshop on Campylobacter,

Helicobacter and Related Organisms, Vancouver, Canada,

Dr Kevin McDonnell

Curran T., Doyle C., Cummins E., McDonnell K. and Holden N. (2011) Developing


Fagan, C.C., Everard, C.D. and McDonnell, K. (2011) Prediction of short rotation coppice

willow and Miscanthus composition using NIR spectroscopy European Biomass

Conference and Expo, Berlin, Germany,

Fagan, C.C., Everard, C.D. and McDonnell, K. (2011) Prediction of the calorific value of

bioenergy crops using visible-near-infrared spectroscopy CAC-2010: 12th International

Conference on Chemometrics in Analytical Chemistry, Antwerp, Belgium,

Farrelly, D., McDonnell, K. and Fagan, C.C. (2011) Farrelly, D., McDonnell, K., Fagan,

C.C. Effect of carbon dioxide concentration and temperature on the CO2 mitigation

potential of micro-algae ASABE Annual International Meeting 2011, Kentucky USA,

Everard, C.D., McDonnell, K. and Fagan, C.C. (2011) Determination of Calorific Values of

Biomass using Hyperspectral Imaging Techniques ASABE Annual International Meeting

2011, Kentucky USA,

Professor Frank Monahan

Luciano, G., Moloney, A.P., Priolo, A., Röhrle, F.T., Vasta, V., Biondi, L., Lόpez-Andrés,

P., Grasso, S. and Monahan, F.J. (2011) The balance between vitamin E and highly

peroxidizable fatty acids in muscle and the oxidative stability of beef from cattle grown on

forage- or concentrate-based rations 57th International Congress of Meat Science and

Technology, Ghent, Belgium,

Harrison, S., Schmidt, O., Monahan, F.J., Bahar, B. and Moloney, A.P. (2011) Using

animal diet switch experiments to improve meat traceability Food Integrity and

Traceability Conference, Belfast, 37

Monahan, F.J., Moloney, A.P., Osorio, M.T., Röhrle, F., Schmidt, O. and Brennan, L.

(2011) Authentication of grass-fed beef using bovine muscle, hair or urine Food Integrity

and Traceability Conference, Belfast, 33

Contini, C., Katsikogianni, M.G., O’Neill, F.T., O’Sullivan, M., Dowling, D.P. and

Monahan, F.J. (2011) Development of active packaging containing natural antioxidants

11th International Congress on Engineering and Food, Athens, Greece, 1001 - 1002

Professor Colm O'Donnell

O'Donnell, C.P. (2011) Benefits and Challenges of PAT in the Dairy Industry IFPAC

Annual Meeting, Jan. 17-21, 2011 Baltimore, MD, USA,

Professor Dolores O'Riordan

O'Neill, G., Jacquier, J.C., O'Sullivan, M. and O'Riordan, E.D. (2011) (2011) Encapsulation

of amino acids and peptides in cold set whey protein microspheres 2011 EFFoST Annual

Meeting Berlin, , 09-NOV-11 - 11-NOV-11,





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Sherry, F.A., Ellis, A., Jacquier, J.C., O'Sullivan, M., O'Riordan, E.D. and Fanning, S.

(2010) Effect of prebiotic strains on pathogens in companion animals EFFoST Annual

Meeting 2010, Dublin,

Fox, A., Ellis, A., O'Riordan, E.D., O'Sullivan, M. and Jacquier J.C. (2010) Copper

encapsulation for trace mineral fortification of food 2011 EFFoST Annual Meeting 10/11,

McKernan, A., Ellis, A., Jacquier, J.C., O'Sullivan, M. and O'Riordan, E.D. (2010)

Microencapsulation of Feed Enzymes for Increased Thermal Stability 2010 EFFoST

Annual Meeting, Dublin,

Mr Mick O'Sullivan

Contini, C., Katsikogianni, M.G., O’Neill, F.T., O’Sullivan, M., Dowling, D.P. and

Monahan, F.J. (2011) Development of active packaging containing natural antioxidants

11th International Congress on Engineering and Food, Athens, 1001 - 1002

Sherry, F.A., Ellis, A., Jacquier, J.C., O'Sullivan, M., O'Riordan, E.D. and Fanning, S.

(2010) Effect of prebiotic strains on pathogens in companion animals EFFoST Annual

Meeting 2010, Dublin,

Fox, A., Ellis, A., O'Riordan, E.D., O'Sullivan, M. and Jacquier J.C. (2010) Copper

encapsulation for trace mineral fortification of food 2011 EFFoST Annual Meeting 10/11,

McKernan, A., Ellis, A., Jacquier, J.C., O'Sullivan, M. and O'Riordan, E.D. (2010)

Microencapsulation of Feed Enzymes for Increased Thermal Stability 2010 EFFoST

Annual Meeting, Dublin,


Da-Wen Sun (2011) Using Hyperspectral Imaging Technique to Evaluate and Inspect

Quality and Safety of Agricultural and Food Products CIGR International Symposium 2011

on Sustainable Bioproduction, Water, Energy and Food (WEF 2011) (Keynote speech),

Tokyo, Japan,

Barbin, D.F., Elmasry, G., Da-Wen Sun and Allen, P. (2011) Prediction of Pork Drip Loss

Using NIR Hyperspectral Imaging and Partial Least Squares Regression 6th International

CIGR Technical Symposium on Towards a Sustainable Food Chain, Nantes, France,

ElMasry, G., Da-Wen Sun and Allen, P. (2011) Determination of Drip Loss in Beef by NIR

Hyperspectral Imaging and Multivariate Analysis 11th International Congress on

Engineering and Food (ICEF 11), Athens, Greece,

Wei, X., Wu, D., Huang, L., He, Y. and Da-Wen Sun (2011) Bruise Detection of Intact

Kiwifruit Using Hyperspectral Imaging Technique 6th International CIGR Technical

Symposium on Towards a Sustainable Food Chain, Nantes, France,

Iqbal, A., Valous N.A., and Da-Wen Sun (2011) Classification of Lacunarity Datasets

Computed from Slice Images of Three Pork Ham Qualities, Using Kernel PCA and a

Multilayer Perceptron 6th International CIGR Technical Symposium on Towards a

Sustainable Food Chain, Nantes, France,

Valous, N.A., Drakakis, K. and Da-Wen Sun (2011) Long-range Correlations in Pork Ham

Surface Images Using First-order Detrended Fluctuation Analysis 11th International

Congress on Engineering and Food (ICEF 11), Athens, Greece,

Kiani, H., Zhang, Z., Delgado, A. and Da-Wen Sun (2011) Ultrasound Assisted Nucleation



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of Water During Freezing 11th International Congress on Engineering and Food (ICEF

11), Athens, Greece,

Da-Wen Sun (2011) Developments of Novel Freezing Technologies for Improving Frozen

Food Quality Functional Food and Health International Symposium (Keynote speech),

Nanjing, China,

Da-Wen Sun (2011) Hyperspectral Imaging Technology: A Non-Destructive Tool for Food

Quality and Safety Evaluation and Inspection 11th International Congress on Engineering

and Food (ICEF 11) (Keynote speech), Athens, Greece,

ElMasry, G., Da-Wen Sun and Allen, P. (2011) NIR Hyperspectral Imaging for Non-

destructive Determination of Beef Quality Attributes 6th International CIGR Technical

Symposium on Towards a Sustainable Food Chain, Nantes, France,

Barbin, D.F., ElMasry, G., Da-Wen Sun and Allen, P. (2011) Detection of Pork Freshness

Using NIR Hyperspectral Imaging 11th International Congress on Engineering and Food

(ICEF 11), Athens, Greece,

Feng, C., Zhang, Z., Drummond, L. and Da-Wen Sun, (2011) Cooling of Cooked Carrot

Cubes of Different Sizes with Three Cooling Methods 40th Annual UCC Food Research

Conference, Cork, Ireland,

Wu, D., Cao, F., Chen, X., He, Y. and Da-Wen Sun (2011) Rapid Quantitative

Determination of EPA and DHA in Fish Oil by ATR-FTIR with Hybrid Chemometrics 6th

International CIGR Technical Symposium on Towards a Sustainable Food Chain, Nantes,

France,

Kamruzzaman, M., Elmasry, G., Da-Wen Sun and Allen, P. (2011) Predicting Some

Quality Attributes of Lamb Muscles by NIR Hyperspectral Imaging 6th International CIGR

Technical Symposium on Towards a Sustainable Food Chain, Nantes, France,

Da-Wen Sun (2011) Non-Destructive Quality and Safety Evaluation and Inspection for

Agricultural and Food Products by Hyperspectral Imaging Technology 2011 International

Conference on Agricultural Engineering New Technology (ICAE2011) (Plenary lecture),

Zibo, China,

Morsy, N., Aleixos, N., Prats-Montalbán, J., Blasco, J., ElMasry, G., Da-Wen Sun and

Allen, P. (2011) Classification of Chicken Ham Qualities by Computer Vision and Imaging

Spectroscopy 6th International CIGR Technical Symposium on Towards a Sustainable

Food Chain, Nantes, France,

Morsy, N., Blasco, J., Alixos, N., ElMasry, G., Da-Wen Sun and Allen, P. (2010) Potential

of Imaging Spectroscopy for Classification of Meat Products IASIM-10, Dublin, Ireland,

Da-Wen Sun (2010) Non-Destructive Food Quality and Safety Evaluation and Inspection

by Hyperspectral Imaging Technology 4th International Conference on Computer and

Computing Technologies in Agriculture (Keynote speech), Nanchang, China,

Barbina, D.F., ElMasry, G., Da-Wen Sun and Allen, P. (2010) Classification of Pork

Quality Grades by Hyperspectral Imaging Technique IASIM-10, Dublin, Ireland,

ElMasry, G., Da-Wen Sun and Allen, P. (2010) Prediction of Water-Holding Capacity in

Beef by NIR Hyperspectral Imaging IASIM-10, Dublin, Ireland,

Kamruzzaman, M., ElMasry, G., Da-Wen Sun and Allen, P. (2010) Applicability of NIR

Hyperspectral Imaging in Classification of Lamb Muscles IASIM-10, Dublin, Ireland,

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Dr Paul Whyte

Whyte, P., Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A. and Fanning, S. (2011)

Reducing Campylobacter in plant using novel physical interventions FIRM Relay

Dissemination conference: Strategies to control Campylobacter in poultry,

Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S. and Whyte, P. (2011) (ii)

Effect of a commercially available water acidification product (PWT) on the survival of

Campylobacter spp. in water and broiler cecal contents 16th International Workshop on

Campylobacter, Helicobacter and Related Organisms, Vancouver, Canada,

Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. (2011) (i)

Combination of ultrasonication or thermosonication and ultraviolet light for the

decontamination of raw chicken 16th International Workshop on Campylobacter,

Helicobacter and Related Organisms, Vancouver, Canada,

Published Reports

Professor Cecily Kelleher

Abdalla, Safa; Cronin, Fran; Daly, Leslie (Co-PI); Drummond, Anne; Fitzpatrick, Patricia;

Frazier, Kate; Hamid, Noor Aman; Kelleher, Cecily C. (PI); Kelly, C; Kilroe, Jean; Lotya,

Juzer; McGorrian, Catherine; Moore, Ronnie G. (Co-PI); Murnane, Sinéad; Nic Chárthaigh,

Róisín; O'Mahony, Deirdre; O'Shea, Bríd (Admin support); Quirke, Brigid; Staines, Anthony

(Co-PI); Staines, David; Sweeney, Mary Rose; Turner, Jill; Ward, Aileen; Whelan, Jane

(2010); All Ireland Traveller Health Study Technical Report 3. (214 pages). Department of

Health and Children, Dublin.




Róisín; O’Mahony Deirdre; O’Shea, Bríd (Admin support); Quirke, Brigid; Staines, Anthony

(Co-PI); Staines, David; Sweeney, Mary Rose; Turner, Jill; Ward, Aileen; Whelan, Jane;

(2010) All Ireland Traveller Health Study Technical Report 2. Department of Health and

Children, Dublin.






(2010) All Ireland Traveller Health Study Technical Report 2. (198 pages). Dept of Health

and Children, Dublin.







of 28


(2010) All Ireland Traveller Health Study Technical Report 1. (260 pages). Dept of Health

and Children, Dublin.


Ciara Brown and Colin Scott (2010) Regulatory Capacity and Networked Governance. UCD

Geary Institute, Dublin.

Ciara Brown and Colin Scott (2010) Regulation in Ireland: History, Structure, Style and

Reform. UCD Geary Institute, Dublin.

Dr Paul Whyte

Food Safety Authority of Ireland (2011) Recommendations for a practical control

programme for Campylobacter in the poultry production and slaughter chain. Food Safety

Authority of Ireland, Dublin.

FSAI (2011) The prevention of verocytotoxigenic Escherichia coli (VTEC) infection: A

shared responsibility. 2nd Edition. FSAI, Dublin.

Other Publications


Niamh Hardiman, Muiris MacCarthaigh and Colin Scott (2010) Irish State Administration

Database. Dublin: Software.

Dr Paul Whyte

Whyte, P., Haughton, P., Lyng and Cronin, D. (2011) Shedding light on Campylobacter in

chicken. Dublin: Newsletter.





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