idigbio: addressing a bio big data challenge. a. matsunaga, et al. 2013 ieee e-science. 2013: 78-87...
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iDigBio:Addressing a BIO Big Data
Challenge
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A. Matsunaga, et al. 2013 IEEE e-Science. 2013: 78-87
How iDigBio is Different
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The Data Landscape is Changing
https://www.idigbio.org/content/collaborating-institutions
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Research Use & Training
Cloud-BasedData Store
CommunityBuilding
Tools, APIs & Workflows
Outreach/Education
Data Capture/Annotation
Best Practices
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Community Building is Key
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A. Matsunaga, et al. 2013 IEEE e-Science. 2013: 78-87
CI Design: Integrate, Leverage, Re-Use
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now 2050
now 2050
Flatspike sedge (Abildgaardia ovata)
Scrub plum (Prunus geniculata)
C. Germain-Aubrey et al. - 1600 spp., 511,000 GPS
iDigBio Data Lead to Discovery
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Accelerating Digitization of Biodiversity Research Specimens through Online Public Participation
Aiming Up: Natural History Collections as Emerging Resources for Innovative Undergraduate Education in Biology
A Computational- and Storage-Cloud for Integration of Biodiversity Collections
Five task clusters that enable efficient and effective digitization of biological collections
Augmenting optical character recognition (OCR) for improved digitization: Strategies to access scientific data in natural history collections
A workflow for text extraction and parsing for herbarium specimens
Integrating specimen databases and revisionary systematics
Reaching Consensus in Crowdsourced Transcription of Biocollections Information
Semantics in Support of Biodiversity Knowledge Discovery
A Specimen-based View of the World: Using the Biological Collections Ontology to Model Biodiversity Collections
And to Best Practices
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NSF Plays an Active Role
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Bridging Investments: Trees + Specimens + Tools
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http://www.dataone.org
Community Input: Now and Future
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A Model for Community-Driven CI