iai accepted manuscript posted online 8 september 2015 infect
TRANSCRIPT
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Bioluminescent Imaging Reveals Novel Patterns of Colonization and Invasion in Systemic Escherichia 1
coli K1 Experimental Infection in the Neonatal Rat 2
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Luci A. Witcomb,a James W. Collins,b Alex J. McCarthy,a Gadi Frankel,b Peter W. Taylora# 5
University College London School of Pharmacy, 29-39 Brunswick Square, London, WC1N 1AX, UKa; 6
MRC Centre for Molecular Bacteriology and Infection, Imperial College London, London SW7 2AZ, 7
UKb 8
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Running Head: Colonization and invasion in E. coli infection 15
#Address correspondence to Peter Taylor, [email protected] 16
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IAI Accepted Manuscript Posted Online 8 September 2015Infect. Immun. doi:10.1128/IAI.00953-15Copyright © 2015, American Society for Microbiology. All Rights Reserved.
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ABSTRACT 22
Key features of Escherichia coli K1-mediated neonatal sepsis and meningitis, such as a strong age-23
dependency and development along the gut-mesentery-blood-brain course of infection, can be 24
replicated in the newborn rat. We examined temporal and spatial aspects of E. coli K1 infection 25
following initiation of gastrointestinal colonization in two-day-old (P2) rats after oral administration 26
of E. coli K1 strain A192PP and a virulent bioluminescent derivative, E. coli A192PP-lux2. A 27
combination of bacterial enumeration in the major organs, 2D bioluminescence imaging and 3D 28
diffuse light imaging tomography with integrated μCT indicated multiple sites of colonization within 29
the alimentary canal; these included the tongue, esophagus and stomach in addition to the small 30
intestine and colon. After invasion of the blood compartment, the bacteria entered the central 31
nervous system, with restricted colonization of the brain, and also invaded the major organs in line 32
with increases in the severity of symptoms of infection. Both keratinized and non-keratinized 33
surfaces of esophagi were colonized to a considerably greater extent in susceptible P2 neonates 34
compared to corresponding tissues from infection-resistant nine-day-old rat pups; the bacteria 35
appeared to damage and penetrate the non-keratinized esophageal epithelium of infection-36
susceptible P2 animals, suggesting the esophagus may represent a portal of entry for E. coli K1 into 37
the systemic circulation. Thus, multimodality imaging of experimental systemic infections in real 38
time indicate complex dynamic patterns of colonization and dissemination that provide new insights 39
into E. coli K1 infection of the neonatal rat. 40
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INTRODUCTION 48
Escherichia coli strains expressing the K1 capsule, a homopolymer of α-2,8-linked polysialic acid, are 49
a leading cause of early- and late-onset neonatal sepsis and neonatal bacterial meningitis (1, 2, 3). 50
Predisposition to these severe, often life-threatening infections is critically dependent on the vertical 51
transmission of the causative agent from mother to infant at, or soon after birth, and infection is 52
associated with following gastrointestinal (GI) colonization of the neonate (4, 5, 6); the neonatal GI 53
tract is considered sterile at birth but acquires an increasingly complex microbiota during the first 54
year of life (7). Persisting high rates of morbidity and mortality (2, 8) and the continuing emergence 55
of drug-resistant isolates (9, 10) emphasize the urgent need for new approaches to the prevention 56
and treatment of these infections. A better understanding of the etiology and pathogenesis of 57
neonatal systemic infections could provide the basis for a new generation of therapeutics and 58
prophylactics, but these infections are medical emergencies and opportunities for interventions that 59
would provide such insights are severely limited. Consequently, much of the current knowledge of 60
the underlying processes that lead to overt neonatal disease has been obtained from experimental 61
infections in small animals such as mice, rats and rabbits. 62
In some animal models, infection is initiated by parenteral administration of bacteria, 63
bypassing natural processes of colonization and dissemination and creating an artificial pathogenesis 64
scenario. Replication of the natural site of GI colonization of E. coli K1 neonatal infection in the rat, a 65
superior vehicle for such studies compared to the mouse (11), was initially employed by Moxon and 66
co-workers (12) and subsequently extended and refined (11, 13, 14). This model, initiated by gastric 67
intubation (12, 13) or feeding (11, 14) of the inoculum, produces a strongly age-dependent systemic 68
infection much as in the natural human host. For the first few days of life, newborn K1-colonized rat 69
pups are prone to develop lethal infection due to the capacity of the colonizing bacteria to 70
translocate from the lumen of the GI tract to the blood compartment (14, 15) after passage through 71
the mesenteric lymphatic system (14), from where they may establish infection in multiple organs, 72
including the brain (16). Invasion of brain tissue elicits a strong local inflammatory response induced 73
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by pro-inflammatory cytokines IL-1β, IL-6 and TNF-α (17) in similar fashion to bacterial neonatal 74
meningitis in humans (18, 19). Within a week, the pups become refractory to systemic infection, 75
even in the presence of persistent GI tract colonization (20, 21). 76
There are, however, a number of issues relating to the pathogenesis of E. coli K1 systemic 77
infection that require resolution: the basis of the strong age dependency is poorly understood, the 78
site of translocation from GI lumen to blood circulation is unknown, the mode and pattern of 79
dissemination of the circulating pathogen to peripheral organs is unclarified and there are conflicting 80
views on the route of entry into the brain, whether across the blood-brain barrier (BBB) (22, 23), the 81
blood meningeal barrier, or through the choroid plexus (1, 16), or both. Recent developments in 82
four-dimensional (4D) imaging methodologies provide an opportunity to investigate complex 83
experimental infections as real-time dynamic processes in whole animals (24, 25). In this study, we 84
shed further light on the pathogenesis of E. coli infection in neonatal rats and identify a potential 85
new site of colonization and portal of entry into the systemic circulation using a bioluminescent E. 86
coli K1 derivative combined with 2D bioluminescent imaging (2DBLI) and 3D diffuse light imaging 87
tomography with integrated µCT (DLIT- µCT). We have used this data to generate 4D movies of the 88
infection cycle to further inform on temporal aspects of disease progression. 89
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MATERIALS AND METHODS 91
Bacteria and plasmids 92
The properties of the bacteria and plasmid used in this study are detailed in Table 1. E. coli O18:K1 93
strain A192PP was derived from septicemia isolate E. coli A192 (29) by two rounds of passage 94
through neonatal rat pups, with bacterial recovery from the blood (15). The presence of K1 capsule 95
was confirmed with K1-specific bacteriophage K1E (30). Bacteria were grown in either Luria-Bertani 96
(LB) medium, M9 minimal medium (M9 salts supplemented with 1 % glucose and 0.01 M sodium 97
citrate) or Mueller Hinton (MH) broth and incubated at 37oC with agitation in an orbital incubator at 98
200 orbits min and with kanamycin (50 μg/ml) and ampicillin (100 μg/ml) as required. 99
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Generation and characterization of E. coli A192PP-lux 100
E. coli A192PP was engineered to express the bioluminescence phenotype by introduction of the lux 101
operon through mini-Tn5 mutagenesis. The method used a suicide vector that carried an 102
unpromoted lux operon (luxCDABE) from the terrestrial bacterium Photorhabdus luminescens on a 103
disarmed mini-Tn5 transposon (26). The pUTmini-Tn5luxCDABEKm2 vector was maintained in donor 104
strain E. coli S17-1 ƛ pir (27) and transferred to A192PP by conjugation, essentially as previously 105
described (28), with the exception that conjugants were selected on M9 minimal medium containing 106
kanamycin and 0.01 M sodium citrate to prevent ƛ phage lysogeny of the E. coli recipient strain (31). 107
Bioluminescent conjugants were identified with the BioRad ChemiDocTM XRS+ Imaging System (no 108
illumination, no filter, auto-exposure) and K1-positive bioluminescent colonies subjected to two 109
rounds of subculture on MH agar containing kanamycin prior to storage under glycerol at -80oC. 110
Growth kinetics (OD600) and bioluminescence of conjugants were determined in MH broth; 111
photon emission during the growth cycle (expressed as relative luminescence units) was monitored 112
with a PerkinElmer LS-55 fluorescence spectrometer. The stability of the mini-Tn5 element within 113
conjugants was determined by subculture every 24 h in MH broth in the presence and absence of 114
kanamycin; subcultures were enumerated by viability counting and bioluminescent colonies 115
identified with the ChemiDocTM XRS+ Imaging System. To determine luxCDABEKm2 insertion sites in 116
E. coli A912PP derivatives, strains were sequenced with the Illumina MiSeq platform as described 117
(32) and compared with the E. coli A192PP sequence (European Nucleotide Archive: 118
http://www.ebi.ac.uk/ena/ ; accession number PRJEB9141). The conjugant E. coli A192PP-lux2 was 119
selected for further investigation. The E. coli A192 and A192PP-lux2 genomes were assembled using 120
Velvet assembler (33) and aligned with the luxCDABE operon within the Tn-lux sequence. To confirm 121
the insertion site of the Tn-lux element, A192PP-lux2 paired sequence reads were mapped onto the 122
A192PP assembled genome. The insertion site was then confirmed by PCR using primers for the 123
amplification of A192PP-lux2-traL (forward primer 5’-TATATCGTCGGCCATGAATCC-3’; reverse primer 124
5’-AACCTCACTCCCTTTTTGCT-3’) and primers for amplification of the luxC-traL junction (forward 125
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primer 5’-CGTATCCTCCAAGCCTGAATT-3’; reverse primer 5’-TGAAGCGGTAGAAGTTGCCAA-3’), 126
producing fragments of 597 bp and 419 bp, respectively. PCR reactions (50 μl) comprised 25 μl 127
Promega Master Mix, 1 μl (10 μM) of each primer and 1 μl genomic DNA as template. Amplification 128
was carried out under the following conditions: 1 cycle at 95oC for 5 min, 35 cycles of 95oC for 1 min, 129
60oC for 1 min and 72oC for 2 min with a final extension of one cycle of 72oC for 10 min. 130
Experimental systemic infection of neonatal rats 131
Animal experiments were approved by the Ethical Committee of the UCL School of Pharmacy and 132
the UK Home Office (HO) and were conducted under HO Project Licence PPL 70/7773. The 133
procedure has been described in detail (11). In brief, two-day-old (P2) or nine-day-old (P9) Wistar rat 134
pups (Harlan UK) were fed 20 µl of mid-logarithmic phase E. coli (2-6 X 106 CFU) from an Eppendorf 135
micropipette to effect gastrointestinal (GI) colonization. No local trauma is observed as a 136
consequence of this procedure. All members of a litter, usually 12 pups, were treated as a single test 137
or control group and fed E. coli culture in identical fashion at the same time interval. GI tract 138
colonization was determined by culture of perianal swabs on MacConkey agar; bacteremia was 139
detected by MacConkey agar culture of blood taken post mortem. Disease progression was 140
determined by daily evaluation of symptoms of systemic infection and scored on a scale of rising 141
severity from 0 to 3 (11). After sacrifice, samples from the esophagus, stomach, small intestine (SI), 142
colon, blood, mesenteric lymphatic system, liver, lung, heart, kidney and spleen were excised 143
aseptically (11). Organs were washed extensively in PBS to ensure minimal contamination with 144
perfused blood. Bacteria were quantified in homogenized tissues by serial dilution culture on 145
MacConkey agar and the presence of the K1 capsule confirmed as required with bacteriophage K1E. 146
Samples from experiments involving E. coli A192PP-lux2 were cultured in the presence of 50 μg/ml 147
kanamycin. 148
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2D bioluminescence imaging (2DBLI) and 3D diffuse light imaging tomography with integrated μCT 151
(DLIT-μCT) 152
2DBLI was performed on tissues harvested from P2 and P9 rat pups colonised by A192PP-lux2; 153
tissues were collected 24, 48, and 72 h after feeding of the colonizing bacteria and the severity of 154
infection recorded. Tissues were washed in sterile PBS, placed in sterile petri dishes on black card 155
and pierced with sterile 25G needles for aeration (34). Bioluminescence was measured within 156
standardised regions of interest (ROI) and data expressed as flux (photons/s), adjusted as follows to 157
ensure all measurements had positive value: log10 [flux [p/s]+1]. Tissues from non-colonised pups 158
were used for bioluminescent background subtraction. Quantitative imaging was performed using 159
an IVIS Lumina series III (PerkinElmer). 160
For whole animal studies, both the IVIS Lumina series III (for 2DBLI) and the IVIS SpectrumCT 161
(PerkinElmer; DLIT-μCT) were employed. In DLIT-μCT experiments, the auto settings in the Living 162
Image software 4.3.1 wizard and auto-exposure settings specific for imaging bacterial luciferases 163
(maximum exposure 300 s, target count minimum 10,000) were used (25). Anesthesia (5 % 164
isofluorane, followed by maintenance under 2.5 % isofluorane) on the pre-warmed imaging platform 165
was used in both 2DBLI and DLIT-μCT experiments. Symptoms of infection were recorded 166
immediately prior to the collection of images and the pups culled for ex vivo tissue analysis; animals 167
were not subjected to repeated anesthesia. 3D animations were created using living image, as 168
previously described (25), and compiled into a movie using iMovie software (version 10.0.5). Non-169
colonised animals were used for bioluminescent background subtraction. To correlate flux 170
(photons/s) with CFU, serial dilutions in PBS from 16 h cultures of E. coli A192PP-lux were prepared 171
in 96-well black plates and wells highlighted as ROIs prior to imaging in the IVIS Lumina series III and 172
IVIS SpectrumCT. Flux within ROIs was measured and CFUs from each well determined 173
retrospectively by plating on to MH agar with kanamycin. 174
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Histology and microscopy 177
Esophageal tissues were collected and fixed in 10% neutral buffered formalin, embedded in paraffin, 178
processed, 5 μm sections obtained, mounted onto slides and stained with hematoxylin and eosin 179
(H&E). Unstained sections were prepared for immunohistochemistry: they were dewaxed in 180
HistoClear and examined for E. coli O18 lipopolysaccharide antigen as previously described (16, 35) 181
and mounted in VectaShield Mounting Medium containing 4’,6’-diamidino-2-phenylindole (DAPI) 182
stain (H-1200). Samples for scanning electron microscopy (SEM) were processed and examined as 183
previously described (36) using a JEOL JSM-5300 scanning electron microscope. 184
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RESULTS 186
Generation and characterization of E. coli A192PP-lux 187
Thirty-one bioluminescent derivatives of E. coli A192PP were obtained by mini-Tn5 mutagenesis. 188
One, designated E. coli A192PP-lux2, expressed the K1 capsule, grew in MH broth (Fig. 1A) and LB 189
minimal medium (Fig. S1) to an extent comparable to the parental A192PP strain and produced a 190
strong bioluminescent signal over the course of the growth cycle that correlated with CFU (Fig. 1B & 191
1C), indicative of constitutive expression of the lux operon (37). The strength of the bioluminescent 192
signal from A192PP-lux2 exceeded that from C. rodentium ICC180 and was maintained for seven 193
days in the absence of kanamycin (data not shown), indicative of stable genomic maintenance of the 194
lux operon. Whole genome sequencing of E. coli A192PP-lux2 revealed that the Tn5-lux element 195
inserted into traL, encoding an F-pilus assembly protein (38, 39); disruption of traL and the presence 196
of the luxC-traL junction in A192PP-lux2 was confirmed by PCR (Fig. S2); pili were not evident in SEM 197
images of either A192PP or A192PP-lux2 (Fig. S1B). The capacity of E. coli A192PP-lux2 to elicit lethal 198
infection after GI colonization in P2 and P9 neonatal rats was determined. The bioluminescent 199
derivative colonized the GI tract of P2 and P9 pups to the same extent as the parental E. coli A192PP, 200
with stable colonization occurring within 24-48 h of feeding of the bacteria (Fig. 1D); 79.17% (19/24) 201
of P2 animals developed bacteremia over the seven-day observation period and around 20% 202
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survived, whereas all receiving the parent strain were bacteremic (Fig. 1E), with no survivors (Fig. 203
1F). No P9 pups receiving either E. coli A192PP or A192PP-lux2 succumbed to bacteremia or lethal 204
infection in spite of efficient GI colonization. Thus, stable insertion of the lux transposon and 205
kanamycin resistance cassette into traL had only a minor impact on virulence; E. coli A192PP-lux2 206
and was therefore employed for all imaging experiments. 207
Distribution of E. coli A192PP-lux2 in colonized P2 and P9 rat pups 208
The available evidence indicates that, after ingestion, E. coli K1 follows the gut-mesentery-blood-CSF 209
course of infection in the neonatal rat (13, 14) but the bacteria become widely disseminated as the 210
infection progresses (16). To determine if carriage of the lux transposon and kanamycin resistance 211
genes altered the in vivo distribution of E. coli A192PP and to signpost the design of whole animal 212
and organ imaging experiments, we determined the organ tropism and organ load of E. coli A192PP 213
and A192PP-lux2 in P2 and P9 neonatal rats after initiation of colonization. A population of 214
colonizing E. coli A192PP was evident in the small intestine 24 h (the initial time point for viability 215
determination) after initiation of colonization at P2 and varied little in quantitative terms over the 216
first 72 h of colonization; there were no significant differences in numbers of colonizing bacteria 217
between E. coli A192PP and A192PP-lux2 during this period (Fig. 2A). Small numbers of bacteria 218
were present in the mesentery after 24 h (Fig. 2B) and began to appear in the blood circulation at 219
the same time point (Fig. 2C). E. coli K1 were recovered from brain tissue in a variable proportion of 220
infected P2 animals and the numbers encountered were low (Fig. 2D). There were again no 221
significant differences between E. coli A192PP and A192PP-lux2 at any given time point. Other 222
regions of the GI tract (stomach, colon) were also stably colonized by both bioluminescent strain and 223
parent strain to a similar extent, although a noticeable but insignificant decrease in A192PP-lux2 224
load present in the stomach at 24 h after initiation of colonization was observed (Fig. S3). Low to 225
moderate numbers of E. coli A192PP and A192PP-lux2 were cultured from liver, lung, heart, kidney, 226
spleen and pancreas; no significant differences in the size of the bioburden between the two strains 227
were evident when they were compared by time after initiation of colonization or by severity of 228
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symptoms of infection (Figs. S3 & S4). The bacterial load of both strains in the major organs 229
increased as the health status of the animals declined (Fig. S4). We conclude that the introduction of 230
bioluminescence- and kanamycin-associated genes into E. coli A192PP has little, if any, impact on 231
organ tropism and tissue bioburden in this widely-disseminated infection of susceptible P2 neonatal 232
rats. With resistant P9 pups, E. coli A192PP and A192PP-lux2 were recovered from the stomach, 233
small intestine and colon in numbers comparable to those found in P2 animals; only very low 234
numbers were found in the mesentery, and other tissues were free of E. coli K1 (data not shown). 235
Patterns of E. coli A192PP-lux2 infection determined by bioluminescence imaging 236
2DBLI of live P2 rats revealed a significant increase in total bioluminescence between 24 h and 48 h 237
after feeding of E. coli A192PP-lux2 (P< 0.05), coincident with the onset of signs of infection. 238
Representative images are shown in Fig. 3. Colonizing bacteria were not uniformly distributed along 239
the small intestine. Typically, there was rapid dissemination of the pathogen from the site of 240
colonization between these two time points and an apparent reduction in both flux and degree of 241
dissemination at 72 h. However, in individual animals the infection progresses at different rates (16) 242
with a proportion succumbing to infection within three days after seeding of E. coli K1, and survivors 243
at 72 h are likely to be animals in which infection progressed at a relatively low rate compared to 244
non-survivors. The apparent peak of infection at 48 h was reflected in photon emission from excised 245
major organs with the exception of the GI tract tissues, indicative of stable GI colonization (Fig. 3). 246
We therefore examined the data relative to the severity of symptoms of infection (Fig. 4). 247
In live P2 animals the E. coli K1 burden increased significantly as symptoms of infection 248
became evident, indicating that although the total burden increased with time it correlated more 249
closely with the severity of infection. The degree of colonization of the stomach, small intestine and 250
mesentery increased with disease severity and invasion of the central nervous system occurred only 251
in animals displaying severe symptoms of infection. Association of E. coli K1 with liver, spleen, 252
pancreas, heart and kidney were similarly associated with the late stages of infection. In contrast, 253
the distribution of E. coli A192PP-lux2 in colonized P9 pups was restricted to the GI tract (Fig. S5). 254
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The bioburden in live P9 animals did not increase significantly between 24 h and72 h and few 255
bacteria were visualized in the mesentery. Niches rich in colonizing bacteria were evident in the 256
small intestine, colon and mesentery in both P2 and P9 pups. Overall, the distribution of E. coli K1 257
determined by 2DBLI was consistent with data obtained by viability determination (Figs. 2 & S4). 258
DLIT-μCT was used to investigate the relationship between the development of symptoms of 259
disease and the whole-animal distribution of E. coli A192PP-lux2 in P2 animals over a 72 h period 260
following initiation of colonization (Video file 1). As anesthesia modified the progression of disease 261
and increased the risk of rejection by the mother, longitudinal monitoring of individual pups was not 262
performed. As determined earlier in the study, the rate of disease progression differed significantly 263
between individual animals and clearer representations of disease development were obtained 264
when comparisons were made on the basis of severity of symptoms rather than on time from 265
colonization. Multiple organ involvement can be seen in cases of severe infection (score of three or 266
more) and it is noteworthy that infection of the CNS was restricted to the surface of the brain, 267
lending support to the view that the choroid plexus rather than the brain microvascular endothelium 268
represents the portal of entry into the CNS in experimental E. coli K1 meningitis. The authenticity of 269
the DLIT-μCT reconstruction was confirmed by 2DBLI of the corresponding pups and their organs 270
(Fig. S6). DLIT-μCT revealed that the initial bolus of E. coli K1 entered the colon within 3 h of oral 271
application of the inoculum, seeding the entirety of the alimentary tract including the oral cavity, 272
esophagus, stomach and small intestine (Video file 2; Fig. S7). Frequent colonisation of the oral 273
cavity was observed, which presented as photon emission from the head region (Video file 3), and 274
was evident over the entire 72 h observation period. Stable oral cavity colonization was confirmed 275
by 2DBLI of excised elements of this region and revealed an intense colonization of tongue tissue 276
(Fig. 5). During later stages of disease progression, photon emission from multiple lymph nodes in 277
the face, neck, back and joints was observed (Video file 4; Fig. 6), demonstrating extensive 278
dissemination of E. coli K1 within the lymphatic system. 279
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Age-dependent colonization and invasion of the esophagus 281
2DBLI indicated that the esophagus could represent a novel site for entry and dissemination in 282
systemic E. coli K1 experimental infection (Figs. S7 & 7A). Photon emission from the head region did 283
not originate from the trachea (data not shown). Determination of photon emission by the 284
bioluminescent derivative (Fig. 7B) and CFU of E. coli A192PP and A192PP-lux2 (Fig. 7C) in excised 285
esophagi showed P2 rats to be significantly more susceptible to colonization at this site than P9 286
animals. No significant quantitative differences in colonization capacity between the two strains 287
were apparent (Fig. 7C) and no difference between E. coli A192PP and A192PP-lux2 with respect to 288
severity of symptoms was found (data not shown). H&E staining of the esophagus revealed the 289
presence of a keratinised epithelium at P9; this layer was absent or only partially developed in the 290
esophagus of susceptible P2 neonatal rats (Fig. 8A), began to appear 2-3 days post-partum (Fig. S8) 291
and developed progressively during the early neonatal period. Esophageal sections from rats 292
colonized with E. coli A192PP at P2 were probed for the presence of the O18 antigen; bacterial 293
attachment to keratinized and non-keratinized esophageal surfaces was evident at 24, 48 and 72 h 294
following bacterial feeding (Fig. 8B); 018 antigen was not detected in tissues from non-colonized 295
animals. Bacteria were also observed attached to sloughing keratin strands present in the lumen of 296
the esophagus. Additionally, at 48 h peripheral invasion and damage to regions of non-keratinized 297
esophageal epithelium by E. coli K1 was evident (Fig. 8B) and further evidence of invasion of non-298
keratinized regions was also observed by SEM (Fig. 8C). 299
300
DISCUSSION 301
The isolation of E. coli K1 from the cerebrospinal fluid of sick newborn infants frequently coincides 302
with the presence of the bacteria in the feces of both infant and mother (4, 6, 40), providing a strong 303
indication that the maternal GI tract represents the primary reservoir of infection for these neonatal 304
pathogens, which are associated with the infant gut prior to systemic invasion. Oral administration 305
of E. coli K1 to susceptible neonatal rats clearly shows that colonization of the GI tract precedes 306
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invasion (13, 14, 15). The site of translocation and the molecular processes involved have not been 307
defined with any precision although evidence is emerging that colonization of the small intestine is 308
essential for systemic infection (21). In the current study, DLIT-μCT imaging showed that the 309
colonizing E. coli K1 bolus reached the colon within three hours of administration and 2DBLI revealed 310
regions of intense colonization in both the small intestine and colon of P2 and P9 pups and, 311
unexpectedly, that bacteria were seeded along the entire length of the alimentary tract. Thus, the 312
oral cavity, esophagus and stomach of P2 animals were usually heavily colonized and may represent 313
additional reservoirs of infection in this model. Small numbers of E. coli K1 were found in the 314
mesenteric lymphatic system at an early stage of the infection cycle, supporting evidence (14) that 315
invasion of the blood circulation occurs by this route. The presence of E. coli K1 bacteria in some of 316
the major organs, particularly in pups with symptoms of systemic infection, may represent end-stage 317
invasion as immune defenses are compromised. However, with highly perfused organs the bacterial 318
viability counts are very likely to include bacteria present in blood as well as in tissue; the organs of 319
newborn rats are fragile and will not withstand ex vivo perfusion for blood removal (PW Taylor; 320
unpublished observation). 321
Colonization of the GI tract by E. coli K1 at P2 dysregulates the maturation of the mucus 322
barrier which is poorly formed in newborn pups; mucosal barrier function at this age is insufficient to 323
prevent translocation of E. coli K1 from gut lumen to blood circulation (21). An integral barrier has 324
formed by P9 (21), preventing systemic invasion and accounting for the restricted distribution of the 325
bacteria following colonization of P9 animals observed in the current study. We also found an 326
unexpected age-dependent, stable colonization of the esophagus and obtained evidence that, in P2 327
pups, E. coli K1 may invade non-keratinized esophageal tissue, raising the possibility that the 328
esophagus represents an additional locus of translocation to the blood. Thus, photon emission from 329
this site was significantly increased in susceptible P2 rats compared to resistant P9 animals over the 330
three days following initiation of colonization and the strong age-dependency confirmed by 331
enumeration of viable E. coli K1 within esophageal tissue. 332
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H&E staining revealed the age-dependent development of a keratinized esophageal layer, 333
appearing as early as two days postpartum; age-related keratinization has also been documented in 334
the mouse but appears to proceed more slowly in comparison to the rat as determined in the 335
current study (41). Esophageal keratinization provides protection against the consumption of coarse 336
foods (42), although the human esophageal epithelium is not normally keratinized to any extent (43, 337
44) and, like the rodent esophagus, does not develop a viscoelastic protective mucus barrier (45). E. 338
coli K1 attached to all regions of the P2 esophagus, including keratinized and non-keratinized 339
surfaces. As binding is independent of the keratin layer, the presence of keratin cannot account for 340
differences in esophageal binding between P2 and P9 pups. However, invading E. coli K1 were found 341
in non-keratinised regions of the P2 esophagus, suggesting that the incomplete keratinization of this 342
site predisposes the underlying epithelium to invasion and may enable the bacteria to persist; this 343
contention is supported by SEM imaging of P2 esophageal tissue. Full-term human neonates exhibit 344
reduced esophageal motility and luminal clearance compared to adults which is further decreased in 345
preterm neonates (46, 47, 48), suggesting that the neonatal esophagus may be vulnerable to 346
colonization and invasion by neuropathogens in the human host. Thus, reduced esophageal 347
peristalsis, an exposed epithelial layer lacking keratin and a mucosal barrier may increase the risk of 348
pathogen attachment, overgrowth and invasion at this site. 349
We noted colonization of the oral cavity, in particular the tongue. There have been few 350
studies of sites of E. coli K1 colonization upstream of the GI tract but Guerina and colleagues (49) 351
recorded colonization of the oral cavity in virtually all neonatal rats examined. In another study, 352
colonization of the oropharynx and bloodstream invasion occurred in neonatal rats fed E. coli K1; 353
pilus-deficient mutants were unable to maintain colonization of this site but continued to colonize 354
the GI tract and cause bacteremia (50), suggesting that oropharyngeal colonization was not essential 355
for development of sepsis and meningitis. In support, we found that the Tn5-lux construct inserted 356
into traL of E. coli A912PP; this gene is involved in F-pilus assembly (38) but the virulence of the 357
transposant E. coli A192PP-lux2 was to a great extent retained. Further studies should be 358
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implemented to determine if colonization of sites other than the GI tract predispose towards 359
systemic infection and whether colonization of the distal tongue can be used for diagnostic 360
swabbing of neonates to detect K1 colonization prior to the onset of sepsis. Although a strong 361
correlation between systemic E. coli K1 infection and GI tract colonization has been frequently 362
reported in clinical studies of neonatal infection (3, 4, 6), there are indications that in some cases of 363
bacterial meningitis, aspiration of the infecting dose into the lungs and other regions of the 364
respiratory tract may provide opportunities for an alternative portal of entry into the systemic 365
circulation (51). This is unlikely to be a significant factor in the development of infection in the 366
neonatal rat model, as E. coli A192PP appears in the lung at the later time points and only in pups 367
displaying severe symptoms of infection. 368
Soon after initiation of colonization, susceptible pups develop bacteremia before 369
succumbing to overwhelming infection involving the major organs. We found E. coli K1 in the major 370
groups of lymph nodes, suggesting that disseminated infection may arise due to failure of the 371
lymphatic system to control localized foci of bacteria. E. coli K1 is strongly associated with sepsis and 372
meningitis (1, 2, 3) and we found significant associations between severity of infection and recovery 373
of viable bacteria from brain tissue. In a previous study (16), we visualized E. coli K1 in brain sections 374
using a modified Gram stain and found bacteria associated only with the surfaces of this organ. The 375
current study lends further support to this pattern of distribution: DLIT-μCT imaging (video 1) 376
indicated that E. coli A192PP-lux2 cells were restricted to superficial layers on the surface of the 377
brain, much as in the human condition (52) and supports previous observations (16) that E. coli K1 378
gains access to the CNS through the choroid plexus, a component of the blood-CSF barrier. Transit 379
from the blood circulation through this epithelial barrier to the CSF would present the invading 380
bacteria with the opportunity to adhere to the most superficial layer of the brain, the 381
leptomeninges, but restrict access to cortical tissue. However, it is widely accepted that E. coli K1 382
invade the CNS by traversal of the endothelium (BBB) (23, 53), even though the evidence supporting 383
this route of entry is modest (22). As the mammalian brain accounts for only 2% of body mass yet 384
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receives 20% of the cardiac output, it is a highly vascularized organ; the human brain contains an 385
estimated one hundred billion vessels, one for each neuron (54). If circulating neuropathogens 386
penetrated the BBB to any extent at multiple site sites within this vascular network, one would 387
expect to encounter the bacteria throughout the brain in both naturally-occurring and experimental 388
E. coli K1 meningitis but this is not the case. The choroid plexus provides a much lower resistance to 389
transport into the CNS than the BBB (55) and is strong candidate for portal of entry. Resolution of 390
the important issues of colonization and tissue penetration may open up new avenues for resolving 391
lethal infections of the CNS. 392
393
ACKNOWLEDGMENTS 394
This study was supported by project grant GN2075 from Action Medical Research. Further support 395
was provided by the National Institute for Health Research University College London Hospitals 396
Biomedical Research Centre. We thank Dr Richard Stabler, London School of Hygiene and Tropical 397
Medicine, for generating the sequence reads. We thank Prof Thilo M. Fuchs, Technische Universitat 398
Munchen, for kindly providing the Tn-lux sequence. 399
400
Accession numbers 401
Nucleotide sequence of the A192PP-lux2 genome has been deposited in the European Nucleotide 402
Archive (http://www.ebi.ac.uk/ena/; accession number PRJEB9940). 403
404
405
406
407
408
409
410
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553
554
555
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558
559
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562
563
564
565
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Table 1. Citrobacter rodentium and Escherichia coli strains and plasmid used in this study 567
Description Ref
Bacteria C. rodentium ICC180
Luminescent derivative of C. rodentium, nalR kmR
28
E. coli S17-1 ƛ pir Pir + maintenance and donor strain, ampR
kmR
27
E. coli A192PP
Serially passaged (A192) strain
15
E. coli A192PP-lux2 Plasmid pUTmini-Tn5luxCDABEKm2
Luminescent A192PP derivative, kmR
Suicide vector, with unpromoted luxCDABE transposon, ampR kmR
This study 26
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
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LEGENDS 584
585
FIG. 1 Characterization of E. coli K1 bioluminescent derivative A192PP-lux2. (A), Growth of E. coli 586
A192PP and A192PP-lux2 in MH broth at 37°C (200 orbits min); ±SD, n=5. (B), Photon emission by E. 587
coli A192PP-lux2 in relative luminescence units correlates with growth phase and shows 588
constitutive expression of the lux operon. (C), Relationship of photon emission to CFU (Spearman’s 589
rank test (two-tailed), n=3; P< 0.001). Colonization (D), accumulated bacteremia (E), and survival (F) 590
of E. coli A192PP and A192PP-lux2 in P2 and P9 neonatal rat pups. 591
592
FIG. 2 Colonization of the small intestine (A), and dissemination to the mesentery (B), blood (C) and 593
brain (D) of E. coli A192PP and A192PP-lux2 after oral application of bacteria (2-6 X 106 CFU) to P2 594
neonatal rat pups. Fewer data points at later time intervals reflect decreases in survival over time. 595
596
FIG. 3 Progression of systemic infection after oral application of E. coli A192PP-lux2 (2-6 X 106 CFU) 597
to P2 neonatal rat pups determined by 2D bioluminescence imaging (2DBLI) of live rats and excised 598
organs. Bioluminescence values were determined as log10 [flux [p/s]+1]; p, number of photons. 599
Images were collected from live animals at the time points indicated; they were then sacrificed, 600
organs collected and images obtained immediately. Representative images of whole animals and 601
excised organs are shown. Fewer data points at later time intervals reflect decreases in survival 602
over time. Data represent means ±SD (one-way ANOVA with Tukey’s multiple comparison test; *, P< 603
0.05). 604
605
FIG. 4 Relationship between the severity of disease and distribution of E. coli A192PP-lux2 in live 606
rats and excised organs after oral application of bacteria (2-6 X 106 CFU) to P2 neonatal rat pups 607
determined by 2D bioluminescence imaging (2DBLI). Bioluminescence values were determined as 608
log10 [flux [p/s]+1]; p, number of photons. Images were collected from live animals at the time 609
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points indicated; they were then sacrificed, organs collected and images obtained immediately. 610
Representative images of whole animals and excised organs are shown. Fewer data points at later 611
time intervals reflect decreases in survival over time. The disease severity of each animal was 612
monitored 4 - 5 times daily using a seven-point scoring system (11) based on color of the skin, 613
agility (righting reflex), response to gentle pressure on the abdomen, visibility of stomach/milk line, 614
temperature, weight gain and behavior when placed in cage. Animals were culled immediately 615
when three or more of symptoms became evident and the animal recorded as dead. Data represent 616
means ±SD (one-way ANOVA with Tukey’s multiple comparison test; *, P< 0.05; **, P< 0.01; ***, P< 617
0.001). 618
619
FIG. 5 Colonization of the oral cavity of P2 neonatal rats by E. coli A192PP-lux2. (A), 2DBLI 72 h after 620
feeding of bacteria (2-6 X 106 CFU) shows photon emission from the head region. (B), 2DBLI and 621
DLIT-μCT reveals intense oral cavity colonization with foci associated with tongue tissue. Images 622
were collected from live animals; they were then sacrificed, organs collected and images obtained 623
immediately. Representative images of whole animals and excised organs are shown. 624
625
FIG. 6 Dissemination of E. coli A192PP-lux2 to regional lymph nodes in live animals and excised 626
nodes 72 h after oral application of 2-6 X 106 CFU bacteria, revealed by 2DBLI and DLIT-μCT. Arrows 627
indicate excised tissues. Images were collected from live animals; they were then sacrificed, organs 628
collected and images obtained immediately. Representative images of whole animals and excised 629
organs are shown; different animals were used to generate each image. 630
631
FIG. 7 Age-dependent colonization of the esophagus by E. coli A192PP and A192PP-lux2. (A), 2DBLI 632
images of colonized P2 rats, showing oral cavity and esophageal involvement. (B), Photon emission 633
from esophageal tract tissue excised from colonized P2 and P9 rat pups; ***, P< 0.001 (Student’s t-634
test). (C), Enumeration of colonizing bacteria from esophageal samples of P2 and P9 rat pups; **, P< 635
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0.01; ***, P< 0.001 (Student’s t-test). 636
637
FIG. 8 Imaging of the age-dependency of esophageal colonization. (A), Age-dependent 638
keratinization of the esophagus in P2 and P9 neonatal rats. Scale bars: 25 μm. (B), 639
Immunohistochemical detection of E. coli O18 antigen in esophageal samples excised from two P2 640
animals 48 h after feeding of E. coli A192PP, damage and peripheral invasion of non-keratinised 641
sites can be seen. Scale bars: 25 μm. The O18 antigen was expressed by both strains to a 642
comparable extent. (C), SEM images of esophagi from pups fed E. coli A192PP at P2; images 643
obtained 24 h later reveal evidence of peripheral epithelial invasion. 644
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