i. general - authors.library.caltech.edu i., and c. luchinat. ... chem. rev. 84 (1984), 137-203....
TRANSCRIPT
![Page 1: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/1.jpg)
I. General
Beveridge, T. J., and R. J. Doyle, eds. Metal Ions and Bacteria. New York: Wiley, 1989.Ehrlich, H. L. Geomicrobiology. 2d ed. New York: Dekker, 1990.Eichhorn, G., and L. Marzilli, series eds. Advances in Inorganic Biochemistry, Vol. 1. New
York: Elsevier, 1979.Frieden, E., series ed. Biochemistry of the Elements, Vol. I. New York: Plenum, 1984.Glusker, J., et al. Metalloproteins: Structural aspects. Adv. Protein Chem. 42 (1991).Hausinger, R. P. Mechanisms of metal ion incorporation into metalloproteins. BioFactors 2 (1990),
179-184.Hay, R. W., series ed. Perspectives in Bioinorganic Chemistry, Vol. l. Greenwich, CT: JAI
Press, 1991.Hughes, M. N., and R. K. Poole. Metals and Microorganisms. New York: Chapman and Hall,
1989.Ibers, J. A., and R. H. Holm. Modeling coordination sites in metallobiomolecules. Science 290
(1980), 223-235.Irgolic, K. J., and A. E. Martell, eds. Environmental Inorganic Chemistry. Deerfield Beach, FL:
VCH, 1985.Legg, J. I. Substitution-inert metal ions as probes of biological function. Coord. Chem. Rev. 25
(1978), 103-132.Leigh, G. J., ed. The Evolution of Metalloenzymes, Metalloproteins, and Related Materials.
London: Symposium Press, 1977.Lippard, S. J., ed. Progress in Inorganic Chemistry, Vol. 38: Bioinorganic Chemistry. New
York: 1990.Loehr, T. M., ed. Iron Carriers and Iron Proteins. New York: VCH, 1989.Lontie, R., ed. Copper Proteins and Copper Enzymes, Vols. 1-3. Boca Raton, FL: CRC Press,
1984.Meares, C. F., and T. G. Wensel. Metal chelates as probes of biological systems. Ace. Chem.
Res. 17 (1984),202-209.Que, L., Jr. Metal Clusters in Proteins. American Chemical Society Symposium Series no. 372.
Washington, D.C.: American Chemical Society, 1988.Schneider, W. Iron hydrolysis and the biochemistry of iron: The interplay of hydroxide and
biogenic ligands. Chimia 42 (1988), 9-20.Sigel, H., and R. B. Martin. Coordinating properties of the amide bond: Stability and structure
of metal ion complexes of peptides and related ligands. Chem. Rev. 82 (1982), 385-426. 585
![Page 2: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/2.jpg)
586 SUGGESTED READINGS
Sigel, H., and A. Sigel, series eds. Metal Ions in Biological Systems, Vol. 1. New York: Dekker,1974.
Spiro, T., ed. Copper Proteins. New York: Wiley, 1981.Thayer, J. S. Organometallic Compounds and Living Organisms. New York: Academic Press,
1984.Williams, R. J. P. Missing information in bio-inorganic chemistry. Coord. Chon. Rev. 79 (1987),
175-193.--~. Structural aspects of metal toxicity. In J. O. Nriagu, ed., Changing Metal Cycles and
Human Health. Dahlem Konferenzen, 1984; Berlin: Springer-Verlag, 251-263.Wood, J. M. Biological cycles for elements in the environment. Naturwissenschaften 52 (1975),
357-364.
II. Techniques
Armstrong, F. A. Voltammetry of metal centres in proteins. Persp. Bioinorg. Chem. 1 (1991),141-182.
Bertini, I., and C. Luchinat. NMR ofParamagnetic Molecules in Biological Systems. Menlo Park,CA: Benjamin/Cummings, 1986.
Cheesman, M. R., C. Greenwood, and A. J. Thomson. Magnetic circular dichroism of hemoproteins. Adv. Inorg. Chem. 35 (1991),201-255.
Darnall, D. W., and R. G. Wilkins, eds. Methods for Determining Metal Ion Environments inProteins: Structure and Function of Meta!loproteins. New York: Elsevier, 1980.
Day, E. P., et al. Squid measurement of metalloprotein magnetization. Biophys. J. 52 (1987),837-853.
Dooley, D. M., and J. H. Dawson. Bioinorganic applications of magnetic circular dichroismspectroscopy: Copper, rare-earth ions, cobalt, and non-heme iron systems. Coord. Chem.Rev. 60 (1984), 1-66.
Fairhurst, S. A., and L. H. Sutcliffe. The application of spectroscopy to the study of iron-containing biological molecules. Prog. Biophys. Mol. Biol. 34 (1978), 1-79.
Lever, A. B. P. Inorganic Electronic Spectroscopy. 2d ed. New York: Elsevier, 1984.Palmer, G. The electron paramagnetic resonance of metalloproteins. Biochem. Soc. Trans. 13
(1985), 548-560.Scott, R. A. Measurement of metal-ligand distance by EXAFS. Methods Enzymol. 177 (1985),
414-459.Scott, R. A., and M. K. Eidsness. The use of x-ray absorption spectroscopy for detection of
metal-metal interactions: Application to copper-containing enzymes. Comments Inorg. Chem.7 (1988),235-267.
Spiro, T. G., ed. Biological Applications of Raman Spectroscopy, Vols. 1-3. New York: Wiley,1988.
Swartz, H. M., and S. M. Swartz. Biochemical and biophysical applications of electron-spinresonance. Methods Biochem. Anal. 29 (1983), 207-323.
Wilkins, R. G. Kinetics and Mechanism of Reactions of Transition-Metal Complexes, Secondedition. New York: VCH, 1991.
---. Rapid-reaction techniques and bioinorganic reaction mechanisms. Adv. Inorg. Bioinorg.Mech. 2 (1983), 139-185.
Wuthrich, K. NMR of Proteins and Nucleic Acids. New York: Wiley, 1986.Sigel, H., and A. Sigel, eds. Applications of nuclear magnetic resonance to paramagnetic species.
Metal Ions Biol. Syst. 21 (1986).Sigel, H., and A. Sigel, eds. ENDOR, EPR, and electron spin echo for probing coordination
spheres. Metal Ions Biol. Syst. 22 (1987).
![Page 3: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/3.jpg)
SUGGESTED READINGS
III. For Chapter 1
Baker, E. N., S. V. Rumball, and B. F. Anderson. Transferrins: Insights into structure andfunction from studies on lactoferrin. Trends Biochem. Sci. 12 (1987), 350-353.
Cousins, R. J. Absorption, transport, and hepatic metabolism of copper and zinc: Special refer-ence to metallothionein and ceruloplasmin. Physiological Rev. 65 (1985), 238-309.
Crichton, R. R. Inorganic Biochemistry of Iron Metabolism. New York, E. Horwood, 1991.Hamer,D. H. Metallothionein. Annu. Rev. Biochem. 55 (1986),913-951.Harrison, P. M., et al. Probing structure-function relations in ferritin and bacterioferritin. Adv.
Inorg. Chem. 36 (1991), 449-487.Kagi, J. H. R., and A. Schaffer. Biochemistry of metallothionein. Biochemistry 27 (1988), 8509
8515.Lindenbaum, S., J. H. Rhytting, and L. A. Sternson. Ionophores. Prog. Macrocyclic Chem. 1
(1979),219-254.Lowenstam, H. A., and S. Weiner. On Biomineralization. New York: Oxford University Press,
1989.Otvos, J. D., D. H. Petering, and C. F. Shaw. Structure-reactivity relationships of metallothi
onein, a unique metal-binding protein. Comments Inorg. Chem. 9 (1989), 1-35.Ponka, P., H. M. Schulman, and R. C. Woodworth, eds. Iron Transport and Storage. Boca
Raton, FL: CRC Press, 1990.Theil, E. C. The ferritin family of iron-storage proteins. Adv. Enzymol. 63 (1990), 421-449.Winkelmann, G., D. van der Helm, and J. B. Neilands, eds. Iron Transport in Microbes, Plants,
and Animals. Weinheim, FRG: VCH, 1987.
IV. For Chapter 2
Bertini, 1., and C. Luchinat. An insight on the active site of zinc enzymes through metal substitution. Metal Ions Biol. Syst. 15 (1982), 101-156.
Christianson, D. W., and W. N. Lipscomb. Carboxypeptidase A. Ace. Chon. Res. 22 (1989),62-69.
Dolphin, D., ed. B12 , Vols. 1 and 2. New York: Wiley, 1982.Fife, T. H. Metal-ion-catalyzed ester and amide hydrolysis. Persp. Bioinorg. Chem. 1 (1991),
43-93.Matthews, B. W. Structural basis of the action of thermolysin and related zinc peptidases. Acc.
Chem. Res. 21, 333-340 (1988).Spiro, T. G., ed. Zinc Enzymes. New York: Wiley, 1983.Vallee, B. L. Zinc coordination, function, and structure of zinc enzymes and other proteins.
Biochemistry 29 (1990),5649-5659.
V. For Chapter 3
Cavaggoni, A. Calcium regulation in cell biology. Bioscience Reports 9 (1989), 421-436.Christakos, S., C. Gabrielides, and W. B. Rhoten. Functional considerations of vitamin-D depen
dent calcium binding proteins. Endocrine Rev. 10 (1989), 3-26.Haizmann, C. W., and W. Hunziker. Intracellular calcium-binding proteins. In F. Bonner, ed.
Intracellular Calcium Regulation. New York: Wiley-Liss (1990), 211-248.Mann, S., J. Webb, and R. J. P. Williams, eds. Biomineralization. Weinheim, FRG: VCH, 1990.Strynadka, N. C. J., and M. N. G. James. Crystal structures of calcium-binding proteins. Annu.
Rev. Biochem. 58 (1989), 951-998.Tsien, R. Y., and M. Poenie. Fluorescence ratio imaging: a new window into intracellular ionic
signaling. Trends Biochem. Sci. 11 (1986), 450-455.
587
![Page 4: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/4.jpg)
588 SUGGESTED READINGS
VI. For Chapter 4
Buchler, J. W. Hemoglobin-An inspiration for research in coordination chemistry. Angew. Chem.Inti. Ed. Eng. 17 (1978), 407-423.
Dolphin, D., ed. The Porphyrins. New York: Academic Press, 1978.Ellerton, H. D., N. F. Ellerton, and H. A. Robinson. Hemocyanin-A current perspective. Prog.
Biophys. Mol. Bioi. 41 (1983), 143-248.Jameson, G. B., and J. A. Ibers. On carbon monoxide and dioxygen binding by iron(Il) por
phyrinato systems. Comments lnorg. Chem. 2 (1983), 97-126.Jones, R. D., D. A. Summerville, and F. Basolo. Synthetic oxygen carriers related to biological
systems. Chon. Rev. 79 (1979), 139-179.Karlin, K. D. Binding and activation of molecular oxygen by copper complexes. Prog. Inorg.
Chem. 35 (1987),219-327.Lamy, J., and J. Lamy, eds. Invertebrate Oxygen-Binding Proteins. New York: Dekker, 1981.Lavallee, D. K. Kinetics and mechanisms of metalloporphyrin reactions. Coord. Chem. Rev. 61
(1985),55-96.Morgan, B., and D. Dolphin. Synthesis and structure of biomimetic porphyrins. Struct. Bond.
64. Berlin and Heidelberg: Springer-Verlag, 1987.Niederhoffer, E. c., J. H. Timmons, and A. E. Martell. Thennodynamics of oxygen binding in
natural and synthetic dioxygen complexes. Chem. Rev. 84 (1984), 137-203.Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc. Chem.
Res. 20 (1987), 309-321.Scheidt, W. R., and C. A. Reed. Spin-state/stereochemical relationships in iron porphyrins: Im
plications for the hemoproteins. Chem. Rev. 81 (1981), 543-555.Suslick, K., and T. J. Reinert. The synthetic analogs of Orbinding heme proteins. J. Chon.
Educ. 62 (1985),974--983.Woods, E. J. The oxygen transport and storage proteins of invertebrates. Essays Biochem. 16
(1980), 1-47.
VII. For Chapter 5
Babcock, G. T. and M. Wikstom. Oxygen activation and the conservation of energy in cellrespiration. Nature 356 (1992),301-309.
Bruice, T. C. Reactions of hydroperoxides with metallotetraphenylporphyrins in aqueous solutions. Acc. Chon. Res. 24 (1991),243-249.
Cadens, E. Biochemistry of oxygen toxicity. Annu. Rev. Biochem. 58 (1989), 79-110.Chan, S. I., S. N. Witt, and D. F. Blair. The dioxygen chemistry of cytochrome c oxidase.
Chemica Scripta 28A (1988), 51-56.Dix, T. A., and S. J. Benkovic. Mechanism of oxygen activation by pteridine-dependent mono
oxygenases. Acc. Chon. Res. 21 (1988), 101-107.Everse, J., K. E. Everse, and M. B. Grisham, eds. PeroxidasCc~ in chemistry and biology. 2
Vols. Boca Raton, FL: CRC Press, 1991.Fridovich, I. Superoxide dismutases: An adaptation to a paramagnetic gas. J. Bioi. Chem. 264
(1989),7761-7764.Jefford, C. W., and P. A. Cadby. Molecular mechanisms of enzyme-catalyzed dioxygenation.
Prog. Chem. Nat. Prods. 40 (1981), 191-265.Kaufman, S. Aromatic amino-acid hydroxylases. The Enzymes 18 (1987), 217-282.Malmstrom, B. G. Enzymology of oxygen. Annu. Rev. Biochem. 51 (1982), 21-59.Malmstrom, B. G. Cytochrome and oxidase as a redox-linked proton pump. Chem. Rev. 90
(1990), 1247-1260.Mansuy, D., P. Battioni, and J.-P. Battioni. Chemical model systems for drug-metabolizing
cytochrome-P-450-dependent monooxygenases. Eur. J. Biochem. 184 (1989),267-285.Miller, D. M., G. R. Buettner, and S. D. Aust. Transition metals as catalysts of autoxidation
reactions. Free Radical Bioi. Med. 8 (1990),95-108.
![Page 5: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/5.jpg)
SUGGESTED READINGS 589
Ortiz de MontelJano, P. R., ed. Cytochrome P-450: Structure, Mechanism, and Biochemistry.New York: Plenum, ]986.
Sawyer, D. T. Oxygen Chemistry. Oxford: Oxford Univ. Press, 1991.Stadtman, E. R. Metal ion-catalyzed oxidation of proteins: Biochemical mechanism and biological
consequences. Free Radical Bioi. Med. 9 (1990), 315-325.Stewart, L. c., and J. P. Klinman. Dopamine beta-hydroxylase of adrenal chromaffin granules:
Structure and function. Annu. Rev. Biochem. 57 (1988),551-592.Vliegenthart, J. F. G., and G. A. Veldink. Lipoxygenases. Free Radicals in Bioi. 5 (1982),29
M.
VIII. For Chapter 6
Amesz, J., ed. Photosynthesis. Amsterdam: Elsevier, 1987.Bertrand, P. ed. Long-range electron transfer in biology. Struct. Bond. 75 (1991), 1-47.Bowler, B. E., A. L. Raphael, and H. B. Gray. Long-range electron transfer in donor (spacer)
acceptor molecules and proteins. In S. J. Lippard, ed. Progress in Inorganic Chemistry, vol.38: Bioinorganic Chemistry (New York: Wiley, 1990), pp. 258-322.
DeVault, D. Quantum-mechanical tunnelling in biological systems. 2d ed. Cambridge: CambridgeUniv. Press, 1984.
Gray, H. B., and B. G. Malmstrom. Long-range electron transfer in multi site metalloproteins.Biochemistry 28 (1989), 7499-7505.
Gust, D., and T. A. Moore. Photosynthetic Model Systems. Topics Curro Chem. 159 (1991),103-151.
Marcus, R. A., and N. Sutin. Electron transfers in chemistry and biology. Biochim. Biophys.Acta 811 (1985), 265-322.
Moser, C. c., et al. Nature of biological electron transfer. Nature 355 (1992), 796.Onuchic, J. N., et al. Pathway analysis of protein electron-transfer reactions. Annu. Rev. Biophys.
Biomol. Struct. 21 (1992), 349-377.Robinson, J. N., and D. J. Colc-Hamilton. Electron transfer across vesicle bilayers. Chem. Soc.
Rev. 20 (1991),49-94.Scott, R. A., A. G. Mauk, and H. B. Gray. Experimental approaches to studying biological
electron transfer. J. Chem. Educ. 52 (1985), 932-938.Sigel, H., and A. Sigel, eds. Electron transfer reactions in metal!oproteins. Metal Ions Bioi. Syst.
27 (1991).Sutin, N., and B. S. Brunschwig. Some aspects of electron transfer in biological systems. In
M. K. Johnson et al., eds., Electron Transfer in Biology and the Solid State (Washington,D.c.: American Chemical Society, 1990), pp. 65-88.
Wherland, S., and H. B. Gray. Electron-transfer mechanisms employed by metalloproteins. InA. W. Addison et al., cds., Biological Aspects o/Inorganic Chemistry (New York: Wiley,1977),289-368.
Winkler, J. R., and H. B. Gray. Electron transfer in ruthenium-modified proteins. Chem. Rev.92 (1992), 369-379.
Wuttke, D. S., et al. Electron-tunneling pathways in cytochrome C. Science 256 (1992), 10071009.
IX. For Chapter 7
Bruschi, M., and F. Guerlesquin. Structure, function, and evolution of bacterial ferredoxins.FEMS Microbial. Rev. 54 (1988), 155-176.
Burgess, B. K. The iron-molybdenum cofactor of nitrogenase. Chem. Rev. 90 (1990), 13771406.
Coucouvanis, D. Use of preassembled Fe/S and Fe/Mo/S clusters in the stepwise synthesis ofpotential analogues for the Fe/Mo/S site in nitrogenase. Acc. Chem. Res. 24 (1991), 1-8.
![Page 6: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/6.jpg)
590 SUGGESTED READINGS
Holm, R. H. Identification of active sites in iron-sulfur proteins. In A. W. Addison et al., Biological Aspects of Inorganic Chemistry (New York: Wiley-Interscience, 1977),71-11 .
Holm, R. H. Synthetic approaches to the active sitcs of iron-sulfur proteins. Ace. Chem. Res. 10(1977), 427--434.
Holm, R. H., S. Ciurli, and J. A. Weigel. Subsite-specific structures and reactions in native andsynthetic [4Fe-4S] cubane-type clusters. Prog. Inorg. Chem. 38 (1990), 1-74.
Odom, J. M., and H. D. Peck, Jr. Hydrogenase, electron-transfer proteins, and energy couplingin the sulfate-reducing bacteria desulfovibrio. Annu. Rev. Microbiol. 38 (1984),551-592.
Postgate, J. R. The Fundamentals oj" Nitrogen Fixation. Cambridge: Cambridge Univ. Press,1982.
Spiro, T., ed. Iron-Sulfur Proteins. New York: Wiley, 1982.Sweeney, W. V., and J. C. Rabinowitz. Proteins containing 4Fc-4S clusters: An overview. Annu.
Rev. Biochem. 49 (1980), 139-161.
X. For Chapter 8
Barton, J. K. Recognizing DNA. Chem. Eng. News, Sept. 26, 1988, pp. 30-41.McGall, G. H., and J. Stubbe. Mechanistic studies of bleomycin-mediated DNA e1eavage using
isotope labeling. Nucl. Acids Mol. Bioi. 2 (1989), 85-104.Sigel, H., and A. Sigel, eds. Interrelations among metal ions, enzymes, and gene expression.
Metal Ions Bioi. Syst. 25 (1989).Sigman, D. S., and A. Spassky. DNAse activity of I, lO-phenanthroline-copper ion. Nucl. Acids
Mol. Bioi. 3 (1989), 13-27.Silver, S., R. A. Laddaga, and T. K. Misra. Plasmid-determined resistance to mctal ions. In
R. K. Poole and G. N. Gadd, eds., Metal-microbe interactions (Oxford: Oxford Univ. Press,1989), pp. 49-63.
Tullius, T. D., ed. Metal-DNA Chemistry. American Chemical Society Symposium Series no.402. Washington, D.C.: American Chemical Society, 1989.
XI. For Chapter 9
Blackburn, G. N., and M. J. Gait, ed. Nucleic Acids in Chemistry and Biology. Oxford: IRLPress, 1990.
Farrell, N. Transition-Metal Complexes as Drugs and Chemotherapeutic Agents. Dordrecht, TheNetherlands: Kluwer, 1989.
Hacker, M. P., E. B. DoupJe, and 1. H. Krakoff. Platinum Coordination Complexes in CancerChemotherapy. Boston: Martinus Nijhoff, 1984.
Lippard, S. J., ed. Platinum, Gold, and Other Metal Chemotherapeutic Agents. American Chemical Society Symposium Series no. 209. Washington, D.C.: American Chemical Society,1983.
Nicolini, M., cd. Platinum and Other Metal Coordination Compounds in Cancer Chemotherapy.Boston: Martinus Nijhoff, 1988.
Nicolini, M., G. Bandoli, and U. Mazzi, eds. Technetium Chemistry and Nuclear Medicine. NewYork: Raven Press, 1986.
Saenger, W. Principles of Nucleic-Acid Structure. Heidelberg: Springer-Verlag, 1984.Saenger, W., and U. Hinneman, eds. Protein-Nucleic Acid Interaction. Boca Raton, FL: CRC
Press, 1989.Tullius, T. D., ed. Metal-DNA Chemistry. American Chemical Society Symposium Series no.
402. Washington, D.C.: American Chemical Society, 1989.
![Page 7: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/7.jpg)
SUGGESTED READINGS 591
XII. Related Topics
Berg, J. M. Metal-binding domains in nucleic acid-binding and gene-regulatory proteins. Prog.lnorg. Chem. 37 (1989), 143-185.
Bouwman, E., W. L. Driessen, and J. Reedijk. Model systems for type-I copper proteins: Structures of copper coordination compounds with thioether and azole-containing ligands. Coord.Chon. Rev. 104 (1990), 143-172.
Brudvig, G. W., and R. H. Crabtree. Bioinorganic chemistry of manganese related to photosynthetic oxygen evolution. Prog. lnorg. Chem. 37 (1989),99-142.
Chapman, S. K. Blue copper proteins. Persp. Bioinorg. Chon. 1 (1991), 95-140.Chasteen, N. D., ed. Vanadium in Biological Systems: Physiology and Biochemistry. Boston:
Kluwer Academic Publishers, 1990.Christou, G. Manganese carboxylate chemistry and its biological relevance. Ace. Chem. Res. 22
(1989), 328-335.Coughlan, M., ed. Molybdenum and molybdenum-containing enzymes. Oxford: Pergamon Press,
1980.Eichhorn, G. L., and L. G. Marzilli, cds. Metal-ion induced regulation of gene expression. Adv.
lnorg. Biochem. 9 (1990).Evans, C. H. Biochemistry of the Lanthanides. New York: Plenum Press, 1990.Frieden, E., cd. Biochemistry of the Essential Ultratrace Elements. New York: Plenum Press,
1984.Hinton, S. M., and D. Dean. Biogenesis of molybdenum cofactors. Crit. Rev. Microbiol. 17
(1990), 169-188.Jameson, R. F. Coordination chemistry of copper with regard to biological systems. Metal Ions
Bioi. Syst. 12 (1981), 1-30.Keppler, B. K. Metal complexes as anticancer agents: The future role of inorganic chemistry in
cancer therapy. New.J. Chem. 14 (1990), 389-403.Kurtz, D. M., Jr. Oxo- and hydroxo-bridged diiron complexes: A chemical perspective on a
biological unit. Chern. Rev. 90 (1990), 585-606.Lancaster, J. R., Jr., cd. The Bioinorganic Chemistry (~lNickel. New York: VCH, 1988.Lippard, S. J. Oxo-bridged polyiron centers in biology and chemistry. Angew. Chern. Inti. Ed.
Eng. 27 (1988),344-361.Pecoraro, V. L., ed. Manganese Redox Enzymes. New York: VCH, 1992.Que, L., Jr., and A. E. True. Dinuclear iron- and managanese-oxo sites in biology. Prog. lnorg.
Chem. 38 (1990), 97-199.Rajagopalan, K. V. Molybdenum: An essential trace element in human nutrition. Annu. Res.
Nutr. 8 (1988), 401-427.Rehder, D. The bioinorganic chemistry of vanadium. Angew. Chon. Inti. Ed. Eng. 30 (1991),
148-167.Sigel, H., and A. Sigel, eds. Aluminum and its role in biology. Metal Ions Bioi. Syst. 24 (1988).Sigel, H., and A. Sigel, eds. Antibiotics and their complexes. Metal Ions Bioi. Syst. 19 (1985).Sigel, H., and A. Sigel, eds. Compendium on magnesium and its role in biology, nutrition, and
physiology. Metal Ions Bioi. Syst. 25 (1989).Sigel, H., and A. Sigel, eds. Nickel and its role in biology. Metal Ions Bioi. Syst. 23 (1988).Spiro, T. G., ed. Molybdenum Enzymes. New York: Wiley, 1985.Stadtman, T. C. Some selenium-dependent biochemical processes. Adv. Enzymol. 48 (1979),
1-28.Stiefel, E. 1. The coordination and bioinorganic chemistry of molybdenum. Prog. lnorg. Chern.
22 (1977), 1-223.
![Page 8: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/8.jpg)
592 SUGGESTED READINGS
Sykes, A. G. Plastocyanin and the bluc copper proteins. Struct. Bond. 75 (1991), 175-224.Thorp, H. H., and G. W. Brudvig. The physical inorganic chemistry of manganese relevant to
photosynthetic oxygen evolution. New 1. Chern. 15 (1991), 479-490.Vallee, B. L. Zinc: Biochemistry, physiology, toxicology, and clinical pathology. BioFactors 1
(1988),31-36.Vallee, B. L., J. E. Coleman, and D. S. Auld. Zinc fingers, zinc clusters, and zinc twists in
DNA-binding protein domains. Proc. Natl. Acad. Sci. USA 88 (1991), 999-1003.Vincent, J. B., and G. Christou. Higher oxidation state manganese biomolecules. Adv. Inorg.
Chern. 33 (1989), 197-257.Vincent, J. B., G. L. Olivier-Lilley, and B. A. Averill. Proteins containing oxo-bridged dinuclear
iron centers: A bioinorganic perspective. Chern. Rev. 90 (1990),1447-1467.Wever, R., and K. Kustin. Vanadium: A biologically relevant element. Adv. Inorg. Chern. 35
(1990),81-115.Wieghardt, K. The active sites in manganese-containing metalloproteins and inorganic model
complexes. Angew. Chern. Intl. Ed. Eng. 28 (1989), 1153-1172.
![Page 9: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/9.jpg)
Note: Page numbers preceded by a C indicate material in the color plate section.
AACEl/CUP2, 494Acetate, 111Acetate synthetase, 98Acetylene, 432
binding to metal-sulfur sites, 442binding/reactivity, 441bonding modes, 4421T-bonding to metals, 442
N-Acetylpenicillamine, 511Aconitase, 393, 394cis-Aconitate, 393Acridine orange, 569Actin, 141Actinomycetes, 413Adair constants, 182Adair model, 180Adamantane structure, 399Adamantane-like Fe6(SR)w4- complexes,
398Adenine, 457Adenine N7, 459Adenosine monophosphate, 518Adenosine triphosphate (seeAdhesion molecule, 154Adiabatic electron transfer, 338, 339Adrenodoxin, 379Aequorin, 13, 114Aerobic bacteria, 413Aerobic organisms, 261Aerobic respiration, 324Affinity cleavage, 489Alcohol dehydrogenase, 39, 44, 48, C-6Aldehyde
dismutation, 90oxidation, 90reductase, 12
Aldolase, 44
Alkaline phosphatase, 39, 44, 508active-site structure, 87proposed catalytic mechanism, 88structure, 87
Allosteric effectors, 176, 185Amavadine, 10Amide hydrolysis, 79Amine oxidation, 284Amino acids, 162Ammonia synthesis, 412a-Amylase, 39Anaerobic organisms, 261, 413Anaerobic respiration, 324J-\lI lt;lI11.d, 506Anhydride intermediate, 283Annexins, 135, 148Antibodies as imaging reagents, 516Anticancer drugs, 519Antioxidants, 262, 263Antiport, 124, 161Apatite, 30, 156Aragonite, 30, 112, 156Archaebacterial methanogens, 413Ascidia nigra, C-lAscorbic acid, 262Ascorbic acid oxidase, 4Aspartate, 111Aspartate transcarbamylase, 44ATP hydrolysis, 432ATP role in nitrogen 432ATP synthesis, 253ATPases, 39, 124Atropisomers, 217Auranofin, 505Autoxidation, 258Axial ligation, 2983' -Azidothymidine 524Azofermo,416 593
![Page 10: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/10.jpg)
594 INDEX
Azoferredoxin, 416Azotobacter vinelandii ferredoxin I
391-393Azotobacter vinelandii nitrogenase Fe
protein, 418Azurin, 318
reaction with inorganic reagents, 343
BB1 protein, 331B12 (also see coenzyme B12), 98Blrdependent enzymes, 97B2 protein, 331Bacteriochlorophyll, 329Bacteriochlorophyll-protein complex, 327
structure, 328Bacteriopheophytin, 329Bam 551
111, 115-117structure, 116
Basal lateral membrane, 122, 123, 161Basket Fe6S62+ IFe6S6 + cores, 398Basket-handle structure, 399Benzenethio1ate, 378Bio1ulninescence, 113Biomineralization, 112, 156
models, 33Bis-imidazole iron porphyrins, 268Bis-pocket porphyrins, 220Bleomycin, 456, 496, 515, 527
active form, 497, 498imaging reagents based on, 515, 516mechanism of 497, 499metal-substituted derivatives, 497structure, 498, 516
Blood plasma, 2, 108, 112Blood-clotting enzymes, 154Blue copper protcins, 309, 318
cross electron-transfer reactions, 342Blue-green algae, 413Bohr effect, 176Bone, 157Bone matrix, 158Bovine calbindin D9b IIIBromoperoxidase, 5Brush border, 123Brush-border membrane calcitriol, 122
CCadmium carcinogenicity, 5 I 3Cadmium toxicity, 5I2Cadmium(II)-substituted carbonic anhy-
drase, 72Cadmium-substituted proteins (chemical
shift), 47Cadmium(II)-substituted zinc proteins, 46Calbindin D9b 122, 143, 144, 146
Ca2+ binding, 147porcine, C-10structure, 146, 147, C-10
Calbindin D28k , 144Calbindins, 135Calcified tissue, 156Calcimedins, 135Calcite, 30, 112, 156Calcitriol, 124Calcium
biological 109biological significance, 107biomineralization, 156Ca2+-ATPase, 124, 125Ca2+-ATPase reaction cycle, 127Ca2+-ATPase structure, 126, 127Ca2+-binding extracellular proteins,
151Ca2+-binding intracellular proteins,
136Ca2+-binding proteins (sarcoplasmic),
148Ca2+-binding proteins in microorga
nisms, 159-bindiine pf()teins in prokaryotes,
160Ca2+-dependent proteases, 148Ca2+-dissociation and -association
rates, 137Ca2+-induced Ca2+ release, 132Ca2+_Mg2+ sites, 142Ca2+-selective microelectrode, 113,
114Ca2+INa + electrochemical potenltial,
129Ca2+INa+ exchange, 129Ca2+INa + free-energy change, 130Ca2+INa+ transport, 126complexes, fluorescence, 116
![Page 11: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/11.jpg)
complexes, stability constants, IIIcomplexing agents (fluorescent), 115concentration determination, 113, 118concentration in body 151coordination chemistry, 109, 10cystosolic concentration, 107fluxes, in sea urchin egg, C-7in beer, 109in cells, 113in fluids, 109intracellular receptors, 134intracellular transport, 124isotopes, 108ligand preferences, 110messenger system, 132mitochondrial 131mitochondrial 130non-mitochondrial 131paSSive 122probes, 15pUlnping rate, 31recommended allowance, 108regulation, 121specific sites, 142terrestrial 108toxicity, 510transport, 121transport across cellular membranes,
125transport, molecular components,
123uptake and secretion, 122
Calelectrin, 135, 148135, 136, C-9
bovine C-9Ca2 + binding, 138M 13 interaction 139structure, 136, 138
135Calpactin, 135~a'fJa,,", 136, 148Calsequestrin, 128d-Camphor, 292Camphor 5-monooxygenase, 285Carbon-dioxide hydration, 48-51Carbon monoxide
bmldlflg to iron porphyrins, 237binding to iron proteins, 186, 208
INDEX 595
distal histidine interactions, 237oxidase, 379
Carbonic anhydrase, 39, 44, 48activity, 49activity with radiolabeled substrate, 52anion binding, 51apoenzyme, 50catalytic cycle, 74catalytic mechanism, 73coordinated water, 57, 62
Il)-~mb,;tituted, 69-71CPK models, C-2, C-3derivatives, 61
C-Iisozymes, 49, 54kinetics, 52ligand-binding sites, 61,""'U"'0, 76-78
dependence, 50, 51role of arginine, 57structure, 49, 51, 75structures of 62substrate 75substrate 75zinc coordination, 49
Carb(mnl0[ioxyh(~ml)globJn structure, 233Carbonmonoxymyoglobin structure, 235Carboplatin, 519, 528, 579
structure, 518O'-Carboxyglutamic acid Ill, 151Carboxylic ester hydrolysis, 86Carboxypeptidase, 39, 508Carboxypeptidase 44, C-4
active site, 80-82, C-5anion binding, 82intermediates, 82kinetics, 82metal 81proposed catalytic mechanism, 83, 84structure, 80
Carcinogenic metals, 513f3-Carotene, 263Carotenoids, 328Carp 111Catalase, 191, 263, 295, 297
mec:hanism, 297structure, 295
Catechol dioxygenases, 260, 276
![Page 12: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/12.jpg)
596 INDEX
Catechol dioxygenases (continued)active site, 277, 279iron coordination, 280mechanism, 280, 282, 283spectroscopy, 277, 278, 280structure, 279substrate activation, 282
Cellular conditions, 253Ceruloplasmin, 4, 263, 264, 509Cervical cancer, 527Charge separation, 329Chelation therapy, 509, 5 513Chiton, 30Chlorocruorin, 169, 170, 184, 185Chloroheme, 185
structure, 169Chlorophyll a, 328Chlorophyll b, 328Chromate carcinogenicity, I I, 513Chromatium 385, 386Chromium, 10
biological significance,Stoxicity, 11
Chrysotherapy, 518Chymotrypsin, Ill, 137, 152Chymotrypsinogen, 111, 137, 152Cisplatin (also see cis-DDP), 505, 519
administering with sulfur compounds,528
clinical activity, 523clinical picture, 527discovery, 522efficacy improvement, 577-579mechanism of 526pharmacology, 528pre-clinical and clinical 524target, 533toxicology, 527
Citrate, 111, 393, 422Clostridium pasteurianum hydrogenase I,
407Clostridium pasteurianum hydrogenase
407Co(DIPhH (shape-selective cleavage of
nucleic acids), 486Co(phenhH
, 468Cobalamin (also see coenzyme B 98Cobalamin reactivity, 100Cobalt
biological significance, 4chemistry, 205oxyhemoglobin, 235porphyrins, 198, 206, 224, 240toxicity, 510
Cobalt(U)-rubredoxin, 377Cobalt(H)-substituted carbonic anhydrase,
54,55,59,68acid-base equilibria, 56, 57inhibitors, 57, 58, 65-67isozymes, 56
59,60NMR, 62, 64, 65NMRD, 63, 64
Cobalt(II)-substituted copper-zinc superoxide dismutase, 303
Cobalt(II)-substituted liver alcohol dehy-drogenase, 93
Cobalt(Il)-substituted zinc proteins, 45Cobalt-dioxygen model systems, 205Cobalt-oxo 198Cobalt-porphyrin hemoglobin and myo-
globin derivatives, 205Cobalt-porphyrin oxo species, 205Cobamides, 98Coelenterazine, 113Coenzyme B 12 , 100
biological reactivity and mechanism,100
Co-C bond, 100cyano complex (vitamin Bd, 98enzymes dependent on, 98physical properties, 98
UIH'UIH,,,, 100radical formation, 101spectroscopy, 99structure, 98, 99
Coenzyme Q, 316Collagenase, 39Combination chemotherapy, 527Complex I (NADH-Q reductase), 325Complex II (succinate-Q reductase), 325Complex III (ubiquinol-cytochrome c re-
ductase), 326Complex IV (cytochrome c oxidase), 326Cooperative ligand binding, 174-182Copper
biological significance, 3chemistry, 204
![Page 13: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/13.jpg)
deficiency, 508model complexes, 270storage, 16toxicity, 509
Copper(II) tet b, 300Copper(II)-substituted carbonic anhy
drase, 69anion binding, 69
6970,71
NMRD,71Copper(II)-substituted liver alcohol dehy-
drogenase, 93Copper(II)-substituted zinc proteins, 46Copper-containing dioxygen carriers, 185Copper-dioxygen model systems, 204Copper-thiolate model complexes, 273Copper-zinc superoxide dismutase, 298
active site, 301active-site channel, 302, 304activity, 299, 300cobalt derivative, 303
308-310mhllblt101n, 304loss of bridging ligand, 304mechanism, 303metal-substituted derivatives, 305,
306, 308, 310reaction with anions, 304role of copper, 302role of zinc, 48, 302spectroscopy, 305, 306-310structure, 300, 301-303
Core extrusion cluster 391Correlation time, 63Corrin, 98Creatine kinase, 39Cross electron-transfer reactions, 334,
337Cruciform sites, 485-487~U\Il'J'<OHJ2+, 471Cu(phenh + DNA footprinting, 482CUA,271CUA ENDOR, 272CUA 272CUB, 271Cyanobacterium (blue-green alga) Ana
baena cylindrica, 413Cyclic 132
INDEX 597
Cystine, 315Cytochrome a, 271, 272, 326Cytochrome a3, 271, 273, 326Cytochrome arCus, 273Cytochrome bs-cytochrome c, 349, C-12Cytochrome bs62 , 326Cytochrome bS66 , 326Cytochrome bS68 , 326Cytochrome c, 9, 322, 326, 352
alkaline transition, 352electron transfer, 356, 357interaction with redox 355reduction potentials, 353, 354structure, 322structure of heme area, 353zinc-substituted, 350
Cytochrome c oxidase, 260, 267, 326carbonmonoxy derivative, 275cyanide adduct, 272, 273
273EXAFS,273
reduced, 275mechanistic studies, 275metal centers, 271redox components, 267spectroscopy, 271
Cytochrome c peroxidase, 295Cytochrome c reductase, 326Cytochrome c', 322
structure, 323Cytochrome Cj, 326Cytochrome C3, 322
structure, 323'ytochn)me nOlll1en,2Iature, 321
Cytochrome PA50, 284, 285, 297,332
active-site structure, 293catalytic cycle, 285dioxygen bond cleavage, 293free radical intermediates, 292metalloporphyrin model systems,
288proposed mechanism, 286specificity, 292, 294structure, 292
Cytosine, 457Cytosine N3, 459Cytosol, 161Cytosolic compartment, 123
![Page 14: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/14.jpg)
598 INDEX
Dcis-DDP (also see cisplatin)
anticancer activity, 525bifunctional adducts, 536, 538bifunctional binding modes, 539critical lesion, 571crosslinks, 538DNA adducts, 551-563DNA antibodies, 553DNA bending, 544, 545DNA binding kinetics, 534DNA binding sequence preference, 566DNA-protein crosslinks mediated by,
539drug resistance, 549efficacy improvement, 577ethidium bromide complexes, 569Exom mapping, 568hydrolysis, 532, 536hydrolysis of chloride, 530inhibition of replication, 546, 547inhibition of transcription, 570mediated structural changes in DNA,
540model complexes with nucleobases,
563molecular mechanism, 570monofunctional adducts, 536, 538mutagenesis and repair, 548reaction with DMSO, 532reaction with serum proteins, 532reaction kinetics, 539reactions in aqueous media, 530regioselectivity, 55 Jsite-specific DNA platination, 573structure, 518target, 533
trans-DDPanticancer activity, 525bifunctional adducts, 536, 538DNA adducts, 551, 564DNA binding kinetics, 534hydrolysis, 536monofunctional adducts, 536, 538oligonucleotide structure, 565reaction kinetics, 539regioselectivity, 551
Dehydrogenation, 90
Deoxyhemoglobins and model complexes,231
Deoxymyoglobin active-site structure,231
Deoxyribonucleotides, 456Desferrioxamine, 510Desulforedoxin, 369Desulfovibrio gigas 393, 394Desulfovibrio gigas hydrogenase, 409Detoxification enzymes, 263Dewar-Chatt-Duncanson olefin binding,
438Diacylglycerol, 149,518cis-Diamminedichloroplatinum(II) (see
cisplatin, cis-DDP)Diethylenetriaminepentaacetic acid
(DTPA),51ODihydride complexes, 411Dihydrogen (see hydrogen)Dinitrogen (see nitrogen)Dioldehydrase, 98Dioxygen
adducts, 234carrying capacity of 179chemistry, 183, 191,253-259concentration in living systems, 178coordination geometries, 195, 196,211heterolytic bond cleavage, 293kinetics, 256orientation in hemoglobin, 232radical pathways, 259redox properties, 254, 255sequestration and transport, 168singlet state, 257species (bond lengths), 194storage proteins, 170stretching frequencies, 195thermodynamics, 254toxicity, 260-267triplet state, 256use, biological, 253
Dioxygen bindingcooperative, 174-182cooperativity models, 180curves, 175distal effects, 223, 228, 229, 235, 236kinetics, 172, 182, 186, 187models, 170, 229, 238, 240
![Page 15: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/15.jpg)
non-cooperative, 174proximal effects, 225, 228, 229thermodynamics, 172, 173, 186, 187to hemoglobin, 238
Dioxygen carriers, 167-246biological, 167-170, 183- 215,
216ligand affinity, 219-221model systems, 170, 171,204,205,
217-219,222properties, 171thermodynamic and kinetic parameters,
186, 1872,3-Dimercaptopropan-l-ol, 509Dioxygenases, 276-283, 332Dipeptidase, 392,3-Diphosphoglycerate (2,3-DPG), 179Distal effects, 223, 228, 229, 235-237Distal histidine, 216, 235
interaction with dioxygen, 236Distamycin-Fe(Il)EDTA,4891,2-Dithiolate ligands, 4411,2-Dithiolenes, 441DNA
A-DNA, 457, 566, 567, C-14B-DNA, 457, 566, 567, C-14bending, 543bent, 484conformational changes with Pt bind
ing, 542crosslinks with protein, 539DDP interactions (see cis-DDP, trans-
DDP)double 456footprinting, 481insertion into a plasmid, 574interactions with protein, 550metal stabilization of structure, 461oxidative damage repair, 264oxidative degradation, 262repair, 549shape-selective probes of, 485-487strand scission, 476structural changes upon platination,
565,566unwinding, 475, 540, 544Z-DNA, 458, 566, 567, C-J4
DNA polymerase, 39
INDEX 599
DNA topoisomerase, 500DNAse 1,500Dominant Hypothesis, 414, 416-419Doming, 226Dopamine-,B-hydroxyJase, 508Drug design, 524, 577-580Drug resistance, 528, 549, 573Drugs, anticancer, 519-526DTPA,510
EEcoRI,500EDTA, 111,509,510,513EF-hand, 137, 141, 146, 147, 159, 160EGTA, 111Electrochemical mode of redox activa
tion, 401Electrogenic pump, 131, 161Electron energy loss spectroscopy
(EELS), 118, 190Electron paramagnetic resonance
193,374of Fe2S2 ferredoxin, 380of Fe3S4, 395of FeMoco, 420, 421, 424of Fe-S proteins, 374, 375of hydrogenases, 405-410of nitrogenase, 419-424
Electron probe x-ray microanalysis(EPMA), 118, J19
Electron transfercross reactions, 334-336, 342, 343distance dependence, 344in biology, 315-333in cytochrome c, 352-358in photosynthetic reaction centers, 358,
359in protein-protein complexes, 349-351in ruthenium-modified proteins, 347,
348, 356-358long-range reactions in proteins, 343-
349pathways, 345, 348, 356-358self-exchange reactions, 334-336theory, 336-342
Electronic coupling, 338, 343, 356Electronic relaxation time, 63Electrophoresis, 543
![Page 16: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/16.jpg)
600 INDEX
Endocytic vesicles, 123Endocytosis, 161Endodermis, 9Endonexin, 135, 148Endonucleases, 500, 501Endoplasmic reticulum (ER), ll, 119,
124, 161ENDOR spectroscopy, 374
of hydrogenase I, 408of nitrogenase, 423, 425
Endosome, 18Endothelial cell, 158Energy release, 324Energy storage, 324Enterobactin, 20, 21, 23Enzymes, detoxification, 263Epidermis, 9Epithelial cells, 122, 161Epoxidation reactions, 256, 284Erythrocruorins, 169, 170, 184Erythrocytes, 124, 161ESEEM spectroscopy, 374
of FeMoco, 424of hydrogenase 1, 408
Essential metals, 506, 507Ester hydrolysis, 79ETH 1001, 113, 14Ethanoldeaminase, 98Ethidium bromide, 540, 568
complexes with cis-DDP, 569Eubacterial methanotrophs, 413Eukaryotic cells, 121, 161Evolution, biological, 13Exchange 63Excision repair, 549Exocytosis, 123, 148, 162Exonucleases, 500
mapping, 551Extended x-ray absorption fine structure
(EXAFS), 193, 372of Fe3S4, 393-395of FeMoco, 426of ferredoxins, 388of FeV protein, 434of hydrogenases, 409, 410of nitrogenase, 426of rubredoxin, 372of thiocubanes, 437
FF430, 4F center, 407, 4085F-BAPTA, 117
NMR,117Facultative aerobes, 413FAD (see flavin adenine dinucleotide)Fatty acid w-hydroxylation, 369Fe(Bis-Poc)(l,2-Me2Im), 220-222Fe(C2Cap)((l-Melm)(CO), 237, 240Fe(C2Cap)(l-Melm), 220-222Fe(C2Cap)(I,2-Me2Im), 220-222Fe(C2COP)(l-MeIm)(CO), 234Fe(PF)(l-MeIm), 220, 239Fe(PF)(l-Melm)(02), 234, 238, 240Fe(PF)(l,2-Me2Im), 220-222Fe(PF)(2-MeIm), 231, 240Fe(PF)(2-Melm)(02), 234
222Fe(Poc)(l,2-MeIm)(CO), 234Fe(Poc-PF)( -MeIm), 220-222
I ,2-Me2Im), 220-222,2-Me2Im)(CO), 237, 238
Fe(TPP)(2-MeIm), 231, 240Fe(TPP)(Py)(CO), 234Fe2S2 centers, 366, 368, 379, 383, 386
EPR, 375, 380in ferredoxins, 320, 370, 378-382in Rieske proteins, 382localized valence trapping, 381mixed-valence, 384models, 382-384Mossbauer spectra, 376, 381
381redox potential, 370, 400resonance Raman spectra, 381
Fe3 model systems, 395Fe3/Fe4 proteins, 395Fe3S3 center, 392Fe3S4 centers, 367, 368, 391-395
ENDOR,396375, 392, 393, 395, 396
EXAFS, 393, 394in proteins, 371, 391-395Mossbauer spectra, 376, 395
396redox potential, 371, 400resonance Raman spectra, 395
![Page 17: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/17.jpg)
Fe4S4 centers, 366-368, 388-390, 442375,385,386
EXAES,388in ferredoxins, 320, 384-388~ 320, 384-388MCD,387models, 388-390Mossbauer spectra, 376, 387NMR,388properties in proteins, 370, 371redox potential, 370, 371, 400resonance Raman spectra, 387
Fe6S63+/Z+ cores, 398Fe6Sl- cores, 397, 398Fe7S63+ cores, 398FegS65 + cores, 398FelgS3010- cores, 398, 399FeFe protein, 435FeFeco,435FeMo cofactor (see FeMoco)FeMo protein, 414, 416-420, 424, 425
424EXAFS,424Mossbauer spectrum, 425structure, 443
FeMoco, 414, 418, 420-442assembly reactions, 422biosynthesis, 414EPR,424ESEEM,424EXAFS,424models, 428, 429, 436, 437oxidation states, 421structure, 443, 444
FeMoS clusters, 430, 436, 437Fenton reaction, 463, 464, 482, 484fepA protein receptor, 22Ferredoxins, 320, 365-367, 370, 371
FezSz (see FezSz centers)Fe4S4 (see Fe4S4 centers)
Ferrihydrite, 30, 31Ferritin, ]2-16,31,263
core, ]5formation, 15models, 31,32structure, 14
Ferryl complex, 289FeV proteins, 433-435
INDEX 601
FeVco, 435FeWS clusters. 430Filamentous bacterial growth, 523Flavin, 512Flavin adenine dinucleotide (FAD), 326Flavin mononucleotide (FMN), 317, 318Flavodoxins, 317, 414
structure, 318Flavohemoglobin, 349Fluo-3, 11], 115Fluorescent probes of Caz +, 115FMN (see flavin mononucleotide)2-Formylpyridine thiosemicarbazone, 521Franck-Condon principle, 336Free-radical autoxidation, 258Fur protein, 494Fura-2, 111, 115, 116, C-7
GAL4,493Gallium anticancer activity, 520Giant squid axon, 129Gla-Gla dipeptide, IIIGlucocorticoid receptor, 493Gluconeogenesis, 107, 162Glucose tolerance factor, 10Glutamate mutase, 98Glutathione, 262, 263Glutathione peroxidase, 295Gly-Gly dipeptide, IIIGly-Gly-His, 489, 490Glyceroldehydrase, 98Glycolysis, 107, 162Glyoxalase, 44Goethite, 31Gold
anticancer activity, 520, 580pharmaceuticals, 518thioglucose (Solganol), 518thiomalate, 518
Growth retardation, 505Guanine, 457Guanosine triphosphate(GTP)-binding
proteins, 518Gypsum, 112, 156
H center, 407, 408
![Page 18: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/18.jpg)
602 INDEX
Hz (see hydrogen)Haber-Bosch process, 412Haldane effect, 176Head and neck cancers, 527Heart disease, 505Heavy-metal poison, 505Heavy-metal staining of RNA, 461Heme a, 271,321Heme b, 169, 185,27.°,285,295,321Heme c, 9, 321Heme octapeptide, 353Heme-containing dioxygen carriers, 184Hemerythrin, 168, 170, 184, 187-190,
210-212, 216active site, 190,210dioxygen coordination, 211dioxygen stretching frequencies, 195Hill coefficients, 189metal ligands, 211, 216oligomerization, 189spectral changes with oxygenation, 212structure, 190
Hemochromatosis, 509Hemocyanin, 168, 170, 184, 185, 187,
188,210-212,216active site, 210cooperativity, 188dioxygen stretching frequencies, 195metal ligands, 211, 216spectral changes with oxygenation, 212structure, 188, 189
Hemoglobin, 168-170, 180-186,229244
cooperativity, molecular mechanismfor, 238
dioxygen stretching frequencies, 195distal histidine mutants, 236electron transfer, 351electronic structure, 213hybrid, 350hydrophobic pocket, 232ligand affinities, 220, 221metal ligands, 215model systems, 217, 218, 229-234mutants, 244structures, 241-243, 351tetramer, 185
Hemosiderin, 13Heterothiocubane models, 437
Heterotropic allosteric effectors, 178Heterotropic allosteric interaction, 176High-mobility group (HMG) protein, 540,
572High-potential iron-sulfur proteins
(HiPIPs), 320, 384-387High-valent metal-oxo complex, 291,
295-298Hill coefficient, 177Hill equation, 177Hill plot, 174, 175, 177Hin recombinase, 489Histones, 540Homocitrate, 422Homotropic allosteric interaction, 174Horseradish peroxidase (also see peroxi-
dase), 295Human carbonic anhydrase II, C-2, C-3Human testes-determining factor, 491Hybrid hemoglobins, 350Hydrazine (NzH4), 415Hydride transfer, 90Hydrogen (Hz), 403
activation, 412, 441bonding to metal sulfides, 412bonding to metals, 411energy-level diagram, 404inhibition of nitrogen fixation, 433modes of Hz/H bonding, 412molecular orbital scheme, 404redox properties, 404, 405
Hydrogen peroxide, 254, 255, 295Hydrogenase, 401, 402, 405
H clusters, 409hydrogenase I, 406hydrogenase II, 406Mossbauer spectra, 408
Hydrogenomonas, 403Hydrolases, 38Hydrolysis reactions, 37-39Hydrolytic chemistry of nucleic acids,
465-467Hydropathy, 162Hydropathy plots, 125Hydroperoxo coordination geometries,
196Hydroxide coordination to metals, 42Hydroxide transfer, 89Hydroxyapatite, 112, 156
![Page 19: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/19.jpg)
j3-Hydroxyaspartic acid (Hya), 154Hydroxyl radical, 254, 266
reaction with nucleic acids, 463Hydroxylation reactions, 255, 256, 284,
291Hypochromism,473
II.L.S.,525ICaBP, 122ID90 , 526Imaging reagents, Fe(III), Gd(III),
Mn(II), 517Indices of antitumor activity and toxicity,
525Infrared spectroscopy (IR), 193Initiators, 259Inner-sphere electron-transfer reactions,
335Inner-sphere reorganization energy, 339,
340Inorganic pyrophosphatase, 39Inorganic sulfide, 379Inositol, 517Inositol phosphates, 517
inositol 1,4,5-triphosphate, 132,518inositol phosphate mechanism of ac
tion, 133Intercalation of metal complexes in DNA
460, 462, 470Intercalators, 541, 542Intradiol catechol dioxygenase (also see
catechol dioxygenase), 276Inverted free-energy region, 341Iodosylbenzene, 287, 288, 291Ion microscopy, 120Ion-selective electrodes, 113Iron (also see Fe)
biological significance, 2, 3biomineralization, 30deficiency, 506distribution in humans, 7EXAFS of FeMoco, 426hydrogenases, 405ligand field considerations, 6nitrogenase, 435oxo complexes, 198,274,287-291,
296,497peroxo complexes, 291
INDEX 603
porphyrin, 198, 202porphyrin, autooxidation, 199porphyrin, biological oxidation and
spin states, 201, 203porphyrin, dioxygen and carbon mon-
oxide affinities, 224proteins, 7, 414, 418redox potentials, 8solubility, 6storage and transport,S, 12, 17superoxide dismutases, 298terrestrial distribution, 6toxicity, 509uptake by siderophores, 22
Iron-sulfur proteins, 319, 370, 371Mossbauer spectra, 376NMR,377resonance Raman spectra, 377
Iron-sulfur units, 367, 368Iron-tyrosinate proteins, 277Isocitrate, 393Isocyanide binding to metals, 209
KKidney toxicity, 527Kinases,97Kruppel protein, 491
LLaccases, 309a-Lactalbumin, Ill, 152, 154j3-Lactamase II, 39,44Lactate, IIILactoferrin, 18Lactotransferrin structure, 19Langmuir isotherm, 174, 177LDso,526Lead cleavage of RNA, 466Lead toxicity, 512Leghemoglobin, 184, 185, 243Leguminous plants, 413Lepidocrocite, 31Leucine aminopeptidases, 39Ligand affinities (hemoglobins and
models), 220Lipid peroxidation, 262, 266Lipocortin, 135, 148Lithium and mental health, 517
![Page 20: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/20.jpg)
604 INDEX
Liver alcohol dehydrogenase \,-,n.LJUI.
90, C-6active site, 91conformational change, 91electronic spectra, 93kinetics, 94metal-substituted derivatives, 92, 93NADH binding, 91
dependence of activity, 92, 95proposed catalytic cycle, 95, 96protonation scheme, 94structure, 90
Longitudinal relaxation time, 63Lumen, 123Lyases, 39, 90
MM center (also see FeMoco), 420M-N binding, 439M-S bonding to H2/H, 412M-T4MPyP, 471M13mp 18, 575Macrobicyclic amino cryptate, Ill, 137Magnesium ion (Mg2+) complex stability
constants, IIIMagnetic circular dichroism (MCD) of
Fe2S2 clusters, 387Magnetic resonance imaging (MRI), 517Magnetic susceptibility, 193Magnetite, 13, 30, 31Magneto-bacteria, 30Malonate, IIIManganese
biological significance, 4peroxo complexes, 291porphyrin, 199porphyrins, DNA footprinting, 482superoxide dismutase, 298toxicity, 5 I0
Manganese(I1)-substituted zinc proteins,47
Manic-depressive behavior, 517Marcus cross relation, 342Marcus theory, 339Mastoparan, 138MECAM, 20, 23, 24Mellitin, 138Membrane cytoskeleton, 148mer operon, 5 II
MerA, mercuric reductase, 5ll, 512MerB, organomercury lyase, 511, 512Mercury resistance, 494, 5 IIMercury toxicity, 510Mercury-binding protein, 494MerP, 511MerR, 494, 495, 511MerT, 51 IMesophilic bacteria, 413Metal complexes
antitumor (nonplatinum), 580binding to nucleic acids, 468-475
Metal ion storage, 16Metal ion transport, 17,25,126
thermodynamics, 126Metal phosphine anticancer activity, 520Metal requirements, biological, 507Metal storage, IMetal substitution in zinc proteins, 44Metal toxicity, 508Metal transport, IMetal-dioxygen species, 197Metal-dioxygen structure and spectros-
copy, 192Metal-ion mediated oxidation, 264Metal-N2 complexes, 439Metal-oxo orbital scheme, 199Metal-peroxo intermediate, 299Metal-substituted heme protein, 350Metal-substituted zinc proteins, 44-48Metallocene anticancer activity, 519, 580Metallodrug design, 524, 577Metalloenzyme-mediated dioxygen reac-
260Metallofootprinting reagents, 48 IMetallohydrolases, 38Metallointercalation, 470, 471, 520, 542Metallopeptidases, 38Metalloporphyrin
binding of carbon monoxide, 208binding of isocyanide, 209binding of nitric oxide, 208binding of nitroso species, 209complex geometry, 226d-orbital splitting diagram, 20 Ielectronic structure, 213-215ligand binding, 215model systems, 288
Metalloregulatory proteins, 493, 5 I I
![Page 21: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/21.jpg)
Metallothionein, 3, 16, 17, 264Methane monooxygenase, 284Methane synthetase, 98Methanogens, archaebacterial, 413Methemoglobin, 200Methidium-propyl-FeEDTA,478Methionine synthetase, 98N-methyl-n-aspartate (NMDA), 132Methyl transferase, 98ll'-Methylene-glutarate mutase, 98MethylmalonylCoA mutase, 98Metmyoglobin active-site structure, 231Michaelis-Menten scheme, 163Mitochondria, II, 119, 162
inner membrane, 124Mitochondrial electron-transfer chain, 324Mitochondrial redox component (com
plexes I-IV), 325Mo K-edge EXAFS (Klebsiella pneumo-
niae MoFe protein), 427Mo K-edge EXAFS of nitrogenase, 426M03S44+ core, 395MoFe protein, 416-418
crystals, 426structure, 442-444
Molecular light switches, 480Molecular mechanics, 561Molybdenum (also see 12
biological significance, 5Molybdenum nitrogenases (see nitrogen-
ases)Molybdoferredoxin, 416Monocapped prismatic structure, 399Monoimidazole complexes of iron por-
phyrins, 268, 269Monooxygenase enzymes, 284, 294, 332Mossbauer spectroscopy, 193, 374
481,482Mugeneic acid, 25Mugeneic acid-Co(III) complex, 26Multisite redox enzymes, 400Mung bean nuclease, 500MWC two-state model for cooperative li-
gand binding, 180, 181Mycobactin, 21Myeloperoxidase, 295Myochrisin,518Myoglobin, 184
active-site structure, 231
INDEX 605
cyanogen-bromide modified, 348, 349distal ligand mutations, 235electron transfer, 347-349electron-tunneling pathway, 348ligand-binding parameters, 239oxy and carbonmonoxy derivatives,
203structure, 169thermodynamic parameters for electron
transfer, 348Myosin, 141Myosin light-chain kinase (MLCK), 138
NN2 (see nitrogen)N2H2 (diimine, diazene, diamide), 415N2H4 (hydrazine), 415Nested al!ostery, 188Neutral protease, 39Nickel, biological significance, 4Nickel carcinogenicity, 513Nickel, EPR signals in hydrogenases, 409Nickel hydrogenases, 409, 410
activation/reactivity scheme for, 410inactivation by dioxygen, 412
Nickel(H)-rubredoxin, 377Nickel-iron hydrogenases, 405, 409, 411Nicotinamide, 315Nicotinamide adenine dinucleotide
(NAD),316Nicotinamide adenine dinucleotide phos-
phate (NADP), 316Nicotinic cholinergic agonist, 132NitB-,421nit D and nit K genes, 419nit genes, 413, 414Nit V mutants, 421Nit V nitrogenase, 422NiFe3S4 thiocubane structures, 395Nitrate reductase, 12Nitric oxide binding, 208, 209Nitrilotriacetate, IIINitrogen (N2), 415
binding modes, 438complexes, 437kinetic inertness, 415reduction to NH3, 415, 416
Nitrogen fixation, 412-416in Klebsiella pneumoniae, 414
![Page 22: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/22.jpg)
606 INDEX
Nitrogen fixation (continued)inhibition by Hz, 433intermediates, 414role of ATP, 432
Nitrogenases,412all-iron, 435, 436alternative, 433crystal structure, 442FeMo protein, 414FeMoco structure, 444homogeneous preparations, 419inhibitors, 432models, 436molybdenum, properties of, 417P-clusters, 422, 423purity, 419redox activation, 401substrates, 431, 432
Nitroso species binding, 209NMR (see nuclear magnetic resonance)Non-cooperative dioxygen binding, 174Non-heme iron dioxygen carriers, 188Nonadiabatic electron transfer, 338,
339Nonbiological Fe-S clusters, 398, 399Nonsymbiotic nitrogen-fixing plants,
413Normal free-energy region, 340Nuclear magnetic relaxation dispersion
(NMRD), 63, 64Nuclear magnetic resonance (NMR), 193
43Ca, 152113Cd, 14619F, I 7of Fe-S proteins, 377of metal complex/nucleic acid struc
tures, 473-475probes of Caz +, I 1767Zn, 44
Nucleases, 500Nucleic acid/metal complex interactions,
468, 479, 484, 485chirality, 468, 480H-bindimg, 462luminescence, 480
Nucleic acidshydrolytic chemistry, 465-467metal coordination, 459, 460reactions with metals, 462
redox chemistry with metal complexes,463,489
structures, 456Nucleophilic addition of hydride, 89Nucleophilic ~ddition of hydroxide, 89Nucleoside diphosphate kinase, 97Nucleosome core particles, 540
oOlefin binding, 438Oligonucleotide cleavage by metal com
plexes, 476-479Orbitals, bonding u and antibonding u*,
403Organelles, 162Organomercury lyase, 511, 512ortho hydrogen, 403Osmate esters, 461Osmium tetroxide, 461, 485Osteoblast, 157, 158Osteocalcin, 157Osteoclast, 157, 158Osteocyte, 158Osteogenic cell, 158Osteoid, 158Osteonectin, 157Osteoporosis, 157, 162Outer-sphere electron-transfer reaction,
335, 336Outer-sphere reorganization energy, 340Ovarian carcinomas, 527Oxidant scavengers, 262Oxidation
of 284of iron porphyrins (mechanism), 198of nucleic acids by metal complexes,
462Oxidative addition, 197Oxidative damage repair, 264Oxidative dealkylation, 284Oxidative phosphorylation, 267Oxygen rebound mechanism, 291Oxygenases, 276Oxyhemerythrin (also see hemerythrin),
196,210Oxyhemocyanin (also see hemocyanin),
196, 204, 210Oxyhemoglobin (also see hemoglobin),
196, 213, 233
![Page 23: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/23.jpg)
Oxymyoglobin (also see myoglobin),233, 235
OxyR,265
pP-clusters, 418, 420, 422, 423, 442, 443p36 (Ca2 + /phospholipid-binding protein),
135, 148para hydrogen, 403Parvalbumin, 135, 137, 144-147Penicillamine, 513Peptidases, 38, 39Periodate, 287Pernicious anemia, 4, 505Peroxidase, 263, 295-298Peroxide anion, 194Peroxide shunt, 286, 291Peroxide stretching frequencies, 195Peroxisomes, 263Peroxo complexes, 274Peroxo coordination geometries, 196Peroxo species, 210Peroxo-bridged copper complexes, 274Peroxy intermediate, 283Peroxynitrite, 266Phenolate-to-iron(lH) charge-transfer tran-
sitions, 277Phorbol esters, 135, 162Phosphatases, 39,B-Phosphate, 112Phosphate backbone, 456
reactions with metal complexes, 462PhosphatidyIserine, 149Phosphocitrate, 131Phosphoglucomutase, 39Phosphoinositol, 149Phospholipase A2 , 39, Ill, 137, 152,
264catalytic mechanism, 153
Phospholipase C, 39, 149Phosphoproteins, 157Photoactivated cleavage of DNA, 464,
476,483Photosynthesis, 324, 327-330Photosynthetic bacteria, 329, 358Photosynthetic organisms, 413Photosynthetic reaction center, 329, 330,
358, C-13electron-transfer rates, 359
INDEX 607
Photosystem pigments, 327, 328Phycocyanin, 328Phycoerythrin, 328Picket-fence porphyrin, 217
ligand-binding properties, 220-224,228,239,243
structure, 218, 229, 230, 232Plasma membrane, 124Plastocyanin, 345
electron transfer, 345reaction with inorganic reagents, 343remote and surface binding sites, 346structure, 346
Platination of DNA, 565Platinol, 524Platinum anticancer drugs, 519, 522
molecular mechanism, 529Platinum-nucleobase model complexes,
563Plutonium toxicity, 510
bis-strapped, 222capped, 219, 220, 222, 228cation radical, 289chelated, 217flat-open, 222models for hemeproteins , 218picket-fence (pocket), 217, 218,
222strapped, 222tail-under, 217
Prebiotic era, 12, 260Primitive organisms, 12, 13Prokaryotic cells, 159, 162Proline trans/cis bond, 147Propeller twisting, 458, 487Protection of the metal-dioxygen moiety,
216Protein binding to cis-DDP modified
DNA, 572Protein kinase C (PKC), III, 133, 135,
149activation, 149structure, 150
Protein-based radical, 315Protein-protein complexes, 349Proteoglycans, 157Prothrombin, 154Prothrombinase complex, 155
![Page 24: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/24.jpg)
608 INDEX
Protocatechuate 3,4-dioxygenase (PCD),276
structure, 279Protoheme, 185Proton pumping, 276Proton-induced x-ray emission (PIXEL
120microprobe, C-8
Protoporphyrin IX dianion, 171Protoporphyrin structure, 169Proximal effects, 223, 225, 228, 229Proximal histidine, 215Proximal ligand, 232Proximation, 400Pseudobactin, 21Pt(terpy)Cl + , 462PtA2 {d(GMP)}, 2,531PtA2{d(pApG)},531PtA2{d(pGpG)}, 531Purine heterocycles, 456Purine N7, 459Putidamonooxin, 379Putidaredoxin, 332, 379Pyochelin, 21Pyridoxal-requiring monamine oxidase,
508Pyrogallol, 28Pyruvate carboxylase, 4, 44Pyruvate kinase, 39Pyruvate-flavoprotein oxidoreductase, 414
Quin-2, Ill, 115, 116Quinone, 315, 316
RRabbit skeletal muscle, IIIRadical autoxidation, 258Radiodiagnostic agents, 514Radionuclides in medicine, 514Raman and resonance Raman spectros-
copy, 193Reaction center cofactors, C-13Recognition proteins, 571Redox
activation, electrochemical mode of,401
active disulfide, 512behavior of Fe-S sites, 398, 400
chemistry of nucleic acids, 463, 465enzymes, 400properties of hydrogenases, 408properties of nitrogenase, 419properties of the nitrogenase iron pro-
tein, 417states of Fe2S2 proteins, 380states of Fe4S4 proteins, 386, 387
Reduced dinitrogen intermediates, 439Reduced intermediates of N2, 415Reduction of N2 to 2NH3, 415Reduction potentials for dioxygen, 255Relaxed state (R), 180Reorganization energy, 339Repair of oxidative damage, 264Replication mapping, 552Resonance Raman spectra
of Fe-S proteins, 377of Fe2S2 sites, 381of Fe3S4, 395of ferredoxins, 387of hydrogenase I, 408
Respiration, 253, 324Respiratory electron-transport chain, 267,
325, 326Restriction endonucleases, 465Reticulocytes, 18Reverse transcriptase, 524Rh(DIPh3+ structure, 485Rh(phenhphi3+ (shape-selective cleavage
of nucleic acids), 486, 487Rh(phenhphi3+ structure, 485Rh(phenh3+ , 468Rh(phihbpy3+
DNA footprinting, 483structure, 482
Rheumatoid arthritis, 518Rhodium anticancer activity, 521, 580Ribonucleotide reductase, 98, 331Ribozymes, 459Rieske centers, 382RNA
A-form, 459cleavage by lead, 466hydrolytic cleavage, 466shape-selective probes of, 4875S,487structure, 458, C-15tRNAPhe
, 458, 475, 487, 488, C-15
![Page 25: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/25.jpg)
RNA polymerase, 44, 500Root effect, 176Root hair surface, 9Rotational correlation 63Ru(bpYhdppz2+, 480, 481Ru(DlPh2+, 480, 481
+ (shape-selective cleavage ofnucleic acids), 486
Ru(phenhdppz2+, 480Ru(phenhphi2+, 471Ru(phenh2+, 468, 469
luminescence with 475metal-to-ligand charge-transfer band,
472
shape-selective cleavage of nucleicacids, 486
structure, 485Ruberythrin, 369Rubredoxin, 9, 319, 365-370
373374
ligand field, 373373
models, 377, 378Mossbauer spectrum, 374redox potential, 400reductase, 369S-7Fe charge-transfer transitions, 373structure, 372, 373
Ruthenium anticancer activity, 521, 580Ruthenium-modified cytochrome c, 356Ruthenium-modified myoglobin, 347
SS-100 135SI endonuclease,Sanocrysin, 518Sarcoplasmic Ca2+-binding proteins, 148,
C-IISarcoplasmic 121, 125, 128,
132, 162Sea 27, C-ISelf-exchange reactions, 334-337, 341Serine proteases, 152Serum proteins, 532Shape selection, 485Shape-selective recognition, 491
INDEX 609
Sickle cell anemia, 507Siderophores, 20Siderosis, 510Silica, 30Singlet dioxygen reactivity, 257Singlet oxygen reaction with nucleic
acids, 464Site-specifically platinated 573Six-electron reduction of N2, 415Skeletal muscle thin filament, 141Sodium biological concentration, 130Solubility products (calcium phosphates),
112
Spl transcription factor, 491Spatial resolution of ion concentration,
I 8Special 329Spin-state changes with dioxygen bind
ing, 238Spin-coupling in Fe2S2 ferredoxins, 381Spilugermaniurn, 521
structure, 518Staphylococcal nuclease, 500Stele, 9Stellacyanin
cross electron-transfer reaction, 342reaction with inorganic reagents, 343self-exchange reaction, 335
Stinging nettle hair, C-8Strapped 228, 243Structure-specific recognition prc)teins,
571,572Substrate activation, 282Succinate dehydrogenase, 379Sulfide oxidation, 284Superacid, 40Superhelical 475,477Superoxide, 254, 255, 265
anion radical, 191, 194disproportionation, 298reaction with nucleic acids, 464stretching frequencies, 195toxicity, 265, 266
Superioxide dismutase (also see copperzinc superoxide dismutase), 191,263, 266, 298
Superoxo coordination geometries, 196Superoxo species, 197SV40 540, 546, 548
![Page 26: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/26.jpg)
610 INDEX
TT antigen, 540T4 DNA ligase, 575Technetium radiopharmaceuticals, 514,
515Tense state (T), 180Testicular cancer, 527Tet b, 300Tetraplatin, 579Tetrathiomolybdate (MOS4
2-), 437
Therapeutic index (TI), 526Thermolysin, 39, 44
active-site structure, 85Thermophilic archaebacterial methanogen,
413Thiocubanes, 367, 385, 386,429,437Thioprismanes, 398, 399Thioredoxin, 315Three-iron centers, 391Three-state model, 386, 387Thrombin fragment, IIIThrombospondin, 154Thymidine kinase, 508Thymine, 457Thymine N3, 459Timescales, experimental, 335Tin anticancer activity, 5200'-Tocopherol, 262Transcarboxylase, 44Transcription factors, 491Transferrin, 8, 12, 17, 18,263,264
structure, 19Transverse relaxation time, 63TRENCAM, 28, 29TRENPAM, 28, 29Triethylphosphinegold(I) tetra-O-acetyl-
thioglucose, 518TRIMCAM,241,4,5-Triphosphoinositol (I,4,5-IP3), 131Triple-helix formation, 489Triplet dioxygen reactivity, 256Trophoblasts, 124, 162Tropomyosin, 141Troponin C (TnC), 135, 140, 142
Ca2 + binding, 143Ca2 + /Mg2 + sites, IIIconformational change, 143, 144Mg2 + binding, 143
regulatory sites, 143structure, 142
Troponin I 140Troponin T (TnT), 140Trypsin, III, 137, 152Trypsinogen, 111, 137, 152Tryptic digest, 162Tryptic fragments, 138Tunicates, 5, 10,27, C-ITunichrome, 10, 28, 29Tunneling pathways, 345Two-iron ferredoxins, 367Tyrosinase, 284, 508Tyrosine ligation, 296Tyrosine radical, 315
UUbiquinol, 316Ubiquinone, 316Uniporter, 131, 162Uracil N3, 459Uranyl acetate DNA footprinting, 483UV-visible spectroscopy, 193uvrABC excinuclease system, 571UW-45,421
VValerite, 156Vanadate, 27Vanadium, 10
accumulation mechanism, 28biological significance, 5nitrogenase, 433, 434transport, 27
Vesicular transport, 123Vicinal 1,2 interchange, 97Vinblastine, 527Vinyl-disulfide-chelating ligand, 441Vitamin (also see coenzyme Bd, 4,
98structure, 99
Vitamin D, 122, 146Vitamin E, 263Vitamin K, 154
WWater coordination, 41, 42WeddelJite, 156
![Page 27: I. General - authors.library.caltech.edu I., and C. Luchinat. ... Chem. Rev. 84 (1984), 137-203. Perutz, M. F., et al. Stereochemistry of cooperative mechanisms in hemoglobin. Acc](https://reader036.vdocuments.us/reader036/viewer/2022070608/5ab6d1877f8b9a156d8e322e/html5/thumbnails/27.jpg)
Whew(~lIite, 112, 156Wilson's disease, 509
XX-ray absorption near-edge structure
(XANES), 193, 372X-ray absorption spectroscopy, 372,
426X-ray photoelectron spectroscopy (XPS),
193X-ray single-crystal diffraction,
193Xanthine oxidase, 12,315,329,366,
367, 379structure, 33
Xeroderma pigmentosum (XP) human fibroblast cells, 549491
Xylem vessels, 9
INDEX 611
yYeast calmodulin, 159
ZZ-form DNA, 458, 566
structure, 567Zinc
biological significance, 3coordination, 40, 43deficiency, 507enzymes, 39, 40, 43fingers, 3,48,456,491,492, C-lprotein-mediated peptide hydrolysis, 79reactivity in cavities, 43regulatory role, 48storage, 16structural role in proteins, 48, 302,
492,493thioneins, 48toxicity, 510
A(:kIliO'l'vh~ldgllllent: HBG thanks Deborah Wuttke, Kara Bren, Gary Mines, and PaolaTurano for assistance in preparing and checking the index.