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MW 11:00-12:15 in Redwood G19
Profs: Serafim Batzoglou, Gill Bejerano
TA: Cory McLean
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Lecture 13
Insulators in the Human Genome
Regulatory Potential
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Insulators: A Reminder
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CTCF
[Ohlsson et al., 2001]
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The Glass Ceiling
[Ohlsson et al., 2001]
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ChIP-chip reminder
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Breaking the Glass Ceiling
[Kim et al., 2007]
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A known locus
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More & less interesting correlations
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Outliers
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Consensus!
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Not all are captured
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From in vitro to in silico
[Xie et al., 2007]
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Predicting Distal Elements
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ChIP-Seq
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Example: NRSF
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With original motif
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Pancreatic Islet beta cell-specification GRN
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…
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