1. EEnnccyyccllooppeeddiiaa ooff LLiiffee''ssGGlloobbaall BBiioottiicc IInntteerraaccttiioonnss UUnnlleeaasshhiinngg EEOOLL''ss IInntteerraaccttiioonnDDaattaasseettssJJoorrrriitt PPooeelleenn2233 MMaayy 22001133UUAAMM,, MMeexxiiccoo CCiittyyBBiigg FFiisshh EEaatt LLiittttllee FFiisshh,, 11555577PPiieetteerr vvaann ddeerr HHeeyyddeenn aafftteerr PPiieetteerr BBrruueeggeell tthhee EEllddeerrRReettrriieevveedd ffrroomm hhttttpp::////wwwwww..mmeettmmuusseeuumm..oorrgg//ttooaahh//wwoorrkkss--ooff--aarrtt//1177..33..8559 oonn 2200 MMaayy 22001133

2. BBiigg FFiisshh EEaatt LLiittttllee FFiisshh,, 11555577PPiieetteerr vvaann ddeerr HHeeyyddeenn aafftteerr PPiieetteerr BBrruueeggeell tthhee EEllddeerrRReettrriieevveedd ffrroomm hhttttpp::////wwwwww..mmeettmmuusseeuumm..oorrgg//ttooaahh//wwoorrkkss--ooff--aarrtt//1177..33..8559 oonn 2200 MMaayy 22001133 3. EOL GloBI Why?Challenge: Species interaction datasets exist,but are not easy to access and typically notmachine readable.Idea: To aggregate interaction datasets andmake them legible to humans and machines. 4. Retrieved from http://eol.org on 20 May 2013 5. Retrieved from http://eol.org/pages/223038/overview on 20 May 2013 6. Retrieved from http://eol.org/pages/223038/details#trophic_strategy on 20 May 2013 7. EOL GloBI Use Case 1Jane, Jim, James and Joanna make theirindividual interaction datasets available.GloBI retrieves, normalizes and indexes thefour interaction datasets.John uses GloBI to find species interactions,retrieve reference information and downloadraw data for offline analysis.John attributes Jane, Jim, James and Joanna ina published paper for the use of their data. 8. EOL GloBI Use Case 2Jane shares an interaction dataset.GloBI retrieves, normalizes and indexes theJane's interaction dataset.Jane uses GloBI to check that her dataset iscorrectly normalized and finds that a scientificname didn't match against any externaltaxonomy.Jane corrects the name Ariopsis felix to Ariopsisfelis in her original dataset.GloBI detects the changes within 24 hours andupdates automatically. 9. EOL GloBI Some Concepts 10. EOL GloBI Connecting the PiecesI nInteterraacctitoionn D DaatatasseetstsEExxteterrnnaal lT Taaxxoonnoommieiess.csv.txtPostgres .xlsWebService MySQL.tsv PLoSEEOOLL's's G GloloBBIIITISGulfBaseWoRMSAAnnaalylyssisis T Toooolsls / /A Apppplilcicaatitoionnss EExxisistitningg O OnntotolologgieiessEOLNCBIEnvo:EnvironmentsBiomesUberon:Life Stage,Body PartsOBO Taxrank:RelationsNCBI:TaxonomyGO:InteractionProcessesExcel RSASSPSSCytoscapeGephiWebApplicationsCustomProgramsIndexMatchModelConsume 11. EOL GloBI Human ReadableYou ask:Could you provide some examples of what ahardhead catfish eats?GloBI answers:A hardhead catfish (Ariopsis felis) was collectedwith a stomach containing a brown shrimp(Farfantepenaeus aztecus) at latitude 28.645and longitude -96.100 at a depth of 0.7 m on9 April 1999 (Akin et al. 2006).... 12. EOL GloBI Machine ReadableYour computer asks:http://api.globalbioticinteractions.org/taxon/Ariopsis%20felis/preysOn?includeObservations=trueGloBI answers: 13. EOL GloBI Where Are We?18 datasets containing 25K taxa, 422Kinteractions, spanning about 3K locationsAlpha version of automated ingestion,normalization, aggregation and exportmethods*Alpha version of web API* used bygomexsi.tamucc.edu projectAlpha version of data exports* used tovisualize food web in Gulf of Mexico* see github.com/jhpoelen/eol-globi-data/wiki 14. See http://globalbioticinteractions.org/browse for up-to-date info. 15. See http://globalbioticinteractions.org/references.html for up-to-date info. 16. Retrieved from http://globalbioticinteractions.wordpress.com/2013/04/10/ on 20 May 2013 17. EOL GloBI Citizen Science 18. EOL GloBI Where Are We Going?Help liberate more interaction datasetsUse GloBI to enhance EOL pagesContinue to work with scientists and softwareengineers to make machine-readable globalspecies interaction data available for scientificand educational purposes 19. EOL GloBI Who's Who?Contributors: Jorrit Poelen (lead/software), ChrisMungall (ontologies), James Simons (biologist)and Robert Reiz (software)Datasets shared by: Peter D. Roopnarine,Rachel Hertog, Carlos Garca-Robledo, JamesSimons (GoMexSI), Jenny L. Wrast, C. Barnes,International Council for the Exploration of theSea (ICES), Jose R. Ferrer Paris, Senol Akin,Malcolm Storey (BioInfo.org.uk), Ivy E. Baremore,Joel Sachs (SPIRE), Colt W. Cook, David A.Blewett, Ken-ichi Kueda (iNaturalist.org) andothers. 20. EOL GloBIFunded by EOL's Rubenstein Fellows Program.Big thanks to Jen Hammock, Jeff Holmes andCyndy Parr at EOL for supporting and providinginput for the EOL-GloBI project.Want to share a dataset? Contact Jorrit Poelenat jhpoelen+eol@gmail.com.http://globalbioticinteractions.wordpress.comhttp://github.com/jhpoelen/eol-globi-data/wiki