generalized single linkage clustering werner stuetzle rebecca nugent

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August 6, 2006 JSM Seattle 1 Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent Department of Statistics University of Washington

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Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent Department of Statistics University of Washington. Detect that there are 5 or 6 distinct groups. Assign group labels to observations. - PowerPoint PPT Presentation

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Page 1: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 1

Generalized Single Linkage Clustering

Werner StuetzleRebecca NugentDepartment of StatisticsUniversity of Washington

Page 2: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 2

Page 3: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 3

• Detect that there are 5 or 6 distinct groups.

• Assign group labels to observations.

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Page 4: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 4

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Feature histogram

Page 5: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 5

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

(a) (b) (c)

(d) (e) (f)

Page 6: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 6

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

(a) (b) (c)

(d) (e) (f)

Page 7: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 7

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 8: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 8

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 9: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 9

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 10: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 10

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 11: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 11

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 12: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 12

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 13: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 13

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 14: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 14

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 15: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 15

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 16: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 16

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 17: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 17

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 18: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 18

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 19: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 19

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 20: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 20

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 21: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 21

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 22: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 22

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).

Page 23: Generalized Single Linkage Clustering Werner Stuetzle Rebecca Nugent

August 6, 2006 JSM Seattle 23

ClusteringasastatisticalproblemAssumethatfeaturevectorsx1;:::;xniid»p(x).DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.ThereforethetotalcollectionofsetscanbearrangedintoamodetreeLeavesofmodetreecorrespondtonodesofp(x).

Considerfeaturevectorsx1;:::;xnasarandomsamplefromsome(innite)population.Letp(x)bethepopulationdensity.(Think"histogramwithinnitesimallysmallbins")DenelevelsetL(;p)byL(;p)=fxjp(x)gLetL1(;p);L2(;p);:::betheconnectedcomponentsofL(;p).If2>1thenforanyi;jeither²Li(2;p)½Lj(1;p),or²theyaredisjoint.Thereforethetotalcollectionofsetscanbearrangedintoatree,theclustertreeofthedensity.Leavesofclustertreecorrespondtomodesofp(x).