fluorescent recovery after photobleaching
DESCRIPTION
FLUORESCENT RECOVERY AFTER PHOTOBLEACHING Analysis and Applications Zareen Butt Department of Chemistry and Biochemistry University of Windsor. OVERVIEW - PowerPoint PPT PresentationTRANSCRIPT
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FLUORESCENT RECOVERY AFTER PHOTOBLEACHING
Analysis and Applications
Zareen Butt Department of Chemistry and Biochemistry University of Windsor
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OVERVIEW
Phenomenon of Photobleaching
Fluorescent Recovery After Photobleaching
Measure the mobility of nuclear
proteins, macromolecular diffusion within cell
membranes, the cytoplasm, nucleoplasm
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HOW FRAP WORKS
Molecules covalently bound to a fluorophore
Inhomogenous fluorescent population
Spatial separation between fluorescent moleclues
and photobleached molecules at time 0
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Example of photobleaching in an indian muntjac fibroblast nucleus expressing ASF/SF2 GFP
Photobleached Population
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DATA COLLECTION
0s 10s
20s 30s 90s
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FLUORESCENT RECOVERY CURVE
Intensity
Intensity
Time (seconds)
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NucleoplasmicNucleoplasmic Topoisomerase I &Topoisomerase I &
Topoisomerase IITopoisomerase IIαα & ß& ß
Chromatin Chromatin associatedassociated
Nucleosomal Nucleosomal HistonesHistones
Transcription Transcription FactorFactor
Estrogen ReceptorEstrogen Receptor
Glucocorticoid Glucocorticoid ReceptorReceptor
Nuclear Nuclear lamina/memebranelamina/memebrane
EmerinEmerin
HA-95HA-95
List of some nuclear proteins investigated by FRAP
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PREFRAP ANALYSIS
Steady-State distribution in living cells
Artifactual Distributions
Diffused distribution
Formation of large spherical aggregates
Examples of these distributions illustrated for
histone deactylase-GFP fusion proteins
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Abnormal distribution of GFP-tagged histone deacetylases in mouse 10t1/2 cells transfected with HDAC4-GFP (left) and HDAC3-GFP (right).
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DATA NORMALIZATION
The raw data must be normalized in order to compensate for:
1) the background signal in the image 2) the loss of total cellular fluorescence due to photobleaching a subregion of the cell 3) any loss of fluorescence that occurs during the course of collection of recovery time series
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DATA ANALYSIS
Diffusion coefficient (measures the rate of movement and represents the mean squared displacement of proteins over time)
Effective diffusion coefficient (does not take into consideration any interaction the proteins might undergo in the process of diffusion)
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RECENT ENZYMATIC STUDIES USING FRAP ANALYSIS
gp130/Jak 1 interaction Kinetics of association and the state of activation of GTPases in phagosomes
Mobility of Glucocorticoid Receptor in the nucleus
Phospholipase C-β2 activity and mode of memebrane interactions in living cells
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FRAP analysis of gp130-YFP at the plasma
membrane
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Cos-7 cells transfected with a gp130-YFP
containing expression vector
Region of interest with a diameter of 1.3µm is
photobleached
As a result of double bleaching, the mobile and
immobile fractions remains constant
FRAP ANALYSIS OF gp-130YFP AT THE PLASMA MEMBRANE
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The fraction of mobile and immobile fractions
remains constant after double bleaching
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FRAP recovery curves demonstarting that Rac 2(12V) reduces fluorescent recovery rate of GFP-PLCß2
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Rab-GFP FRAP.
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RECENT ENZYMATIC STUDIES USING FRAP ANALYSIS gp130/Jak 1 interaction Kinetics of association and the state of activation of GTPases in phagosomes
Mobility of Glucocorticoid Receptor in the nucleus
Phospholipase C-β2 activity and mode of memebrane interactions in living cells
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CONCLUSION
In the future, FRAP combined with useful mathematical analysis, and use of engineered proteins will serve as an important tool to study the mobility of molecules in living cells
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REFERENCES
Carrero, G., Macdonald, D., Crawford, E., Vries de., and Hendzel, M. (2003) Methods. 29, 14-28
Giese, B., Au-Yeung, C., Herrmann, A., Diefenbach, S., Haan, C., Kuster,A., Wortmann S., Roderburg, C., Heinrich P., Behrmann, I., and Muller-Newen, G. (2003) The journal of biochemistry. 278, 39205-39213
Illenberger, C., Walliser, C., Strobel, J., Gutman, O., Niv, H., Gaidzik, V., Kloog Y., Gierschik, P., and Henis, Y. (2003) The journal of biochemistry. 278, 8645-8652
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Schaaf, M., and Cidlowski, J. (2003) Molecular and Cellular Biology. 23, 1922-1934
Vieira, O., Bucci, C., Harrison, R., Trimble, W., Lanzetti, L., Greunberg J., Schreiber, A., Stahl, P., and Grinstein, S. (2003) Molecular and Cellular Biology. 23, 2501-2514