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Emerging microbiological risks Lorenzo Morelli Director, DiSTAS Department for Sustainable Food Process Faculty of Agriculture, Food and Environmental Sciences Università Cattolica del Sacro Cuore Piacenza and Cremona Italy [email protected]

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Page 1: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Emerging microbiological risks

Lorenzo Morelli

Director, DiSTAS – Department for Sustainable Food Process

Faculty of Agriculture, Food and Environmental Sciences

Università Cattolica del Sacro Cuore – Piacenza and Cremona – Italy

[email protected]

Page 2: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Let us begin with definitions

Definitions According to the definition adopted by the Scientific Committee of EFSA in 2007, “an emerging risk to human, animal and/or plant health is understood as a risk resulting from a newly identified hazard to which a significant exposure may occur or from an unexpected new or increased significant exposure and/or susceptibility to a known hazard” (EFSA, 2007).

Page 3: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Let us begin with an update

Page 4: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Let us begin with an update

Page 5: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Let us begin with an update

Page 6: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

“…. the microbes are educated to resist

penicillin and a host of penicillin-fast

organisms is bred out… In such cases the

thoughtless person playing with penicillin

is morally responsible for the death of the

man who finally succumbs to infection

with the penicillin-resistant organism. I

hope this evil can be averted.”

- Sir Alexander Fleming, June 1945

Not really unexpected

Page 7: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

What AMRs are:

Page 8: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

What AMRs are:

Page 9: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

What AMRs are:

Page 10: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,
Page 11: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Fake? or truth?

Page 12: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Turning to agri-food

Page 13: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

The EU scenario

Page 14: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

The EU scenario

Page 15: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Focus on non pathogenic, antibiotic

resistant, food-borne bacteria

Page 16: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Focus on non pathogenic, antibiotic

resistant, food-borne bacteria

Page 17: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Focus on non pathogenic, antibiotic

resistant, food-borne bacteria

Page 18: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

The research approach

Page 19: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

The research approach

Page 20: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

The research approach

Page 21: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

The results

Page 22: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

The results

Page 23: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

The results

Page 24: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

A major outcome

Page 25: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

So, everything solved?

From the final report

The genetic basis of the detected resistances as well as transmission

mechanisms were extensively investigated in WP3 by means of a full

range of molecular biology tools, from PCR and nucleotide sequence

analysis up to DNA microarray. In this final reporting period additional

data were obtained, useful to draw two different scenarios for

tetracycline and erythromycin resistances in lactic acid bacteria: a

complex scenario for the first, where some phenotypic resistances are

probably support by genes still undescribed, while the latter is

probably the result of a recent horizontal acquisition from other

sources.

Page 26: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

A new challenge: non specific AMR

Page 27: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Multi functions genes

Page 28: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

Multi functions genes

Page 30: Emerging microbiological risks - Europa · 2020. 2. 2. · Emerging microbiological risks Lorenzo Morelli Director, DiSTAS – Department for Sustainable Food Process Faculty of Agriculture,

WAR AGAINST AMR BACTERIA IS A NEVER ENDING STORY

BE HAPPY

THIS IS THE END OF THE MY PRESENTATION THANKS FOR YOUR ATTENTION