editorial machine learning applications in medical image

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Editorial Machine Learning Applications in Medical Image Analysis Ayman El-Baz, 1 Georgy Gimel’farb, 2 and Kenji Suzuki 3 1 Bioengineering Department, e University of Louisville, Louisville, KY, USA 2 Department of Computer Science, e University of Auckland, Auckland, New Zealand 3 Department of Radiology, e University of Chicago, Chicago, IL, USA Correspondence should be addressed to Ayman El-Baz; [email protected] Received 4 April 2017; Accepted 4 April 2017; Published 13 April 2017 Copyright © 2017 Ayman El-Baz et al. is is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Multiple today’s medical imaging modalities, for example, X-ray CT, MRI/fMRI, and PET scanners, supply computer- aided diagnostics (CAD) with a host of complex and highly informative images. e resulting big volumes of raw visual information are extremely difficult to handle. us new strategies for imaging-based CAD and therapies of diseases have to be developed. In recent years, machine learning became one of the major tools of medical image analysis in various CAD applications. Prior knowledge being learnt from character- istic examples provided by medical experts helps to guide image registration, fusion, segmentation, and other com- putations towards accurate descriptions of the initial data and extraction of reliable diagnostic cues to reach the CAD goals. Inspired by and combined artificial intelligence, pattern recognition, biology, mathematical statistics, optimization, and many other fields of science, machine learning is success- fully employed to find hidden relationships in the complex image data and link them to the goal diagnoses or monitoring of diseases. For a very simple example, learning quantitative 3D shape descriptors of the corpus callosum on brain MRI helps much in organizing a successful early CAD of autism or dyslexia. is special issue pursues the goals of discussing chal- lenges, technologies, and applications of machine learning in the present CAD. Careful reviewing of more than 31 submissions resulted in the selection of 12 papers covering the following topics: measuring topological DWI tractography to detect Alzheimer’s disease; 3D kidneysegmentation from abdominal images; driver fatigue detection based on a single EEG channel; accuracy assessment for iterative closest point (ICP) registration; texture and morphological analyses of multiple regions of interest (ROI) to classify breast ultra- sound (BUS) images; pulmonary nodule classification with deep convolutional neural networks; combined lung nodule classification with local difference patterns; automatic lung segmentation from thoracic CT; instrument detection and pose estimation in retinal microsurgery; deep and transfer learning for colonic polyp classification; research on tech- niques of multifeatures extraction for tongue image and its application in retrieval; and active learning to classify diabetic retinopathy. N. Amoroso et al. used multiplex network concepts to characterize the brain organization from a topological perspective. F. Khalifa et al. integrated discriminative features from current and prior visual appearance models into a random forest classifier to automatically segment 3D kidneys from dynamic CT images. J. Hu combined four entropy features and ten classifiers to detect driver fatigue by processing an EEG. G. Krell et al. compared different unconstrained ICP algorithms on realistic noisy data from an optical sensor of the tomotherapy HD system. M. I. Daoud et al. combined multiple-ROI morphological and texture analyses to effectively segment BUS images. W. Li et al. designed deep convolutional neural networks (CNNs) with strong autolearning and generalization abilities to classify lung nodules. K. Mao and Z. Deng proposed local difference patterns (LDP) and combined classifiers to specify lung nodules on low-dose CT images. Hindawi Computational and Mathematical Methods in Medicine Volume 2017, Article ID 2361061, 2 pages https://doi.org/10.1155/2017/2361061

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Page 1: Editorial Machine Learning Applications in Medical Image

EditorialMachine Learning Applications in Medical Image Analysis

Ayman El-Baz,1 Georgy Gimel’farb,2 and Kenji Suzuki3

1Bioengineering Department, The University of Louisville, Louisville, KY, USA2Department of Computer Science, The University of Auckland, Auckland, New Zealand3Department of Radiology, The University of Chicago, Chicago, IL, USA

Correspondence should be addressed to Ayman El-Baz; [email protected]

Received 4 April 2017; Accepted 4 April 2017; Published 13 April 2017

Copyright © 2017 Ayman El-Baz et al. This is an open access article distributed under the Creative Commons Attribution License,which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Multiple today’s medical imaging modalities, for example,X-ray CT, MRI/fMRI, and PET scanners, supply computer-aided diagnostics (CAD) with a host of complex and highlyinformative images. The resulting big volumes of raw visualinformation are extremely difficult to handle. Thus newstrategies for imaging-based CAD and therapies of diseaseshave to be developed.

In recent years, machine learning became one of themajor tools of medical image analysis in various CADapplications. Prior knowledge being learnt from character-istic examples provided by medical experts helps to guideimage registration, fusion, segmentation, and other com-putations towards accurate descriptions of the initial dataand extraction of reliable diagnostic cues to reach the CADgoals. Inspired by and combined artificial intelligence, patternrecognition, biology, mathematical statistics, optimization,andmany other fields of science, machine learning is success-fully employed to find hidden relationships in the compleximage data and link them to the goal diagnoses ormonitoringof diseases. For a very simple example, learning quantitative3D shape descriptors of the corpus callosum on brain MRIhelps much in organizing a successful early CAD of autismor dyslexia.

This special issue pursues the goals of discussing chal-lenges, technologies, and applications of machine learningin the present CAD. Careful reviewing of more than 31submissions resulted in the selection of 12 papers covering thefollowing topics: measuring topological DWI tractographyto detect Alzheimer’s disease; 3D kidneysegmentation fromabdominal images; driver fatigue detection based on a singleEEG channel; accuracy assessment for iterative closest point

(ICP) registration; texture and morphological analyses ofmultiple regions of interest (ROI) to classify breast ultra-sound (BUS) images; pulmonary nodule classification withdeep convolutional neural networks; combined lung noduleclassification with local difference patterns; automatic lungsegmentation from thoracic CT; instrument detection andpose estimation in retinal microsurgery; deep and transferlearning for colonic polyp classification; research on tech-niques of multifeatures extraction for tongue image and itsapplication in retrieval; and active learning to classify diabeticretinopathy.

N. Amoroso et al. used multiplex network conceptsto characterize the brain organization from a topologicalperspective.

F. Khalifa et al. integrated discriminative features fromcurrent and prior visual appearance models into a randomforest classifier to automatically segment 3D kidneys fromdynamic CT images.

J. Hu combined four entropy features and ten classifiersto detect driver fatigue by processing an EEG.

G. Krell et al. compared different unconstrained ICPalgorithms on realistic noisy data from an optical sensor ofthe tomotherapy HD system.

M. I. Daoud et al. combinedmultiple-ROImorphologicaland texture analyses to effectively segment BUS images.

W. Li et al. designed deep convolutional neural networks(CNNs) with strong autolearning and generalization abilitiesto classify lung nodules.

K. Mao and Z. Deng proposed local difference patterns(LDP) and combined classifiers to specify lung nodules onlow-dose CT images.

HindawiComputational and Mathematical Methods in MedicineVolume 2017, Article ID 2361061, 2 pageshttps://doi.org/10.1155/2017/2361061

Page 2: Editorial Machine Learning Applications in Medical Image

2 Computational and Mathematical Methods in Medicine

J. Wang and H. Guo presented a fully automatic three-stage lung segmentation by skin boundary detection, roughdetermination of a lung contour, and pulmonary parenchymarefinement.

M. Alsheakhali et al. modeled detection, tracking, andpose estimation of a retinal microsurgical instrument as aconditional random field (CRF) inference in order to localizethe instrument’s forceps tips and center point and estimatethe orientation of its shaft.

E. Ribeiro et al. explored automated classification ofcolonic polyps by deep learning of different pretrained orbuilt from scratch trainable CNNs on 8-HD-endoscopicdatabases acquired by various imaging modalities.

L. Chen et al. presented a novel approach to extract colorand texture features of tongue images. Results showed that thedeveloped approach can improve the detection rate of lesionin tongue image relative to single feature retrieval.

Y. Zhang and M. An used an active learning basedclassifier of features extracted by recognizing anatomicalparts and detecting lesions to identify retinal images andfurther reduce costs of screening the diabetic retinopathy.

Acknowledgments

We would like to thank the aforementioned contributors tothis special issue, as well as reviewers for their hard and timelywork. Finally, we give special thanks to the editorial boardof this journal for their confidence in great machine learningpotentialities in application to medical image analysis.

Ayman El-BazGeorgy Gimel’farb

Kenji Suzuki

Page 3: Editorial Machine Learning Applications in Medical Image

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