Download - SMBE Satellite Meeting on Eukaryotic -Omics
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#SMBEeuks
April 29 – May 2, 2013UC Davis Conference Center
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Logistics
• Wi-Fi• Lunch/Dinner
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Logistics
• Wi-Fi• Lunch/Dinner• Instructions for posters• Instructions for talks• Sponsor thanks• Prize for travel award recipients
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It all started in Florida…
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2011 Catalysis Meeting at NESCent
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Future Goal:
ResearchCoordinationNetwork
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Building a Eukaryotic Community
• Relaxed meeting schedule• Emphasis on speaker diversity• Breakout groups on Thursday - outputs
• Get to know your neighbor – socialize!• Tweet! (Profusely, if possible)
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Photo Credit: J. Baldwin, M. Mundo-Ocampo
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Biodiversity?
Phylogeography?
Environmental Impacts?
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Extract Environmental DNA
Amplify rRNA
High-throughput sequencing
Community analysis
Diverse marine community
EASYEASY
EASY
VERY Difficult!
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http://phylosift.wordpress.com
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Explicitly Phylogenetic ApproachesAligned environmentalsequences
Guide Tree
Evolutionary Placement of short reads
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We provide:• Support for Paired End (raw) Illumina data• Marker gene data for Bacteria, Archaea,
Eukaryotes, Viruses• Taxonomy assignments based on probability
distributions over a reference phylogeny• Complement to existing tools – QIIME, etc.
– Inputs/outputs will be compatible for use with other software tools
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Great!
Not Bad
Getting Tricky…
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MarineMetagenome
Tree PlacementSing Tree - Guppy
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AcknowledgementsUC Davis• Jonathan Eisen• Aaron Darling• Guillaume Jospin• Dongying Wu
_________________________________________________________________________________________________________
PhyloSift Software Development on Github:https://github.com/gjospin/PhyloSift
Google Group for user support: https://groups.google.com/d/forum/phylosift
Twitter: @PhyloSift